2023

• K. V. Lavrov, E. G. Grechishnikova, A. O. Shemyakina, A. H. Bernal Mungarro, M. S. Potapova, D. D. Derbikov & A. S. Yanenko
  Fluorescence Reporters turboGFP and turboRFP for Promoter Evaluation in Escherichia coli: Possibilities and Limitations.
  Appl Biochem Microbiol 59, 1168-1176 (2023).
  doi: 10.1134/S0003683823090107

2022

• Golenishchev FN, Zorenko TA, Petrova TV, Voyta LL, Kryuchkova LY, Atanasov N.
  Evaluation of the "Bottleneck" Effect in an Isolated Population of Microtus hartingi (Rodentia, Arvicolinae) from the Eastern Rhodopes (Bulgaria) by Methods of Integrative Analysis.
  Diversity. 2022 Aug; 14(9):709.
  doi: 10.3390/d14090709
• Kshirsagar P, Seshacharyulu P, Muniyan S, Rachagani S, Smith LM, Thompson C, Shah A, Mallya K, Kumar S, Jain M, Batra SK.
  DNA-gold nanoprobe-based integrated biosensing technology for non-invasive liquid biopsy of serum miRNA: A new frontier in prostate cancer diagnosis.
  Nanomedicine. 2022 Jul;43:102566. doi: 10.1016/j.nano.2022.102566.
  pmid: 35569810
• Petrova T, Skazina M, Kuksin A, Bondareva O, Abramson N
  Narrow-Headed Voles Species Complex (Cricetidae, Rodentia): Evidence for Species Differentiation Inferred from Transcriptome Data.
  Diversity. 2022 Jun; 14(7):512.
  doi: 10.3390/d14070512

2021

• Kiselev KV, Suprun AR, Aleynova OA, Ogneva ZV, Kalachev AV, Dubrovina AS.
  External dsRNA Downregulates Anthocyanin Biosynthesis-Related Genes and Affects Anthocyanin Accumulation in Arabidopsis thaliana.
  Int J Mol Sci. 2021 Jun 23;22(13):6749. doi: 10.3390/ijms22136749
  pmid: 34201713
• Isaguliants M, Krotova O, Petkov S, Jansons J, Bayurova E, Mezale D, Fridrihsone I, Kilpelainen A, Podschwadt P, Agapkina Y, Smirnova O, Kostic L, Saleem M, Latyshev O, Eliseeva O, Malkova A, Gorodnicheva T, Wahren B, Gordeychuk I, Starodubova E, Latanova A.
  Cellular Immune Response Induced by DNA Immunization of Mice with Drug Resistant Integrases of HIV-1 Clade A Offers Partial Protection against Growth and Metastatic Activity of Integrase-Expressing Adenocarcinoma Cells.
  Microorganisms. 2021 Jun 4;9(6):1219. doi: 10.3390/microorganisms9061219.
  pmid: 34199989

2020

• Aleynova OA, Kiselev KV, Ogneva ZV, Dubrovina AS.
  The Grapevine Calmodulin-Like Protein Gene CML21 Is Regulated by Alternative Splicing and Involved in Abiotic Stress Response.
  Int J Mol Sci. 2020 Oct 26;21(21):7939. doi: 10.3390/ijms21217939
  pmid: 33114685
• Juris Jansons, Ekaterina Bayurova, Dace Skrastina, Alisa Kurlanda, Ilze Fridrihsone, Dmitry Kostyushev, Anastasia Kostyusheva, Alexander Artyuhov, Erdem Dashinimaev, Darya Avdoshina, Alla Kondrashova, Vladimir Valuev-Elliston, Oleg Latyshev, Olesja Eliseeva, Stefan Petkov, Maxim Abakumov, Laura Hippe, Irina Kholodnyuk, Elizaveta Starodubova, Tatiana Gorodnicheva, Alexander Ivanov, Ilya Gordeychuk, Maria Isaguliants.
  Expression of the Reverse Transcriptase Domain of Telomerase Reverse Transcriptase Induces Lytic Cellular Response in DNA-Immunized Mice and Limits Tumorigenic and Metastatic Potential of Murine Adenocarcinoma 4T1 Cells.
  Vaccines (Basel). 2020 Jun 18;8(2):E318. doi: 10.3390/vaccines8020318
  pmid: 32570805
• Konstantin Blagodatskikh, Dmitrii Romaniuk, Dmitry Malko.
  AScall - Automatic Allele-Specific qPCR Analysis
  Front Bioeng Biotechnol. 2020 Apr 22;8:353. doi: 10.3389/fbioe.2020.00353. eCollection 2020.
  pmid: 32391349

2019

• Ishimoto T, Mori H.
  A new bioluminescence-based tool for modulating target proteins in live cells.
  Sci Rep. 2019 Dec 3;9(1):18239 doi: 10.1038/s41598-019-54712-y.
  pmid: 31796796
• Bayurova E, Jansons J, Skrastina D, Smirnova O, Mezale D, Kostyusheva A, Kostyushev D, Petkov S, Podschwadt P, Valuev-Elliston V, Sasinovich S, Korolev S, Warholm P, Latanova A, Starodubova E, Tukhvatulin A, Latyshev O, Selimov R, Metalnikov P, Komarov A, Ivanova O, Gorodnicheva T, Kochetkov S, Gottikh M, Strumfa I, Ivanov A, Gordeychuk I, Isaguliants M.
  HIV-1 Reverse Transcriptase Promotes Tumor Growth and Metastasis Formation via ROS-Dependent Upregulation of Twist.
  Oxid Med Cell Longev. 2019 Dec 2;2019:6016278 doi: 10.1155/2019/6016278. eCollection 2019.
  pmid: 31885806
• Dou L, Matz EL, Gu X, Shu F, Paxton J, Song J, Yoo J, Atala A, Jackson J, Zhang Y.
  Non-Invasive Cell Tracking with Brighter and Red-Transferred Luciferase for Potential Application in Stem Cell Therapy.
  Cell Transplant. 2019 Nov 5; 963689719885078. doi: 10.1177/0963689719885078
  pmid: 31684762
• Pavlenko OS, Gra OA, Mustafaev ON, Kabarbaeva KV, Sadovskaya NS, Tyurin AA, Fadeev VS, Goldenkova-Pavlova IV.
  Thermostable Lichenase from Clostridium thermocellum as a Host Protein in the Domain Insertion Approach.
  Biochemistry (Mosc). 2019 Aug;84(8):931-940 doi: 10.1134/S0006297919080091
  pmid: 31522675
• Maksimov EG, Yaroshevich IA, Tsoraev GV, Sluchanko NN, Slutskaya EA, Shamborant OG, Bobik TV, Friedrich T, Stepanov AV.
  A genetically encoded fluorescent temperature sensor derived from the photoactive Orange Carotenoid Protein.
  Sci Rep. 2019 Jun 20;9(1):8937 doi: 10.1038/s41598-019-45421-7
  pmid: 31222180
• Granhøj J, Dimke H, Svenningsen P.
  A bacterial display system for effective selection of protein-biotin ligase BirA variants with novel peptide specificity.
  Sci Rep. 2019 Mar 11;9(1):4118 doi: 10.1038/s41598-019-40984-x
  pmid: 30858523
• Antonov SA, Novosadova EV, Kobylyansky AG, Illarioshkin SN, Tarantul VZ, Grivennikov IA.
  Expression and Functional Properties of NMDA and GABA_A Receptors during Differentiation of Human Induced Pluripotent Stem Cells into Ventral Mesencephalic Neurons.
  Biochemistry (Mosc). 2019 Mar;84(3):310-320 doi: 10.1134/S0006297919030131
  pmid: 31221069
• Savinova OS, Moiseenko KV, Vavilova EA, Chulkin AM, Fedorova TV, Tyazhelova TV, Vasina DV.
  Evolutionary Relationships Between the Laccase Genes of Polyporales: Orthology-Based Classification of Laccase Isozymes and Functional Insight From Trametes hirsuta.
  Front Microbiol. 2019 Feb 6;10:152 doi: 10.3389/fmicb.2019.00152. eCollection 2019.
  pmid: 30792703
• Medina-Trillo C, Aroca-Aguilar JD, Ferre-Fernandez JJ, Alexandre-Moreno S, Morales L, Mendez-Hernandez CD, Garci­a-Feijoo J, Escribano J.
  Role of FOXC2 and PITX2 rare variants associated with mild functional alterations as modifier factors in congenital glaucoma.
  PLoS One. 2019 Jan 18;14(1):e0211029 doi: 10.1371/journal.pone.0211029. eCollection 2019.
  pmid: 30657791

2018

• Pigolev AV, Miroshnichenko DN, Pushin AS, Terentyev VV, Boutanayev AM, Dolgov SV, Savchenko TV.
  Overexpression of Arabidopsis OPR3 in Hexaploid Wheat (Triticum aestivum L.) Alters Plant Development and Freezing Tolerance.
  Int J Mol Sci. 2018 Dec 11;19(12) pii: E3989. doi: 10.3390/ijms19123989.
  pmid: 30544968
• Komkov AY, Minervina AA, Nugmanov GA, Saliutina MV, Khodosevich KV, Lebedev YB, Mamedov IZ.
  An advanced enrichment method for rare somatic retroelement insertions sequencing.
  Mob DNA. 2018 Oct 31;9:31 doi: 10.1186/s13100-018-0136-1. eCollection 2018.
  pmid: 30450130
• Mamontova AV, Solovyev ID, Savitsky AP, Shakhov AM, Lukyanov KA, Bogdanov AM.
  Bright GFP with subnanosecond fluorescence lifetime.
  Sci Rep. 2018 Sep 5;8(1):13224 doi: 10.1038/s41598-018-31687-w.
  pmid: 30185895
• Formella I, Svahn AJ, Radford RAW, Don EK, Cole NJ, Hogan A, Lee A, Chung RS, Morsch M.
  Real-time visualization of oxidative stress-mediated neurodegeneration of individual spinal motor neurons in vivo.
  Redox Biol. 2018 Aug 23;19:226-234 doi: 10.1016/j.redox.2018.08.011
  pmid: 30193184
• Dagdas YF, Pandey P, Tumtas Y, Sanguankiattichai N, Belhaj K, Duggan C, Leary AY, Segretin ME, Contreras MP, Savage Z, Khandare VS, Kamoun S, Bozkurt TO.
  Host autophagy machinery is diverted to the pathogen interface to mediate focal defense responses against the Irish potato famine pathogen.
  Elife. 2018 Jun 22;7 pii: e37476. doi: 10.7554/eLife.37476
  pmid: 29932422
• Antonova E, Glazova O, Gaponova A, Eremyan A, Zvereva S, Grebenkina N, Volkova N, Volchkov P.
  Successful CRISPR/Cas9 mediated homologous recombination in a chicken cell line.
  Version 2. F1000Res. 2018 Feb 28 [revised 2018 May 30];7:238 doi: 10.12688/f1000research.13457.2. eCollection 2018.
  pmid: 29946437
• Corteselli EM, Samet JM, Gibbs-Flournoy EA.
  Imaging Approaches to Assessments of Toxicological Oxidative Stress Using Genetically-encoded Fluorogenic Sensors.
  J Vis Exp. 2018 Feb 7;(132.) doi: 10.3791/56945
  pmid: 29443110

2017

• Schneider M, Prudic K, Pippel A, Klapperstuck M, Braam U, Muller CE, Schmalzing G, Markwardt F.
  Interaction of Purinergic P2X4 and P2X7 Receptor Subunits.
  Front Pharmacol. 2017 Nov 22;8:860 doi: 10.3389/fphar.2017.00860
  pmid: 29213241
• Palmisano NJ, Rosario N, Wysocki M, Hong M, Grant B, Melendez A.
  The recycling endosome protein RAB-10 promotes autophagic flux and localization of the transmembrane protein ATG-9.
  Autophagy. 2017 Oct 3;13(10):1742-1753 doi: 10.1080/15548627.2017.1356976
  pmid: 28872980
• Wasserberg D, Cabanas-Danes J, Prangsma J, O'Mahony S, Cazade PA, Tromp E, Blum C, Thompson D, Huskens J, Subramaniam V, Jonkheijm P.
  Controlling Protein Surface Orientation by Strategic Placement of Oligo-Histidine Tags.
  ACS Nano. 2017 Sep 26;11(9):9068-9083 doi: 10.1021/acsnano.7b03717
  pmid: 28850777
• Blagodatskikh KA, Kramarov VM, Barsova EV, Garkovenko AV, Shcherbo DS, Shelenkov AA, Ustinova VV, Tokarenko MR, Baker SC, Kramarova TV, Ignatov KB.
  Improved DOP-PCR (iDOP-PCR): A robust and simple WGA method for efficient amplification of low copy number genomic DNA.
  PLoS One. 2017 Sep 11;12(9):e0184507 doi: 10.1371/journal.pone.0184507. eCollection 2017.
  pmid: 28892497
• Kashkin KN, Chernov IP, Didych DA, Sverdlov ED.
  Construction of a combinatorial library of chimeric tumor-specific promoters.
  Biotechniques. 2017 Sep 1;63(3):107-116 doi: 10.2144/000114586
  pmid: 28911314
• Kost LA, Nikitin ES, Ivanova VO, Sung U, Putintseva EV, Chudakov DM, Balaban PM, Lukyanov KA, Bogdanov AM.
  Insertion of the voltage-sensitive domain into circularly permuted red fluorescent protein as a design for genetically encoded voltage sensor.
  PLoS One. 2017 Sep 1;12(9):e0184225 doi: 10.1371/journal.pone.0184225
  pmid: 28863184
• Moiseev A, Snopova L, Kuznetsov S, Buyanova N, Elagin V, Sirotkina M, Kiseleva E, Matveev L, Zaytsev V, Feldchtein F, Zagaynova E, Gelikonov V, Gladkova N, Vitkin A, Gelikonov G.
  Pixel classification method in optical coherence tomography for tumor segmentation and its complementary usage with OCT microangiography.
  J Biophotonics. 2017 Aug 29.;[Epub ahead of print] doi: 10.1002/jbio.201700072
  pmid: 28853237
• Norris DM, Yang P, Krycer JR, Fazakerley DJ, James DE, Burchfield JG.
  An improved Akt reporter reveals intra- and inter-cellular heterogeneity and oscillations in signal transduction.
  J Cell Sci. 2017 Aug 15;130(16):2757-2766 doi: 10.1242/jcs.205369
  pmid: 28663386
• Shelukhina I, Spirova E, Kudryavtsev D, Ojomoko L, Werner M, Methfessel C, Hollmann M, Tsetlin V.
  Calcium imaging with genetically encoded sensor Case12: Facile analysis of α7/α9 nAChR mutants.
  PLoS One. 2017 Aug 10;12(8):e0181936 doi: 10.1371/journal.pone.0181936
  pmid: 28797116
• Bozhanova NG, Baranov MS, Sarkisyan KS, Gritcenko R, Mineev KS, Golodukhina SV, Baleeva NS, Lukyanov KA, Mishin AS.
  Yellow and Orange Fluorescent Proteins with Tryptophan-based Chromophores.
  ACS Chem Biol. 2017 Jul 21;12(7):1867-1873 doi: 10.1021/acschembio.7b00337
  pmid: 28525263
• Obeid MA, Elburi A, Young LC, Mullen AB, Tate RJ, Ferro VA.
  Formulation of Nonionic Surfactant Vesicles (NISV) Prepared by Microfluidics for Therapeutic Delivery of siRNA into Cancer Cells.
  Mol Pharm. 2017 Jul 3;14(7):2450-2458 doi: 10.1021/acs.molpharmaceut.7b00352
  pmid: 28570823
• Hirano T, Stecker K, Munnik T, Xu H, Sato MH.
  Visualization of Phosphatidylinositol 3,5-Bisphosphate Dynamics by a Tandem ML1N-Based Fluorescent Protein Probe in Arabidopsis.
  Plant Cell Physiol. 2017 Jul 1;58(7):1185-1195 doi: 10.1093/pcp/pcx011
  pmid: 28158631
• Berthelsen MF, Callesen MM, Ostergaard TS, Liu Y, Li R, Callesen H, Dagnaes-Hansen F, Hamilton-Dutoit S, Jakobsen JE, Thomsen MK.
  Pancreas specific expression of oncogenes in a porcine model.
  Transgenic Res. 2017 Jun 29.;[Epub ahead of print] doi: 10.1007/s11248-017-0031-4
  pmid: 28664456
• Liao ZX, Kempson IM, Fa YC, Liu MC, Hsieh LC, Huang KY, Wang LF.
  Magnetically Guided Viral Transduction of Gene-Based Sensitization for Localized Photodynamic Therapy To Overcome Multidrug Resistance in Breast Cancer Cells.
  Bioconjug Chem. 2017 Jun 21;28(6):1702-1708 doi: 10.1021/acs.bioconjchem.7b00162
  pmid: 28482158
• Bogdanova YA, Schultz C, Belousov VV.
  Local Generation and Imaging of Hydrogen Peroxide in Living Cells.
  Curr Protoc Chem Biol. 2017 Jun 19;9(2):117-127 doi: 10.1002/cpch.20
  pmid: 28628200
• Vogel S, Aswendt M, Nelles M, Henn N, Schneider G, Hoehn M.
  Initial graft size and not the innate immune response limit survival of engrafted neural stem cells.
  J Tissue Eng Regen Med. 2017 Jun 9.; doi: 10.1002/term.2497
  pmid: 28599089
• Shagin DA, Turchaninova MA, Shagina IA, Shugay M, Zaretsky AR, Zueva OI, Bolotin DA, Lukyanov S, Chudakov DM.
  Application of nonsense-mediated primer exclusion (NOPE) for preparation of unique molecular barcoded libraries.
  BMC Genomics. 2017 Jun 5;18(1):440 doi: 10.1186/s12864-017-3815-2
  pmid: 28583065
• Shagin DA, Shagina IA, Zaretsky AR, Barsova EV, Kelmanson IV, Lukyanov S, Chudakov DM, Shugay M.
  A high-throughput assay for quantitative measurement of PCR errors.
  Sci Rep. 2017 Jun 2;7(1):2718 doi: 10.1038/s41598-017-02727-8
  pmid: 28578414
• Shugay M, Zaretsky AR, Shagin DA, Shagina IA, Volchenkov IA, Shelenkov AA, Lebedin MY, Bagaev DV, Lukyanov S, Chudakov DM.
  MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.
  PLoS Comput Biol. 2017 May 5;13(5):e1005480 doi: 10.1371/journal.pcbi.1005480. eCollection 2017 May.
  pmid: 28475621
• Lee MY, Ha SE, Park C, Park PJ, Fuchs R, Wei L, Jorgensen BG, Redelman D, Ward SM, Sanders KM, Ro S.
  Transcriptome of interstitial cells of Cajal reveals unique and selective gene signatures.
  PLoS One. 2017 Apr 20;12(4):e0176031 doi: 10.1371/journal.pone.0176031
  pmid: 28426719
• Jiang HN, Li Y, Cui ZJ.
  Photodynamic Physiology-Photonanomanipulations in Cellular Physiology with Protein Photosensitizers.
  Front Physiol. 2017 Apr 4;8:191 doi: 10.3389/fphys.2017.00191
  pmid: 28421000
• Ganini D, Leinisch F, Kumar A, Jiang J, Tokar EJ, Malone CC, Petrovich RM, Mason RP.
  Fluorescent proteins such as eGFP lead to catalytic oxidative stress in cells.
  Redox Biol. 2017 Mar 10;12:462-468 doi: 10.1016/j.redox.2017.03.002
  pmid: 28334681
• de Jong NW, van der Horst T, van Strijp JA, Nijland R.
  Fluorescent reporters for markerless genomic integration in Staphylococcus aureus.
  Sci Rep. 2017 Mar 7;7:43889 doi: 10.1038/srep43889
  pmid: 28266573
• Jacq A, Pernot C, Martinez Y, Domergue F, Payre B, Jamet E, Burlat V, Pacquit VB.
  The Arabidopsis Lipid Transfer Protein 2 (AtLTP2) Is Involved in Cuticle-Cell Wall Interface Integrity and in Etiolated Hypocotyl Permeability.
  Front Plant Sci. 2017 Feb 27;8:263 doi: 10.3389/fpls.2017.00263
  pmid: 28289427
• Ibáñez-Fonseca A, Alonso M, Arias FJ, Rodri­guez-Cabello JC.
  Förster Resonance Energy Transfer-Paired Hydrogel Forming Silk-Elastin-Like Recombinamers by Recombinant Conjugation of Fluorescent Proteins.
  Bioconjug Chem. 2017 Feb 15;[Epub ahead of print] doi: 10.1021/acs.bioconjchem.6b00738
  pmid: 28158945
• Tan SY, Teh C, Ang CY, Li M, Li P, Korzh V, Zhao Y.
  Responsive mesoporous silica nanoparticles for sensing of hydrogen peroxide and simultaneous treatment toward heart failure.
  Nanoscale. 2017 Feb 9;9(6):2253-2261 doi: 10.1039/c6nr08869d
  pmid: 28124705
• Tan R, Nakajima S, Wang Q, Sun H, Xue J, Wu J, Hellwig S, Zeng X, Yates NA, Smithgall TE, Lei M, Jiang Y, Levine AS, Su B, Lan L.
  Nek7 Protects Telomeres from Oxidative DNA Damage by Phosphorylation and Stabilization of TRF1.
  Mol Cell. 2017 Feb 8;pii: S1097-2765(17)30041-2 doi: 10.1016/j.molcel.2017.01.015. [Epub ahead of print]
  pmid: 28216227
• Klementieva NV, Pavlikov AI, Moiseev AA, Bozhanova NG, Mishina NM, Lukyanov SA, Zagaynova EV, Lukyanov KA, Mishin AS.
  Intrinsic blinking of red fluorescent proteins for super-resolution microscopy.
  Chem Commun (Camb). 2017 Jan 10;53(5):949-951 doi: 10.1039/c6cc09200d
  pmid: 28044165
• Liang L, Lu Y, Zhang R, Care A, Ortega TA, Deyev SM, Qian Y, Zvyagin AV.
  Deep-penetrating photodynamic therapy with KillerRed mediated by upconversion nanoparticles.
  Acta Biomater. 2017 Jan 4;pii: S1742-7061(17)30004-1 doi: 10.1016/j.actbio.2017.01.004. [Epub ahead of print]
  pmid: 28063989
• Gensberger ET, Kostic T.
  Green fluorescent protein labeling of food pathogens Yersinia enterocolitica and Yersinia pseudotuberculosis.
  J Microbiol Methods. 2017 Jan;132:21-26 doi: 10.1016/j.mimet.2016.11.008
  pmid: 27838541
• Fransen M, Brees C.
  KillerRed as a Tool to Study the Cellular Responses to Peroxisome-Derived Oxidative Stress.
  Methods Mol Biol. 2017;1595:165-179 doi: 10.1007/978-1-4939-6937-1_15
  pmid: 28409460
• Tan R, Lan L.
  Induction of Site-Specific Oxidative Damage at Telomeres by Killerred-Fused Shelretin Proteins.
  Methods Mol Biol. 2017;1587:139-146 doi: 10.1007/978-1-4939-6892-3_14
  pmid: 28324506

2016

• Zhao Z, Qi F, Liu T, Fu W.
  Effect of miR-146a and miR-155 on cardiac xenotransplantation.
  Exp Ther Med. 2016 Dec;12(6):3972-3978 doi: 10.3892/etm.2016.3867
  pmid: 28101175
• Tseng SJ, Huang KY, Kempson IM, Kao SH, Liu MC, Yang SC, Liao ZX, Yang PC.
  Remote Control of Light-Triggered Virotherapy.
  ACS Nano. 2016 Nov 22;10(11):10339-10346
  pmid: 27934080
• Schomann T, Mezzanotte L, Lourens IM, de Groot JC, Frijns JH, Huisman MA.
  Lentiviral transduction and subsequent loading with nanoparticles do not affect cell viability and proliferation in hair-follicle-bulge-derived stem cells in vitro.
  Contrast Media Mol Imaging. 2016 Nov;11(6):550-560 doi: 10.1002/cmmi.1717
  pmid: 27976505
• Petrova NV, Luzhin AV, Serebrovskaya EO, Ryumina AP, Velichko AK, Razin SV, Kantidze OL.
  Inducing cellular senescence in vitro by using genetically encoded photosensitizers.
  Aging (Albany NY). 2016 Oct 14;8(10):2449-2462 DOI: 10.18632/aging.101065
  pmid: 27744420
• Elbaz I, Zada D, Tovin A, Braun T, Lerer-Goldshtein T, Wang G, Mourrain P, Appelbaum L.
  Sleep-Dependent Structural Synaptic Plasticity of Inhibitory Synapses in the Dendrites of Hypocretin/Orexin Neurons.
  Mol Neurobiol. 2016 Oct 12;[Epub ahead of print] DOI: 10.1007/s12035-016-0175-x
  pmid: 27734337
• Xu J, Zhu W, Guo Y, Jiang C, Hussain N, Meng L, Lu S.
  Construction of Conveniently Screening pLKO.1-TRC Vector Tagged with TurboGFP.
  Appl Biochem Biotechnol. 2016 Oct 11;[Epub ahead of print] DOI: 10.1007/s12010-016-2242-1
  pmid: 27730520
• Zada D, Tovin A, Lerer-Goldshtein T, Appelbaum L.
  Pharmacological and BBB-targeted genetic therapies for thyroid hormone-dependent hypomyelination.
  Dis Model Mech. 2016 Sep 23. pii: dmm.027;
  pmid: 27664134
• Kuzmenkov AI, Nekrasova OV, Kudryashova KS, Peigneur S, Tytgat J, Stepanov AV, Kirpichnikov MP, Grishin EV, Feofanov AV, Vassilevski AA.
  Fluorescent protein-scorpion toxin chimera is a convenient molecular tool for studies of potassium channels.
  Sci Rep. 2016 Sep 21;6:33314 doi: 10.1038/srep33314
  pmid: 27650866
• Campbell AE, Bennett D.
  Targeting protein function: the expanding toolkit for conditional disruption.
  Biochem J. 2016 Sep 1;473(17):2573-89 doi: 10.1042/BCJ20160240
  pmid: 27574023
• Wu M, Wei C, Lian Z, Liu R, Zhu C, Wang H, Cao J, Shen Y, Zhao F, Zhang L, Mu Z, Wang Y, Wang X, Du L, Wang C.
  Rosa26-targeted sheep gene knock-in via CRISPR-Cas9 system.
  Sci Rep. 2016 Apr 11;6:24360 doi: 10.1038/srep24360
  pmid: 27063570
• Huang K, Caplan J, Sweigard J, Czymmek K, Donofrio N.
  Optimization of the HyPer sensor for robust real-time detection of hydrogen peroxide in the rice blast fungus.
  Mol Plant Pathol. 2016 Mar 7.; doi: 10.1111/mpp.12392
  pmid: 26950262
• Rouxel RN, Mérour E, Biacchesi S, Brémont M.
  Efficient Co-Replication of Defective Novirhabdovirus.
  Viruses. 2016 Mar 4;8(3):pii: E69 doi: 10.3390/v8030069
  pmid: 26959049
• Kong Y, Yang D, Cirillo SL, Li S, Akin A, Francis KP, Maloney T, Cirillo JD.
  Application of Fluorescent Protein Expressing Strains to Evaluation of Anti-Tuberculosis Therapeutic Efficacy In Vitro and In Vivo.
  PLoS One. 2016 Mar 2;11(3):e0149972 doi: 10.1371/journal.pone.0149972
  pmid: 26934495
• Huang BK, Langford TF, Sikes HD.
  Using sensors and generators of H₂O₂ to elucidate the toxicity mechanism of piperlongumine and phenethyl isothiocyanate.
  Antioxid Redox Signal. 2016 Feb 23;[Epub ahead of print]
  pmid: 26905788
• Zhou H, Zheng C, Su J, Chen B, Fu Y, Xie Y, Tang Q, Chou SH, He J.
  Characterization of a natural triple-tandem c-di-GMP riboswitch and application of the riboswitch-based dual-fluorescence reporter.
  Sci Rep. 2016 Feb 19;6:20871 doi: 10.1038/srep20871
  pmid: 26892868
• Edalat L, Stegen B, Klumpp L, Haehl E, Schilbach K, Lukowski R, Kühnle M, Bernhardt G, Buschauer A, Zips D, Ruth P, Huber SM.
  BK K channel blockade inhibits radiation-induced migration/brain infiltration of glioblastoma cells.
  Oncotarget. 2016 Feb 16;[Epub ahead of print] doi: 10.18632/oncotarget.7423
  pmid: 26893360
• Cameron WD, Bui CV, Hutchinson A, Loppnau P, Gräslund S, Rocheleau JV.
  Apollo-NADP : a spectrally tunable family of genetically encoded sensors for NADP.
  Nat Methods. 2016 Feb 15;[Epub ahead of print] doi: 10.1038/nmeth.3764
  pmid: 26878383
• Manoharan GB, Enkvist E, Uri A.
  Combining chemical and genetic approaches for development of responsive FRET-based sensor systems for protein kinases.
  Biophys Chem. 2016 Jan 25;211:39-48 doi: 10.1016/j.bpc.2016.01.004
  pmid: 26874332
• Takehara K, Tazawa H, Okada N, Hashimoto Y, Kikuchi S, Kuroda S, Kishimoto H, Shirakawa Y, Narii N, Mizuguchi H, Urata Y, Kagawa S, Fujiwara T.
  Targeted Photodynamic Virotherapy Armed with a Genetically Encoded Photosensitizer.
  Mol Cancer Ther. 2016 Jan;15(1):199-208 doi: 10.1158/1535-7163.MCT-15-0344
  pmid: 26625896

2015

• Pletneva NV, Pletnev VZ, Sarkisyan KS, Gorbachev DA, Egorov ES, Mishin AS, Lukyanov KA, Dauter Z, Pletnev S.
  Crystal Structure of Phototoxic Orange Fluorescent Proteins with a Tryptophan-Based Chromophore.
  PLoS One. 2015 Dec 23;10(12):e0145740 doi: 10.1371/journal.pone.0145740
  pmid: 26699366
• He T, Hatem E, Vernis L, Lei M, Huang ME.
  PRX1 knockdown potentiates vitamin K3 toxicity in cancer cells: a potential new therapeutic perspective for an old drug.
  J Exp Clin Cancer Res. 2015 Dec 21;34(1):152 doi: 10.1186/s13046-015-0270-2
  pmid: 26689287
• Lackner DH, Carré A, Guzzardo PM, Banning C, Mangena R, Henley T, Oberndorfer S, Gapp BV, Nijman SM, Brummelkamp TR, Bürckstümmer T
  A generic strategy for CRISPR-Cas9-mediated gene tagging.
  Nat Commun. 2015 Dec 17;6:10237 doi: 10.1038/ncomms10237
  pmid: 26674669
• Sarkisyan KS, Zlobovskaya OA, Gorbachev DA, Bozhanova NG, Sharonov GV, Staroverov DB, Egorov ES, Ryabova AV, Solntsev KM, Mishin AS, Lukyanov KA.
  KillerOrange, a Genetically Encoded Photosensitizer Activated by Blue and Green Light.
  PLoS One. 2015 Dec 17;10(12):e0145287 doi: 10.1371/journal.pone.0145287
  pmid: 26679300
• Shirmanova M, Yuzhakova D, Snopova L, Perelman G, Serebrovskaya E, Lukyanov K, Turchin I, Subochev P, Lukyanov S, Kamensky V, Zagaynova E.
  Towards PDT with Genetically Encoded Photosensitizer KillerRed: A Comparison of Continuous and Pulsed Laser Regimens in an Animal Tumor Model.
  PLoS One. 2015 Dec 11;10(12):e0144617 doi: 10.1371/journal.pone.0144617
  pmid: 26657001
• Warren EA, Netterfield TS, Sarkar S, Kemp ML, Payne CK.
  Spatially-resolved intracellular sensing of hydrogen peroxide in living cells.
  Sci Rep. 2015 Nov 20;5:16929 doi: 10.1038/srep16929
  pmid: 26585385
• Cho SJ, Kim SY, Jeong HC, Cheong H, Kim D, Park SJ, Choi JJ, Kim H, Chung HM, Moon SH, Cha HJ.
  Repair of Ischemic Injury by Pluripotent Stem Cell Based Cell Therapy without Teratoma through Selective Photosensitivity.
  Stem Cell Reports. 2015 Nov 11;pii: S2213-6711(15)00301-X. doi: 10.1016/j.stemcr.2015.10.004. [Epub ahead of print]
  pmid: 26584542
• Balalaeva IV, Sokolova EA, Brilkina AA, Deyev SM, Petrov RV.
  Far-red fluorescent cell line for preclinical study of HER2-targeted agents.
  Dokl Biochem Biophys. 2015 Nov;465(1):410-2 doi: 10.1134/S1607672915060174
  pmid: 26728737
• Forkink M, Basit F, Teixeira J, Swarts HG, Koopman WJ, Willems PH.
  Complex I and complex III inhibition specifically increase cytosolic hydrogen peroxide levels without inducing oxidative stress in HEK293 cells.
  Redox Biol. 2015 Oct 23;6:607-616 doi: 10.1016/j.redox.2015.09.003
  pmid: 26516986
• Meng J, Hotard AL, Currier MG, Lee S, Stobart CC, Moore ML.
  Respiratory Syncytial Virus Attachment Glycoprotein Contribution to Infection Depends on the Specific Fusion Protein.
  J Virol. 2015 Oct 14;90(1):245-53 doi: 10.1128/JVI.02140-15
  pmid: 26468535
• Zdobnova T, Sokolova E, Stremovskiy O, Karpenko D, Telford W, Turchin I, Balalaeva I, Deyev S.
  A novel far-red fluorescent xenograft model of ovarian carcinoma for preclinical evaluation of HER2-targeted immunotoxins.
  Oncotarget. 2015 Oct 13;6(31):30919-28 doi: 10.18632/oncotarget.5130
  pmid: 26436696
• Mizuta Y, Kurihara D, Higashiyama T.
  Two-photon imaging with longer wavelength excitation in intact Arabidopsis tissues.
  Protoplasma. 2015 Sep;252(5):1231-40 doi: 10.1007/s00709-014-0754-5
  pmid: 25588923
• Yanaka Y, Muramatsu T, Uetake H, Kozaki KI, Inazawa J.
  miR-544a induces epithelial-mesenchymal transition through the activation of WNT signaling pathway in gastric cancer.
  Carcinogenesis. 2015 Aug 11;pii: bgv106. [Epub ahead of print]
  pmid: 26264654
• Beilharz K, van Raaphorst R, Kjos M, Veening JW.
  Red fluorescent proteins for gene expression and protein localization studies in Streptococcus pneumoniae and efficient transformation with Gibson assembled DNA.
  Appl Environ Microbiol. 2015 Aug 7;pii: AEM.02033-15. [Epub ahead of print]
  pmid: 26253684
• Nordgren M, Francisco T, Lismont C, Hennebel L, Brees C, Wang B, Van Veldhoven PP, Azevedo JE, Fransen M.
  Export-deficient monoubiquitinated PEX5 triggers peroxisome removal in SV40 large T antigen-transformed mouse embryonic fibroblasts.
  Autophagy. 2015 Aug 3;11(8):1326-40 doi: 10.1080/15548627.2015.1061846
  pmid: 26086376
• Yuzhakova DV, Shirmanova MV, Serebrovskaya EO, Lukyanov KA, Druzhkova IN, Shakhov BE, Lukyanov SA, Zagaynova EV.
  CT26 murine colon carcinoma expressing the red fluorescent protein KillerRed as a highly immunogenic tumor model.
  J Biomed Opt. 2015 Aug 1;20(8):88002 doi: 10.1117/1.JBO.20.8.088002
  pmid: 26277828
• Sun L, Tan R, Xu J, LaFace J, Gao Y, Xiao Y, Attar M, Neumann C, Li GM, Su B, Liu Y, Nakajima S, Levine AS, Lan L.
  Targeted DNA damage at individual telomeres disrupts their integrity and triggers cell death.
  Nucleic Acids Res. 2015 Jul 27;43(13):6334-47 doi: 10.1093/nar/gkv598
  pmid: 26082495
• Yan L, Kanada M, Zhang J, Okazaki S, Terakawa S.
  Photodynamic Treatment of Tumor with Bacteria Expressing KillerRed.
  PLoS One. 2015 Jul 27;10(7):e0131518 doi: 10.1371/journal.pone.0131518
  pmid: 26213989
• Goryashchenko AS, Khrenova MG, Bochkova AA, Ivashina TV, Vinokurov LM, Savitsky AP.
  Genetically Encoded FRET-Sensor Based on Terbium Chelate and Red Fluorescent Protein for Detection of Caspase-3 Activity.
  Int J Mol Sci. 2015 Jul 22;16(7):16642-54 doi: 10.3390/ijms160716642
  pmid: 26204836
• Manoharan GB, Enkvist E, Kasari M, Viht K, Zenn M, Prinz A, Filhol O, Herberg FW, Uri A.
  FRET-based screening assay using small-molecule photoluminescent probes in lysate of cells overexpressing RFP-fused protein kinases.
  Anal Biochem. 2015 Jul 15;481:10-7 doi: 10.1016/j.ab.2015.04.009
  pmid: 25866074
• Iram SH, Gruber SJ, Raguimova ON, Thomas DD, Robia SL.
  ATP-Binding Cassette Transporter Structure Changes Detected by Intramolecular Fluorescence Energy Transfer for High-Throughput Screening.
  Mol Pharmacol. 2015 Jul;88(1):84-94 doi: 10.1124/mol.114.096792
  pmid: 25924616
• Walbrecq G, Wang B, Becker S, Hannotiau A, Fransen M, Knoops B.
  Antioxidant cytoprotection by peroxisomal peroxiredoxin-5.
  Free Radic Biol Med. 2015 Jul;84:215-26 doi: 10.1016/j.freeradbiomed.2015.02.032
  pmid: 25772011
• Kinnear E, Caproni LJ, Tregoning JS.
  A Comparison of Red Fluorescent Proteins to Model DNA Vaccine Expression by Whole Animal In Vivo Imaging.
  PLoS One. 2015 Jun 19;10(6):e0130375 doi: 10.1371/journal.pone.0130375
  pmid: 26091084
• Luker KE, Pata P, Shemiakina II, Pereverzeva A, Stacer AC, Shcherbo DS, Pletnev VZ, Skolnaja M, Lukyanov KA, Luker GD, Pata I, Chudakov DM.
  Comparative study reveals better far-red fluorescent protein for whole body imaging.
  Sci Rep. 2015 Jun 2;5:10332 doi: 10.1038/srep10332
  pmid: 26035795
• Carrel D, Hernandez K, Kwon M, Mau C, Trivedi MP, Brzustowicz LM, Firestein BL.
  Nitric oxide synthase 1 adaptor protein, a protein implicated in schizophrenia, controls radial migration of cortical neurons.
  Biol Psychiatry. 2015 Jun 1;77(11):969-78 doi: 10.1016/j.biopsych.2014.10.016
  pmid: 25542305
• Schuster M, Kilaru S, Guo M, Sommerauer M, Lin C, Steinberg G.
  Red fluorescent proteins for imaging Zymoseptoria tritici during invasion of wheat.
  Fungal Genet Biol. 2015 Jun;79:132-40 doi: 10.1016/j.fgb.2015.03.025
  pmid: 26092800
• Kammonen JI, Smolander OP, Sipilä T, Overmyer K, Auvinen P, Paulin L.
  Increased transcriptome sequencing efficiency with modified Mint-2 digestion-ligation protocol.
  Anal Biochem. 2015 May 15;477:38-40 doi: 10.1016/j.ab.2014.12.001
  pmid: 25513723
• Mishina NM, Mishin AS, Belyaev Y, Bogdanova EA, Lukyanov S, Schultz C, Belousov VV.
  Live-Cell STED Microscopy with Genetically Encoded Biosensor.
  Nano Lett. 2015 May 13;15(5):2928-32 doi: 10.1021/nl504710z
  pmid: 25871892
• Plessner M, Melak M, Chinchilla P, Baarlink C, Grosse R.
  Nuclear F-actin formation and reorganization upon cell spreading.
  J Biol Chem. 2015 May 1;290(18):11209-16 doi: 10.1074/jbc.M114.627166
  pmid: 25759381
• Detert Oude Weme RG, Kovács ÁT, de Jong SJ, Veening JW, Siebring J, Kuipers OP.
  Single cell FRET analysis for the identification of optimal FRET-pairs in Bacillus subtilis using a prototype MEM-FLIM system.
  PLoS One. 2015 Apr 17;10(4):e0123239 doi: 10.1371/journal.pone.0123239
  pmid: 25886351
• Zhu MH, Sung TS, O'Driscoll K, Koh SD, Sanders KM.
  Intracellular Ca(2+) release from endoplasmic reticulum regulates slow wave currents and pacemaker activity of interstitial cells of Cajal.
  Am J Physiol Cell Physiol. 2015 Apr 15;308(8):C608-20 doi: 10.1152/ajpcell.00360.2014
  pmid: 25631870
• Tseng SJ, Liao ZX, Kao SH, Zeng YF, Huang KY, Li HJ, Yang CL, Deng YF, Huang CF, Yang SC, Yang PC, Kempson IM.
  Highly specific in vivo gene delivery for p53-mediated apoptosis and genetic photodynamic therapies of tumour.
  Nat Commun. 2015 Mar 5;6:6456 doi: 10.1038/ncomms7456
  pmid: 25739372
• Lim JB, Sikes HD.
  Use of a genetically encoded hydrogen peroxide sensor for whole cell screening of enzyme activity.
  Protein Eng Des Sel. 2015 Mar;28(3):79-83 doi: 10.1093/protein/gzv003
  pmid: 25691762
• Pereverzev AP, Gurskaya NG, Ermakova GV, Kudryavtseva EI, Markina NM, Kotlobay AA, Lukyanov SA, Zaraisky AG, Lukyanov KA.
  Method for quantitative analysis of nonsense-mediated mRNA decay at the single cell level.
  Sci Rep. 2015 Jan 12;5:7729 doi: 10.1038/srep07729
  pmid: 25578556
• Hernández-Barrera A, Velarde-Buendía A, Zepeda I, Sanchez F, Quinto C, Sánchez-Lopez R, Cheung AY, Wu HM, Cardenas L.
  Hyper, a hydrogen peroxide sensor, indicates the sensitivity of the Arabidopsis root elongation zone to aluminum treatment.
  Sensors (Basel). 2015 Jan 6;15(1):855-67 doi: 10.3390/s150100855
  pmid: 25569758
• Khrenova M, Topol I, Collins J, Nemukhin A.
  Estimating orientation factors in the FRET theory of fluorescent proteins: the TagRFP-KFP pair and beyond.
  Biophys J. 2015 Jan 6;108(1):126-32 doi: 10.1016/j.bpj.2014.11.1859
  pmid: 25564859
• Gehrmann W, Würdemann W, Plötz T, Jörns A, Lenzen S, Elsner M.
  Antagonism Between Saturated and Unsaturated Fatty Acids in ROS Mediated Lipotoxicity in Rat Insulin-Producing Cells.
  Cell Physiol Biochem. 2015;36(3):852-65 doi: 10.1159/000430261
  pmid: 26044490
• Suzuki S, Tsukiyama T, Kaneko T, Imai H, Minami N.
  A hyperactive piggyBac transposon system is an easy-to-implement method for introducing foreign genes into mouse preimplantation embryos.
  J Reprod Dev. 2015;61(3):241-4 doi: 10.1262/jrd.2014-157
  pmid: 25740401

2014

• Zhang X, Wang D, Zhao S, Shen Z.
  A double built-in containment strategy for production of recombinant proteins in transgenic rice.
  PLoS One. 2014 Dec 22;9(12):e115459 doi: 10.1371/journal.pone.0115459
  pmid: 25531447
• Cobine CA, Sotherton AG, Peri LE, Sanders KM, Ward SM, Keef KD.
  Nitrergic neuromuscular transmission in the mouse internal anal sphincter is accomplished by multiple pathways and postjunctional effector cells.
  Am J Physiol Gastrointest Liver Physiol. 2014 Dec 1;307(11):G1057-72 doi: 10.1152/ajpgi.00331.2014
  pmid: 25301187
• Huang BK, Sikes HD.
  Quantifying intracellular hydrogen peroxide perturbations in terms of concentration.
  Redox Biol. 2014 Aug 6;2C:955-962 doi: 10.1016/j.redox.2014.08.001
  pmid: 25460730
• Mikhaylova M, Karpova A, Bär J, Bethge P, Yuanxiang P, Chen Y, Zuschratter W, Behnisch T, Kreutz MR.
  Cellular distribution of the NMDA-receptor activated synapto-nuclear messenger Jacob in the rat brain.
  Brain Struct Funct. 2014 May;219(3):843-60 doi: 10.1007/s00429-013-0539-1
  pmid: 23539133
• Ryazantsev DY, Rogozhin EA, Dimitrieva TV, Drobyazina PE, Khadeeva NV, Egorov TA, Grishin EV, Zavriev SK.
  A novel hairpin-like antimicrobial peptide from barnyard grass (Echinochloa crusgalli L.) seeds: Structure-functional and molecular-genetics characterization.
  Biochimie. 2014 Apr;99:63-70 doi: 10.1016/j.biochi.2013.11.005
  pmid: 24275143
• Cheng WY, Larson JM, Samet JM.
  Monitoring intracellular oxidative events using dynamic spectral unmixing microscopy.
  Methods. 2014 Mar 15;66(2):345-52 doi: 10.1016/j.ymeth.2013.06.008
  pmid: 23816786
• Matlashov MV, Belousov VV, Enikolopov G.
  How Much H₂O₂ Is Produced by Recombinant D-Amino Acid Oxidase in Mammalian Cells?
  Antioxid Redox Signal. 2014 Mar 1;20(7):1039-44 doi: 10.1089/ars.2013.5618
  pmid: 24020354
• Lan L, Nakajima S, Wei L, Sun L, Hsieh CL, Sobol RW, Bruchez M, Van Houten B, Yasui A, Levine AS.
  Novel method for site-specific induction of oxidative DNA damage reveals differences in recruitment of repair proteins to heterochromatin and euchromatin.
  Nucleic Acids Res. 2014 Feb;42(4):2330-45 doi: 10.1093/nar/gkt1233
  pmid: 24293652
• Lukyanov KA, Belousov VV.
  Genetically encoded fluorescent redox sensors.
  Biochim Biophys Acta. 2014 Feb;1840(2):745-56 doi: 10.1016/j.bbagen.2013.05.030
  pmid: 23726987
• Kaludercic N, Carpi A, Nagayama T, Sivakumaran V, Zhu G, Lai EW, Bedja D, De Mario A, Chen K, Gabrielson KL, Lindsey ML, Pacak K, Takimoto E, Shih JC, Kass DA, Di Lisa F, Paolocci N.
  Monoamine Oxidase B Prompts Mitochondrial and Cardiac Dysfunction in Pressure Overloaded Hearts.
  Antioxid Redox Signal. 2014 Jan 10;20(2):267-80 doi: 10.1089/ars.2012.4616
  pmid: 23581564
• Sergeeva IA, Hooijkaas IB, Van Der Made I, Jong WM, Creemers EE, Christoffels VM.
  A transgenic mouse model for the simultaneous monitoring of ANF and BNP gene activity during heart development and disease.
  Cardiovasc Res. 2014 Jan 1;101(1):78-86 doi: 10.1093/cvr/cvt228
  pmid: 24104878
• Jarvela T, Linstedt AD.
  Isoform-specific tethering links the Golgi ribbon to maintain compartmentalization.
  Mol Biol Cell. 2014 Jan;25(1):133-44 doi: 10.1091/mbc.E13-07-0395
  pmid: 24227884
• Liao ZX, Li YC, Lu HM, Sung HW.
  A genetically-encoded KillerRed protein as an intrinsically generated photosensitizer for photodynamic therapy.
  Biomaterials. 2014 Jan;35(1):500-8 doi: 10.1016/j.biomaterials.2013.09.075
  pmid: 24112805
• Hajizadeh-Sikaroodi S, Hosseini A, Fallah A, Estiri H, Noormohammadi Z, Salehi M, Ghaderian SM, Akhavan Niaki H, Soleimani M, Kazemi B.
  Lentiviral Mediating Genetic Engineered Mesenchymal Stem Cells for Releasing IL-27 as a Gene Therapy Approach for Autoimmune Diseases.
  Cell J. 2014;16(3):255-62
  pmid: 24611150

2013

• Donai K, Kuroda K, Guo Y, So KH, Sone H, Kobayashi M, Nishimori K, Fukuda T.
  Establishment of a reporter system to monitor silencing status in induced pluripotent stem cell lines.
  Anal Biochem. 2013 Dec 1;443(1):104-12 doi: 10.1016/j.ab.2013.08.014
  pmid: 23973628
• Durymanov MO, Slastnikova TA, Kuzmich AI, Khramtsov YV, Ulasov AV, Rosenkranz AA, Egorov SY, Sverdlov ED, Sobolev AS.
  Microdistribution of MC1R-targeted polyplexes in murine melanoma tumor tissue.
  Biomaterials. 2013 Dec;34(38):10209-16 doi: 10.1016/j.biomaterials.2013.08.076
  pmid: 24075405
• Kruzel ML, Actor JK, Zimecki M, Wise J, Płoszaj P, Mirza S, Kruzel M, Hwang SA, Ba X, Boldogh I.
  Novel recombinant human lactoferrin: Differential activation of oxidative stress related gene expression.
  J Biotechnol. 2013 Dec;168(4):666-75 doi: 10.1016/j.jbiotec.2013.09.011
  pmid: 24070904
• Matsui M, Chu Y, Zhang H, Gagnon KT, Shaikh S, Kuchimanchi S, Manoharan M, Corey DR, Janowski BA.
  Promoter RNA links transcriptional regulation of inflammatory pathway genes.
  Nucleic Acids Res. 2013 Dec;41(22):10086-109 doi: 10.1093/nar/gkt777
  pmid: 23999091
• Wang B, Van Veldhoven PP, Brees C, Rubio N, Nordgren M, Apanasets O, Kunze M, Baes M, Agostinis P, Fransen M.
  Mitochondria are targets for peroxisome-derived oxidative stress in cultured mammalian cells.
  Free Radic Biol Med. 2013 Dec;65:882-94 doi: 10.1016/j.freeradbiomed.2013.08.173
  pmid: 23988789
• Suntsova M, Gogvadze EV, Salozhin S, Gaifullin N, Eroshkin F, Dmitriev SE, Martynova N, Kulikov K, Malakhova G, Tukhbatova G, Bolshakov AP, Ghilarov D, Garazha A, Aliper A, Cantor CR, Solokhin Y, Roumiantsev S, Balaban P, Zhavoronkov A, Buzdin A.
  Human-specific endogenous retroviral insert serves as an enhancer for the schizophrenia-linked gene PRODH.
  Proc Natl Acad Sci U S A. 2013 Nov 26;110(48):19472-7 doi: 10.1073/pnas.1318172110
  pmid: 24218577
• Yang Y, Xiang K, Yang YX, Wang YW, Zhang X, Cui Y, Wang H, Zhu QQ, Fan L, Liu Y, Cao A.
  An individually coated near-infrared fluorescent protein as a safe and robust nanoprobe for in vivo imaging.
  Nanoscale. 2013 Nov 7;5(21):10345-52 doi: 10.1039/c3nr02508j
  pmid: 24056841
• Bertolotti M, Bestetti S, García-Manteiga JM, Medraño-Fernandez I, Dal Mas A, Malosio ML, Sitia R.
  Tyrosine kinase signal modulation: a matter of H₂O₂ membrane permeability?
  Antioxid Redox Signal. 2013 Nov 1;19(13):1447-51 doi: 10.1089/ars.2013.5330
  pmid: 23541115
• McMillan SC, Xu ZT, Zhang J, Teh C, Korzh V, Trudeau VL, Akimenko MA.
  Regeneration of breeding tubercles on zebrafish pectoral fins requires androgens and two waves of revascularization.
  Development. 2013 Nov;140(21):4323-34 doi: 10.1073/pnas.1104097108
  pmid: 24089472
• Ryumina AP, Serebrovskaya EO, Shirmanova MV, Snopova LB, Kuznetsova MM, Turchin IV, Ignatova NI, Klementieva NV, Fradkov AF, Shakhov BE, Zagaynova EV, Lukyanov KA, Lukyanov SA.
  Flavoprotein miniSOG as a genetically encoded photosensitizer for cancer cells.
  Biochim Biophys Acta. 2013 Nov;1830(11):5059-67 doi: 10.1016/j.bbagen.2013.07.015
  pmid: 23876295
• Williams DC, Bejjani RE, Ramirez PM, Coakley S, Kim SA, Lee H, Wen Q, Samuel A, Lu H, Hilliard MA, Hammarlund M.
  Rapid and permanent neuronal inactivation in vivo via subcellular generation of reactive oxygen with the use of KillerRed.
  Cell Rep. 2013 Oct 31;5(2):553-63 doi: 10.1016/j.celrep.2013.09.023
  pmid: 24209746
• Koczurkiewicz P, Podolak I, Skrzeczyńska-Moncznik J, Sarna M, Wójcik KA, Ryszawy D, Galanty A, Lasota S, Madeja Z, Czyż J, Michalik M.
  Triterpene saponosides from Lysimachia ciliata differentially attenuate invasive potential of prostate cancer cells.
  Chem Biol Interact. 2013 Oct 25;206(1):6-17 doi: 10.1016/j.cbi.2013.08.003
  pmid: 23954719
• Kopek BG, Shtengel G, Grimm JB, Clayton DA, Hess HF.
  Correlative photoactivated localization and scanning electron microscopy.
  PLoS One. 2013 Oct 25;8(10):e77209 doi: 10.1371/journal.pone.0077209
  pmid: 24204771
• Takano M, Tashiro E, Kitamura A, Maita H, Iguchi-Ariga SM, Kinjo M, Ariga H.
  Prefoldin prevents aggregation of α-synuclein.
  Brain Res. 2013 Oct 25;pii: S0006-8993(13)01425-X. doi: 10.1016/j.brainres.2013.10.034.
  pmid: 24513251
• Schwank G, Andersson-Rolf A, Koo BK, Sasaki N, Clevers H.
  Generation of BAC transgenic epithelial organoids.
  PLoS One. 2013 Oct 18;8(10):e76871 doi: 10.1371/journal.pone.0076871
  pmid: 24204693
• Rendl M, Brandstetter T, Rühe J.
  Time-resolved analysis of biological reactions based on heterogeneous assays in liquid plugs of nanoliter volume.
  Anal Chem. 2013 Oct 15;85(20):9469-77 doi: 10.1021/ac401752j
  pmid: 24083685
• Ronen M, Shalaby S, Horwitz BA.
  Role of the transcription factor ChAP1 in cytoplasmic redox homeostasis: imaging with a genetically encoded sensor in the maize pathogen Cochliobolus heterostrophus.
  Mol Plant Pathol. 2013 Oct;14(8):786-90 doi: 10.1111/mpp.12047
  pmid: 23745603
• Zhapparova ON, Fokin AI, Vorobyeva NE, Bryantseva SA, Nadezhdina ES.
  Ste20-like protein kinase SLK (LOSK) regulates microtubule organization by targeting dynactin to the centrosome.
  Mol Biol Cell. 2013 Oct;24(20):3205-14 doi: 10.1091/mbc.E13-03-0137
  pmid: 23985322
• Byrne LC, Khalid F, Lee T, Zin EA, Greenberg KP, Visel M, Schaffer DV, Flannery JG.
  AAV-mediated, optogenetic ablation of Müller Glia leads to structural and functional changes in the mouse retina.
  PLoS One. 2013 Sep 27;8(9):e76075 doi: 10.1371/journal.pone.0076075
  pmid: 24086689
• Rosenfeld GE, Mercer EJ, Mason CE, Evans T.
  Small heat shock proteins Hspb7 and Hspb12 regulate early steps of cardiac morphogenesis.
  Dev Biol. 2013 Sep 15;381(2):389-400 doi: 10.1016/j.ydbio.2013.06.025
  pmid: 23850773
• Yu LN, Zhang QL, Li X, Hua X, Cui YM, Zhang NJ, Liao WT, Ding YQ.
  Tiam1 transgenic mice display increased tumor invasive and metastatic potential of colorectal cancer after 1,2-dimethylhydrazine treatment.
  PLoS One. 2013 Sep 12;8(9):e73077 doi: 10.1371/journal.pone.0073077
  pmid: 24069171
• Rowland DC, Weible AP, Wickersham IR, Wu H, Mayford M, Witter MP, Kentros CG.
  Transgenically targeted rabies virus demonstrates a major monosynaptic projection from hippocampal area CA2 to medial entorhinal layer II neurons.
  J Neurosci. 2013 Sep 11;33(37):14889-98 doi: 10.1523/JNEUROSCI.1046-13.2013
  pmid: 24027288
• Niescier RF, Chang KT, Min KT.
  Miro, MCU, and calcium: bridging our understanding of mitochondrial movement in axons.
  Front Cell Neurosci. 2013 Sep 10;7:148 doi: 10.3389/fncel.2013.00148
  pmid: 24058334
• Wang H, Chen NG, Minev BR, Zimmermann M, Aguilar RJ, Zhang Q, Sturm JB, Fend F, Yu YA, Cappello J, Lauer UM, Szalay AA.
  Optical detection and virotherapy of live metastatic tumor cells in body fluids with vaccinia strains.
  PLoS One. 2013 Sep 3;8(9):e71105 doi: 10.1371/journal.pone.0071105
  pmid: 24019862
• Eijlander RT, Kuipers OP.
  Live-cell imaging tool optimization to study gene expression levels and dynamics in single cells of Bacillus cereus.
  Appl Environ Microbiol. 2013 Sep;79(18):5643-51 doi: 10.1128/AEM.01347-13
  pmid: 23851094
• Shaw JL, Chang KT.
  Nebula/DSCR1 Upregulation Delays Neurodegeneration and Protects against APP-Induced Axonal Transport Defects by Restoring Calcineurin and GSK-3β Signaling.
  PLoS Genet. 2013 Sep;9(9):e1003792 doi: 10.1371/journal.pgen.1003792
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• Vogt A, Scull MA, Friling T, Horwitz JA, Donovan BM, Dorner M, Gerold G, Labitt RN, Rice CM, Ploss A.
  Recapitulation of the hepatitis C virus life-cycle in engineered murine cell lines.
  Virology. 2013 Sep;444(1-2):1-11 doi: 10.1016/j.virol.2013.05.036
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• Xiang Z, Ren H, Hu YS, Coin I, Wei J, Cang H, Wang L.
  Adding an unnatural covalent bond to proteins through proximity-enhanced bioreactivity.
  Nat Methods. 2013 Sep;10(9):885-8 doi: 10.1038/nmeth.2595
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• Kobayashi J, Shidara H, Morisawa Y, Kawakami M, Tanahashi Y, Hotta K, Oka K.
  A method for selective ablation of neurons in C. elegans using the phototoxic fluorescent protein, KillerRed.
  Neurosci Lett. 2013 Aug 26;548:261-4 doi: 10.1016/j.neulet.2013.05.053
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• Enyedi B, Zana M, Donkó Á, Geiszt M.
  Spatial and temporal analysis of NADPH oxidase-generated hydrogen peroxide signals by novel fluorescent reporter proteins.
  Antioxid Redox Signal. 2013 Aug 20;19(6):523-34 doi: 10.1089/ars.2012.4594
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• Gaytán P, Roldán-Salgado A.
  Elimination of redundant and stop codons during the chemical synthesis of degenerate oligonucleotides. Combinatorial testing on the chromophore region of the red fluorescent protein mKate.
  ACS Synth Biol. 2013 Aug 16;2(8):453-62 doi: 10.1021/sb3001326
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• Guess MG, Barthel KK, Pugach EK, Leinwand LA.
  Measuring microRNA reporter activity in skeletal muscle using hydrodynamic limb vein injection of plasmid DNA combined with in vivo imaging.
  Skelet Muscle. 2013 Aug 1;3(1):19 doi: 10.1186/2044-5040-3-19
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• Grisham MB.
  Methods to detect hydrogen peroxide in living cells: Possibilities and pitfalls.
  Comp Biochem Physiol A Mol Integr Physiol. 2013 Aug;165(4):429-38 doi: 10.1016/j.cbpa.2013.02.003
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• Espinosa A, Campos C, Díaz-Vegas A, Galgani JE, Juretic N, Osorio-Fuentealba C, Bucarey JL, Tapia G, Valenzuela R, Contreras-Ferrat A, Llanos P, Jaimovich E.
  Insulin-dependent H₂O₂ production is higher in muscle fibers of mice fed with a high-fat diet.
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• Zhdanov AV, Waters AH, Golubeva AV, Dmitriev RI, Papkovsky DB.
  Availability of the key metabolic substrates dictates the respiratory response of cancer cells to the mitochondrial uncoupling.
  Biochim Biophys Acta. 2013 Jul 23;1837(1):51-62 doi: 10.1016/j.bbabio.2013.07.008
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• Matus S, Lopez E, Valenzuela V, Nassif M, Hetz C.
  Functional contribution of the transcription factor ATF4 to the pathogenesis of amyotrophic lateral sclerosis.
  PLoS One. 2013 Jul 18;8(7):e66672 doi: 10.1371/journal.pone.0066672
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• Loots GG, Bergmann A, Hum NR, Oldenburg CE, Wills AE, Hu N, Ovcharenko I, Harland RM.
  Interrogating transcriptional regulatory sequences in Tol2-mediated Xenopus transgenics.
  PLoS One. 2013 Jul 16;8(7):e68548 doi: 10.1371/journal.pone.0068548
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• Sharma A, Larue RC, Plumb MR, Malani N, Male F, Slaughter A, Kessl JJ, Shkriabai N, Coward E, Aiyer SS, Green PL, Wu L, Roth MJ, Bushman FD, Kvaratskhelia M.
  BET proteins promote efficient murine leukemia virus integration at transcription start sites.
  Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):12036-41 doi: 10.1073/pnas.1307157110
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• Brenner MH, Cai D, Swanson JA, Ogilvie JP.
  Two-photon imaging of multiple fluorescent proteins by phase-shaping and linear unmixing with a single broadband laser.
  Opt Express. 2013 Jul 15;21(14):17256-64 doi: 10.1364/OE.21.017256
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• Waldeck W, Mueller G, Glatting KH, Hotz-Wagenblatt A, Diessl N, Chotewutmonti S, Langowski J, Semmler W, Wiessler M, Braun K.
  Spatial localization of genes determined by intranuclear DNA fragmentation with the fusion proteins lamin KRED and histone KRED und visible light.
  Int J Med Sci. 2013 Jul 7;10(9):1136-48 doi: 10.7150/ijms.6121
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• Lu D, Han C, Wu T.
  15-hydroxyprostaglandin dehydrogenase-derived 15-keto-prostaglandin E2 inhibits cholangiocarcinoma cell growth through interaction with peroxisome proliferator-activated receptor-γ, SMAD2/3, and TAP63 proteins.
  J Biol Chem. 2013 Jul 5;288(27):19484-502 doi: 10.1074/jbc.M113.453886
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• Lee S, Lim WA, Thorn KS.
  Improved Blue, Green, and Red Fluorescent Protein Tagging Vectors for S. cerevisiae.
  PLoS One. 2013 Jul 2;8(7):e67902 doi: 10.1371/journal.pone.0067902
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• Knorr DA, Bock A, Brentjens RJ, Kaufman DS.
  Engineered human embryonic stem cell-derived lymphocytes to study in vivo trafficking and immunotherapy.
  Stem Cells Dev. 2013 Jul 1;22(13):1861-9 doi: 10.1089/scd.2012.0608
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• Vitriol EA, Wise AL, Berginski ME, Bamburg JR, Zheng JQ.
  Instantaneous inactivation of cofilin reveals its function of F-actin disassembly in lamellipodia.
  Mol Biol Cell. 2013 Jul;24(14):2238-47 doi: 10.1091/mbc.E13-03-0156
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• Alam R, Zylstra J, Fontaine DM, Branchini BR, Maye MM.
  Novel multistep BRET-FRET energy transfer using nanoconjugates of firefly proteins, quantum dots, and red fluorescent proteins.
  Nanoscale. 2013 Jun 21;5(12):5303-6 doi: 10.1039/c3nr01842c
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• Cai D, Cohen KB, Luo T, Lichtman JW, Sanes JR.
  Improved tools for the Brainbow toolbox.
  Nat Methods. 2013 Jun;10(6):540-7
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• Pletneva NV, Pletnev VZ, Souslova E, Chudakov DM, Lukyanov S, Martynov VI, Arhipova S, Artemyev I, Wlodawer A, Dauter Z, Pletnev S.
  Yellow fluorescent protein phiYFPv (Phialidium): structure and structure-based mutagenesis.
  Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):1005-12 doi: 10.1107/S0907444913004034
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• Vijftigschild LA, van der Ent CK, Beekman JM.
  A novel fluorescent sensor for measurement of CFTR function by flow cytometry.
  Cytometry A. 2013 Jun;83(6):576-84 doi: 10.1002/cyto.a.22275
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• Eremeeva EV, Markova SV, Vysotski ES.
  Highly active BRET-reporter based on yellow mutant of Renilla muelleri luciferase.
  Dokl Biochem Biophys. 2013 May-Jun;450(1):147-50 doi: 10.1134/S1607672913030095
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• Sun Q, Gao W, Loughran P, Shapiro R, Fan J, Billiar TR, Scott MJ.
  Caspase 1 activation is protective against hepatocyte cell death by up-regulating beclin 1 protein and mitochondrial autophagy in the setting of redox stress.
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• Rivera-Molina F, Toomre D.
  Live-cell imaging of exocyst links its spatiotemporal dynamics to various stages of vesicle fusion.
  J Cell Biol. 2013 May 27;201(5):673-80 doi: 10.1083/jcb.201212103
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• Krylova I, Kumar RR, Kofoed EM, Schaufele F.
  A versatile, bar-coded nuclear marker/reporter for live cell fluorescent and multiplexed high content imaging.
  PLoS One. 2013 May 14;8(5):e63286 doi: 10.1371/journal.pone.0063286
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• Heo JM, Nielson JR, Dephoure N, Gygi SP, Rutter J.
  Intramolecular interactions control Vms1 translocation to damaged mitochondria.
  Mol Biol Cell. 2013 May;24(9):1263-73 doi: 10.1091/mbc.E13-02-0072
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• Pogorelko G, Lionetti V, Fursova O, Sundaram RM, Qi M, Whitham SA, Bogdanove AJ, Bellincampi D, Zabotina OA.
  Arabidopsis and Brachypodium distachyon transgenic plants expressing Aspergillus nidulans acetylesterases have decreased degree of polysaccharide acetylation and increased resistance to pathogens.
  Plant Physiol. 2013 May;162(1):9-23 doi: 10.1104/pp.113.214460
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• Martinelli R, Kamei M, Sage PT, Massol R, Varghese L, Sciuto T, Toporsian M, Dvorak AM, Kirchhausen T, Springer TA, Carman CV.
  Release of cellular tension signals self-restorative ventral lamellipodia to heal barrier micro-wounds.
  J Cell Biol. 2013 Apr 29;201(3):449-65 doi: 10.1083/jcb.201209077
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• Zheng X, Zinkevich NS, Gebremedhin D, Gauthier KM, Nishijima Y, Fang J, Wilcox DA, Campbell WB, Gutterman DD, Zhang DX.
  Arachidonic acid-induced dilation in human coronary arterioles: convergence of signaling mechanisms on endothelial TRPV4-mediated Ca²⁺ entry.
  J Am Heart Assoc. 2013 Apr 25;2(3):e000080 doi: 10.1161/JAHA.113.000080
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• Hajas G, Bacsi A, Aguilera-Aguirre L, Hegde ML, Tapas KH, Sur S, Radak Z, Ba X, Boldogh I.
  8-Oxoguanine DNA glycosylase-1 links DNA repair to cellular signaling via the activation of the small GTPase Rac1.
  Free Radic Biol Med. 2013 Apr 21;61C:384-394 doi: 10.1016/j.freeradbiomed.2013.04.011
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• Kim E, Gordonov T, Liu Y, Bentley WE, Payne GF.
  Reverse engineering to suggest biologically relevant redox activities of phenolic materials.
  ACS Chem Biol. 2013 Apr 19;8(4):716-24 doi: 10.1021/cb300605s
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• Erhart D, Zimmermann M, Jacques O, Wittwer MB, Ernst B, Constable E, Zvelebil M, Beaufils F, Wymann MP.
  Chemical development of intracellular protein heterodimerizers.
  Chem Biol. 2013 Apr 18;20(4):549-57 doi: 10.1016/j.chembiol.2013.03.010
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• Salnikova LE, Smelaya TV, Moroz VV, Golubev AM, Rubanovich AV.
  Host genetic risk factors for community-acquired pneumonia.
  Gene. 2013 Apr 15;518(2):449-56 doi: 10.1016/j.gene.2012.10.027
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• Mylle E, Codreanu MC, Boruc J, Russinova E.
  Emission spectra profiling of fluorescent proteins in living plant cells.
  Plant Methods. 2013 Apr 3;9(1):10 doi: 10.1186/1746-4811-9-10
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• Birk J, Meyer M, Aller I, Hansen HG, Odermatt A, Dick TP, Meyer AJ, Appenzeller-Herzog C.
  Endoplasmic reticulum: reduced and oxidized glutathione revisited.
  J Cell Sci. 2013 Apr 1;126(Pt 7):1604-17 doi: 10.1242/jcs.117218
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• Li N, You X, Chen T, Mackowiak SD, Friedländer MR, Weigt M, Du H, Gogol-Döring A, Chang Z, Dieterich C, Hu Y, Chen W.
  Global profiling of miRNAs and the hairpin precursors: insights into miRNA processing and novel miRNA discovery.
  Nucleic Acids Res. 2013 Apr 1;41(6):3619-34 doi: 10.1093/nar/gkt072
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• Andrio E, Marino D, Marmeys A, de Segonzac MD, Damiani I, Genre A, Huguet S, Frendo P, Puppo A, Pauly N.
  Hydrogen peroxide-regulated genes in the Medicago truncatula-Sinorhizobium meliloti symbiosis.
  New Phytol. 2013 Apr;198(1):179-89 doi: 10.1111/nph.12120
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• Bose JL, Fey PD, Bayles KW.
  Genetic tools to enhance the study of gene function and regulation in Staphylococcus aureus.
  Appl Environ Microbiol. 2013 Apr;79(7):2218-24 doi: 10.1128/AEM.00136-13
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• Klimenko OV, Shtilman MI.
  Transfection of Kasumi-1 cells with a new type of polymer carriers loaded with miR-155 and antago-miR-155.
  Cancer Gene Ther. 2013 Apr;20(4):237-41 doi: 10.1038/cgt.2013.11
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• Panieri E, Gogvadze V, Norberg E, Venkatesh R, Orrenius S, Zhivotovsky B.
  Reactive oxygen species generated in different compartments induce cell death, survival, or senescence.
  Free Radic Biol Med. 2013 Apr;57:176-87 doi: 10.1016/j.freeradbiomed.2012.12.024
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• Baskaev KK, Kholodenko RV, Malakhova GV, Gaĭfullin NM, Korzeneva EA, Suntsova MV, Buzdin AA.
  Experimental analysis of human specific protein coding open reading frame c11orf72.
  Bioorg Khim. 2013 Mar-Apr;39(2):151-8
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• Bilan DS, Pase L, Joosen L, Gorokhovatsky AY, Ermakova YG, Gadella TW, Grabher C, Schultz C, Lukyanov S, Belousov VV.
  HyPer-3: a genetically encoded H(2)O(2) probe with improved performance for ratiometric and fluorescence lifetime imaging.
  ACS Chem Biol. 2013 Mar 15;8(3):535-42 doi: 10.1021/cb300625g
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• Rask L, Fregil M, Høgdall E, Mitchelmore C, Eriksen J.
  Development of a metastatic fluorescent Lewis Lung carcinoma mouse model: Identification of mRNAs and microRNAs involved in tumor invasion.
  Gene. 2013 Mar 15;517(1):72-81 doi: 10.1016/j.gene.2012.12.083
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• Richard M, Boulin T, Robert VJ, Richmond JE, Bessereau JL.
  Biosynthesis of ionotropic acetylcholine receptors requires the evolutionarily conserved ER membrane complex.
  Proc Natl Acad Sci U S A. 2013 Mar 12;110(11):E1055-63 doi: 10.1073/pnas.1216154110
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• Kitaguchi T, Oya M, Wada Y, Tsuboi T, Miyawaki A.
  Extracellular calcium influx activates adenylate cyclase 1 and potentiates insulin secretion in MIN6 cells.
  Biochem J. 2013 Mar 1;450(2):365-73 doi: 10.1042/BJ20121022
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• Gaur NA, Hasek J, Brickner DG, Qiu H, Zhang F, Wong CM, Malcova I, Vasicova P, Brickner JH, Hinnebusch AG.
  Vps factors are required for efficient transcription elongation in budding yeast.
  Genetics. 2013 Mar;193(3):829-51 doi: 10.1534/genetics.112.146308
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• Gibbs-Flournoy EA, Simmons SO, Bromberg PA, Dick TP, Samet JM.
  Monitoring intracellular redox changes in ozone-exposed airway epithelial cells.
  Environ Health Perspect. 2013 Mar;121(3):312-7 doi: 10.1289/ehp.1206039
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• Losón OC, Song Z, Chen H, Chan DC.
  Fis1, Mff, MiD49, and MiD51 mediate Drp1 recruitment in mitochondrial fission.
  Mol Biol Cell. 2013 Mar;24(5):659-67 doi: 10.1091/mbc.E12-10-0721
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• Shirmanova MV, Serebrovskaya EO, Lukyanov KA, Snopova LB, Sirotkina MA, Prodanetz NN, Bugrova ML, Minakova EA, Turchin IV, Kamensky VA, Lukyanov SA, Zagaynova EV.
  Phototoxic effects of fluorescent protein KillerRed on tumor cells in mice.
  J Biophotonics. 2013 Mar;6(3):283-90 doi: 10.1002/jbio.201200056
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• Wasserberg D, Nicosia C, Tromp EE, Subramaniam V, Huskens J, Jonkheijm P.
  Oriented protein immobilization using covalent and noncovalent chemistry on a thiol-reactive self-reporting surface.
  J Am Chem Soc. 2013 Feb 27;135(8):3104-11 doi: 10.1021/ja3102133
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• Abe H, Wakabayashi R, Yonemura H, Yamada S, Goto M, Kamiya N.
  Split spy0128 as a potent scaffold for protein cross-linking and immobilization.
  Bioconjug Chem. 2013 Feb 20;24(2):242-50 doi: 10.1021/bc300606b
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• Didych DA, Shamsutdinov MF, Smirnov NA, Akopov SB, Monastyrskaya GS, Uspenskaya NY, Nikolaev LG, Sverdlov ED.
  Human PSENEN and U2AF1L4 genes are concertedly regulated by a genuine bidirectional promoter.
  Gene. 2013 Feb 15;515(1):34-41 doi: 10.1016/j.gene.2012.11.058
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• Arampatzi P, Gialitakis M, Makatounakis T, Papamatheakis J.
  Gene-specific factors determine mitotic expression and bookmarking via alternate regulatory elements.
  Nucleic Acids Res. 2013 Feb 1;41(4):2202-15 doi: 10.1093/nar/gks1365
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• Gandhirajan RK, Meng S, Chandramoorthy HC, Mallilankaraman K, Mancarella S, Gao H, Razmpour R, Yang XF, Houser SR, Chen J, Koch WJ, Wang H, Soboloff J, Gill DL, Madesh M.
  Blockade of NOX2 and STIM1 signaling limits lipopolysaccharide-induced vascular inflammation.
  J Clin Invest. 2013 Feb 1;123(2):887-902 doi: 10.1172/JCI65647
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• Bertz A, Ehlers JE, Wöhl-Bruhn S, Bunjes H, Gericke KH, Menzel H.
  Mobility of green fluorescent protein in hydrogel-based drug-delivery systems studied by anisotropy and fluorescence recovery after photobleaching.
  Macromol Biosci. 2013 Feb;13(2):215-26 doi: 10.1002/mabi.201200325
  pmid: 23255283
• Brynildsen MP, Winkler JA, Spina CS, MacDonald IC, Collins JJ.
  Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production.
  Nat Biotechnol. 2013 Feb;31(2):160-5 doi: 10.1038/nbt.2458
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• Dragoi AM, Talman AM, Agaisse H.
  Bruton's tyrosine kinase regulates Shigella flexneri dissemination in HT-29 intestinal cells.
  Infect Immun. 2013 Feb;81(2):598-607 doi: 10.1128/IAI.00853-12
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• Love NR, Chen Y, Ishibashi S, Kritsiligkou P, Lea R, Koh Y, Gallop JL, Dorey K, Amaya E.
  Amputation-induced reactive oxygen species are required for successful Xenopus tadpole tail regeneration.
  Nat Cell Biol. 2013 Feb;15(2):222-8 doi: 10.1038/ncb2659
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• Yoshihama Y, Izumisawa Y, Akimoto K, Satoh Y, Mizushima T, Satoh K, Chida K, Takagawa R, Akiyama H, Ichikawa Y, Kunisaki C, Inayama Y, Endo I, Nagashima Y, Ohno S.
  High expression of KIBRA in low atypical protein kinase C-expressing gastric cancer correlates with lymphatic invasion and poor prognosis.
  Cancer Sci. 2013 Feb;104(2):259-65 doi: 10.1111/cas.12066
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• Kasymov V, Larina O, Castaldo C, Marina N, Patrushev M, Kasparov S, Gourine AV.
  Differential sensitivity of brainstem versus cortical astrocytes to changes in pH reveals functional regional specialization of astroglia.
  J Neurosci. 2013 Jan 9;33(2):435-41 doi: 10.1523/JNEUROSCI.2813-12.2013
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• Aseev LV, Chugunov AO, Efremov RG, Boni IV.
  A single missense mutation in a coiled-coil domain of Escherichia coli ribosomal protein S2 confers a thermosensitive phenotype that can be suppressed by ribosomal protein S1.
  J Bacteriol. 2013 Jan;195(1):95-104 doi: 10.1128/JB.01305-12
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• Barata AG, Dick TP.
  In vivo imaging of H₂O₂ production in Drosophila.
  Methods Enzymol. 2013;526:61-82 doi: 10.1016/B978-0-12-405883-5.00004-1
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• Bonekamp NA, Islinger M, Lázaro MG, Schrader M.
  Cytochemical detection of peroxisomes and mitochondria.
  Methods Mol Biol. 2013;931:467-82 doi: 10.1007/978-1-62703-056-4_24
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• Enyedi B, Niethammer P.
  H₂O₂: a chemoattractant?
  Methods Enzymol. 2013;528:237-55 doi: 10.1016/B978-0-12-405881-1.00014-8
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• Exposito-Rodriguez M, Laissue PP, Littlejohn GR, Smirnoff N, Mullineaux PM.
  The use of HyPer to examine spatial and temporal changes in H₂O₂ in high light-exposed plants.
  Methods Enzymol. 2013;527:185-201 doi: 10.1016/B978-0-12-405882-8.00010-6
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• Hernández-Barrera A, Quinto C, Johnson EA, Wu HM, Cheung AY, Cárdenas L.
  Using hyper as a molecular probe to visualize hydrogen peroxide in living plant cells: a method with virtually unlimited potential in plant biology.
  Methods Enzymol. 2013;527:275-90 doi: 10.1016/B978-0-12-405882-8.00015-5
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• Karlsson T, Bolshakova A, Magalhães MA, Loitto VM, Magnusson KE.
  Fluxes of water through aquaporin 9 weaken membrane-cytoskeleton anchorage and promote formation of membrane protrusions.
  PLoS One. 2013;8(4):e59901 doi: 10.1371/journal.pone.0059901
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• Kniss A, Lu H, Jones DP, Kemp ML.
  A microfluidic systems biology approach for live single-cell mitochondrial ROS imaging.
  Methods Enzymol. 2013;526:219-30 doi: 10.1016/B978-0-12-405883-5.00013-2
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• Lin CP, Kim C, Smith SO, Neiman AM.
  A highly redundant gene network controls assembly of the outer spore wall in S. cerevisiae.
  PLoS Genet. 2013;9(8):e1003700 doi: 10.1371/journal.pgen.1003700
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• Mishina NM, Markvicheva KN, Bilan DS, Matlashov ME, Shirmanova MV, Liebl D, Schultz C, Lukyanov S, Belousov VV.
  Visualization of intracellular hydrogen peroxide with HyPer, a genetically encoded fluorescent probe.
  Methods Enzymol. 2013;526:45-59 doi: 10.1016/B978-0-12-405883-5.00003-X
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• Mishina NM, Markvicheva KN, Fradkov AF, Zagaynova EV, Schultz C, Lukyanov S, Belousov VV.
  Imaging H₂O₂ microdomains in receptor tyrosine kinases signaling.
  Methods Enzymol. 2013;526:175-87 doi: 10.1016/B978-0-12-405883-5.00011-9
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• Ñàäðàääèíîâà ÝÐ, Øåñòàêîâ ÀÈ, Àáðàìîâ ÑÌ, Êîøêàðîâà ËÀ, Ìèòðîôàíîâà ÒÈ, Âàñèëîâ ÐÃ, Íåòðóñîâ ÀÈ.
  Ñêðèíèíã ìèêðîáíûõ ñîîáùåñòâ – ïðîäóöåíòîâ áèîâîäîðîäà.
  Âåñòíèê áèîòåõíîëîãèè è ôèçèêî-õèìè÷åñêîé áèîëîãèè. 2013;9(2):43-51 http://www.biorosinfo.ru/archive/journal/
• Sartoretto JL, Kalwa H, Romero N, Michel T.
  In vivo imaging of nitric oxide and hydrogen peroxide in cardiac myocytes.
  Methods Enzymol. 2013;528:61-78 doi: 10.1016/B978-0-12-405881-1.00004-5
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• Tanaka Y, Shibahara K, Nakagawa T.
  Development of gateway binary vectors R4L1pGWB possessing the bialaphos resistance gene (bar) and the tunicamycin resistance gene as markers for promoter analysis in plants.
  Biosci Biotechnol Biochem. 2013;77(8):1795-7
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• Wickersham IR, Sullivan HA, Seung HS.
  Axonal and subcellular labelling using modified rabies viral vectors.
  Nat Commun. 2013;4:2332 doi: 10.1038/ncomms3332
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• Yang JY, Yang WY.
  Bit-by-bit autophagic removal of parkin-labelled mitochondria.
  Nat Commun. 2013;4:2428 doi: 10.1038/ncomms3428
  pmid: 24013556

2012

• Viswanatha R, Ohouo PY, Smolka MB, Bretscher A.
  Local phosphocycling mediated by LOK/SLK restricts ezrin function to the apical aspect of epithelial cells.
  J Cell Biol. 2012 Dec 10;199(6):969-84 doi: 10.1083/jcb.201207047
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• Hotard AL, Shaikh FY, Lee S, Yan D, Teng MN, Plemper RK, Crowe JE Jr, Moore ML.
  A stabilized respiratory syncytial virus reverse genetics system amenable to recombination-mediated mutagenesis.
  Virology. 2012 Dec 5;434(1):129-36 doi: 10.1016/j.virol.2012.09.022
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• Sakurai C, Hashimoto H, Nakanishi H, Arai S, Wada Y, Sun-Wada GH, Wada I, Hatsuzawa K.
  SNAP-23 regulates phagosome formation and maturation in macrophages.
  Mol Biol Cell. 2012 Dec;23(24):4849-63 doi: 10.1091/mbc.E12-01-0069
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• Shemiakina II, Ermakova GV, Cranfill PJ, Baird MA, Evans RA, Souslova EA, Staroverov DB, Gorokhovatsky AY, Putintseva EV, Gorodnicheva TV, Chepurnykh TV, Strukova L, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM, Shcherbo D.
  A monomeric red fluorescent protein with low cytotoxicity.
  Nat Commun. 2012 Nov 13;3:1204 doi: 10.1038/ncomms2208
  pmid: 23149748
• Chai Y, Li W, Feng G, Yang Y, Wang X, Ou G.
  Live imaging of cellular dynamics during Caenorhabditis elegans postembryonic development.
  Nat Protoc. 2012 Nov 8;7(12):2090-102 doi: 10.1038/nprot.2012.128
  pmid: 23138350
• Nefedova LN, Urusov FA, Romanova NI, Shmel'kova AO, Kim AI.
  Study of the transcriptional and transpositional activities of the Tirant retrotransposon in Drosophila melanogaster strains mutant for the flamenco locus.
  Genetika. 2012 Nov;48(11):1271-9 (in Russian)
  pmid: 23297482
• de Rosny E, Carpentier P.
  GFP-Like Phototransformation Mechanisms in the Cytotoxic Fluorescent Protein KillerRed Unraveled by Structural and Spectroscopic Investigations.
  J Am Chem Soc. 2012 Oct 31;134(43):18015-21 doi: 10.1021/ja3073337
  pmid: 23025285
• Wang Y, Nartiss Y, Steipe B, McQuibban GA, Kim PK.
  ROS-induced mitochondrial depolarization initiates PARK2/PARKIN-dependent mitochondrial degradation by autophagy.
  Autophagy. 2012 Oct 1;8(10):1462-76 doi: 10.4161/auto.21211
  pmid: 22889933
• Pardo A, Stöcker M, Kampmeier F, Melmer G, Fischer R, Thepen T, Barth S.
  In vivo imaging of immunotoxin treatment using Katushka-transfected A-431 cells in a murine xenograft tumour model.
  Cancer Immunol Immunother. 2012 Oct;61(10):1617-26
  pmid: 22350071
• Salomonnson E, Mihalko LA, Verkhusha VV, Luker KE, Luker GD.
  Cell-based and in vivo spectral analysis of fluorescent proteins for multiphoton microscopy.
  J Biomed Opt. 2012 Sep 1;17(9):96001 doi: 10.1117/1.JBO.17.9.096001
  pmid: 22975677
• Pletnev S, Pletneva NV, Souslova EA, Chudakov DM, Lukyanov S, Wlodawer A, Dauter Z, Pletnev V.
  Structural basis for bathochromic shift of fluorescence in far-red fluorescent proteins eqFP650 and eqFP670.
  Acta Crystallogr D Biol Crystallogr. 2012 Sep;68(Pt 9):1088-97 doi: 10.1107/S0907444912020598
  pmid: 22948909
• Viacheslavova AO, Mustafaev ON, Tiurin AA, Shimshilashvili KhR, Berdichevets IN, Shaiakhmetova DM, Goldenkov MA, Fadeev VS, Shelud'ko IuV, Goldenkova-Pavlova IV.
  Set of module vectors for stable or transient expression of heterologous genes in plants.
  Genetika. 2012 Sep;48(9):1046-56 (in Russian)
  pmid: 23113332
• Shibuya T, Tsujimoto Y.
  Deleterious effects of mitochondrial ROS generated by KillerRed photodynamic action in human cell lines and C. elegans.
  J Photochem Photobiol B. 2012 Aug 22;117C:1-12 doi: 10.1016/j.jphotobiol.2012.08.005
  pmid: 23000754
• Mishina NM, Bogeski I, Bolotin DA, Hoth M, Niemeyer BA, Schultz C, Zagaynova EV, Lukyanov S, Belousov VV.
  Can we see PIP(3) and hydrogen peroxide with a single probe?
  Antioxid Redox Signal. 2012 Aug 1;17(3):505-12 doi: 10.1089/ars.2012.4574
  pmid: 22369174
• Zelmer A, Carroll P, Andreu N, Hagens K, Mahlo J, Redinger N, Robertson BD, Wiles S, Ward TH, Parish T, Ripoll J, Bancroft GJ, Schaible UE.
  A new in vivo model to test anti-tuberculosis drugs using fluorescence imaging.
  J Antimicrob Chemother. 2012 Aug;67(8):1948-60 doi: 10.1093/jac/dks161
  pmid: 22635525
• Cao C, Chen Y, Masood R, Sinha UK, Kobielak A.
  α-Catulin Marks the Invasion Front of Squamous Cell Carcinoma and Is Important for Tumor Cell Metastasis.
  Mol Cancer Res. 2012 Jul;10(7):892-903 doi: 10.1158/1541-7786.MCR-12-0169
  pmid: 22648798
• Ruzina MN, Andrianov BV, Shaĭkhaev GO, Sulimova GE.
  Identification and classification of bovine leukemia virus isolates in Russia and Ukraine based on the pol viral gene polymorphism.
  Genetika. 2012 Jul;48(7):855-62 (in Russian)
  pmid: 22988771
• Telford WG, Hawley T, Subach F, Verkhusha V, Hawley RG.
  Flow cytometry of fluorescent proteins.
  Methods. 2012 Jul;57(3):318-30 doi: 10.1016/j.ymeth.2012.01.003
  pmid: 22293036
• Khan MJ, Rizwan Alam M, Waldeck-Weiermair M, Karsten F, Groschner L, Riederer M, Hallström S, Rockenfeller P, Konya V, Heinemann A, Madeo F, Graier WF, Malli R.
  Inhibition of autophagy rescues palmitic acid-induced necroptosis of endothelial cells.
  J Biol Chem. 2012 Jun 15;287(25):21110-20 doi: 10.1074/jbc.M111.319129
  pmid: 22556413
• Jacoby K, Metzger M, Shen BW, Certo MT, Jarjour J, Stoddard BL, Scharenberg AM.
  Expanding LAGLIDADG endonuclease scaffold diversity by rapidly surveying evolutionary sequence space.
  Nucleic Acids Res. 2012 Jun;40(11):4954-64 doi: 10.1093/nar/gkr1303
  pmid: 22334611
• Zanet J, Jayo A, Plaza S, Millard T, Parsons M, Stramer B.
  Fascin promotes filopodia formation independent of its role in actin bundling.
  J Cell Biol. 2012 May 14;197(4):477-86 doi: 10.1083/jcb.201110135
  pmid: 22564415
• Godfrey R, Arora D, Bauer R, Stopp S, Müller JP, Heinrich T, Böhmer SA, Dagnell M, Schnetzke U, Scholl S, Östman A, Böhmer FD.
  Cell transformation by FLT3 ITD in acute myeloid leukemia involves oxidative inactivation of the tumor suppressor protein-tyrosine phosphatase DEP-1/ PTPRJ.
  Blood. 2012 May 10;119(19):4499-511 doi: 10.1182/blood-2011-02-336446
  pmid: 22438257
• Deng X, Li Z, Zhang W.
  Transcriptome sequencing of Salmonella enterica serovar Enteritidis under desiccation and starvation stress in peanut oil.
  Food Microbiol. 2012 May;30(1):311-5 doi: 10.1016/j.fm.2011.11.001
  pmid: 22265317
• Iida R, Ueki M, Yasuda T.
  Identification of Rhit as a novel transcriptional repressor of human Mpv17-like protein with a mitigating effect on mitochondrial dysfunction, and its transcriptional regulation by FOXD3 and GABP.
  Free Radic Biol Med. 2012 Apr 15;52(8):1413-22 doi: 10.1016/j.freeradbiomed.2012.01.003
  pmid: 22306510
• Gurskaya NG, Staroverov DB, Zhang L, Fradkov AF, Markina NM, Pereverzev AP, Lukyanov KA.
  Analysis of alternative splicing of cassette exons at single-cell level using two fluorescent proteins.
  Nucleic Acids Res. 2012 Apr 1;40(8):e57 doi: 10.1093/nar/gkr1314
  pmid: 22259036
• Choi WG, Swanson SJ, Gilroy S.
  High-resolution imaging of Ca²⁺ , redox status, ROS and pH using GFP biosensors.
  Plant J. 2012 Apr;70(1):118-28 doi: 10.1111/j.1365-313X.2012.04917.x
  pmid: 22449047
• Yin BC, Liu YQ, Ye BC.
  One-step, multiplexed fluorescence detection of microRNAs based on duplex-specific nuclease signal amplification.
  J Am Chem Soc. 2012 Mar 21;134(11):5064-7 doi: 10.1021/ja300721s
  pmid: 22394262
• Ryan SD, Bhanot K, Ferrier A, De Repentigny Y, Chu A, Blais A, Kothary R.
  Microtubule stability, Golgi organization, and transport flux require dystonin-a2-MAP1B interaction.
  J Cell Biol. 2012 Mar 19;196(6):727-42 doi: 10.1083/jcb.201107096
  pmid: 22412020
• Anderson DD, Woeller CF, Chiang EP, Shane B, Stover PJ.
  Serine hydroxymethyltransferase anchors de novo thymidylate synthesis pathway to nuclear lamina for DNA synthesis.
  J Biol Chem. 2012 Mar 2;287(10):7051-62 doi: 10.1074/jbc.M111.333120
  pmid: 22235121
• Back P, De Vos WH, Depuydt GG, Matthijssens F, Vanfleteren JR, Braeckman BP.
  Exploring real-time in vivo redox biology of developing and aging Caenorhabditis elegans.
  Free Radic Biol Med. 2012 Mar 1;52(5):850-9 doi: 10.1016/j.freeradbiomed.2011.11.037
  pmid: 22226831
• Numata T, Sato K, Christmann J, Marx R, Mori Y, Okada Y, Wehner F.
  The ΔC splice-variant of TRPM2 is the hypertonicity-induced cation channel in HeLa cells, and the ecto-enzyme CD38 mediates its activation.
  J Physiol. 2012 Mar 1;590(Pt 5):1121-38 doi: 10.1113/jphysiol.2011.220947
  pmid: 22219339
• Ray P, Lewin SA, Mihalko LA, Lesher-Perez SC, Takayama S, Luker KE, Luker GD.
  Secreted CXCL12 (SDF-1) forms dimers under physiological conditions.
  Biochem J. 2012 Mar 1;442(2):433-42 doi: 10.1042/BJ20111341
  pmid: 22142194
• Dower K, Filone CM, Hodges EN, Bjornson ZB, Rubins KH, Brown LE, Schaus S, Hensley LE, Connor JH.
  Identification of a pyridopyrimidinone inhibitor of orthopoxviruses from a diversity-oriented synthesis library.
  J Virol. 2012 Mar;86(5):2632-40 doi: 10.1128/JVI.05416-11
  pmid: 22205744
• Goh T, Joi S, Mimura T, Fukaki H.
  The establishment of asymmetry in Arabidopsis lateral root founder cells is regulated by LBD16/ASL18 and related LBD/ASL proteins.
  Development. 2012 Mar;139(5):883-93 doi: 10.1242/dev.071928
  pmid: 22278921
• Gusdon AM, Zhu J, Van Houten B, Chu CT.
  ATP13A2 regulates mitochondrial bioenergetics through macroautophagy.
  Neurobiol Dis. 2012 Mar;45(3):962-72 doi: 10.1016/j.nbd.2011.12.015
  pmid: 22198378
• Sauvage C, Vagner M, Derôme N, Audet C, Bernatchez L.
  Coding Gene Single Nucleotide Polymorphism Mapping and Quantitative Trait Loci Detection for Physiological Reproductive Traits in Brook Charr, Salvelinus fontinalis.
  G3 (Bethesda). 2012 Mar;2(3):379-92 doi: 10.1534/g3.111.001867
  pmid: 22413092
• von Reumont BM, Jenner RA, Wills MA, Dell'ampio E, Pass G, Ebersberger I, Meyer B, Koenemann S, Iliffe TM, Stamatakis A, Niehuis O, Meusemann K, Misof B.
  Pancrustacean phylogeny in the light of new phylogenomic data: support for remipedia as the possible sister group of hexapoda.
  Mol Biol Evol. 2012 Mar;29(3):1031-45 doi: 10.1093/molbev/msr270
  pmid: 22049065
• Kyriazis GA, Soundarapandian MM, Tyrberg B.
  Sweet taste receptor signaling in beta cells mediates fructose-induced potentiation of glucose-stimulated insulin secretion.
  Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):E524-32 doi: 10.1073/pnas.1115183109
  pmid: 22315413
• Navaroli DM, Bellvé KD, Standley C, Lifshitz LM, Cardia J, Lambright D, Leonard D, Fogarty KE, Corvera S.
  Rabenosyn-5 defines the fate of the transferrin receptor following clathrin-mediated endocytosis.
  Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):E471-80 doi: 10.1073/pnas.1115495109
  pmid: 22308388
• Gijavanekar C, Strych U, Fofanov Y, Fox GE, Willson RC.
  Rare target enrichment for ultrasensitive PCR detection using cot-rehybridization and duplex-specific nuclease.
  Analytical Biochemistry. 2012 Feb 1;421(1):81-5 doi: 10.1016/j.ab.2011.11.010
  pmid: 22155054
• Cheng WY, Currier J, Bromberg PA, Silbajoris R, Simmons SO, Samet JM.
  Linking oxidative events to inflammatory and adaptive gene expression induced by exposure to an organic particulate matter component.
  Environ Health Perspect. 2012 Feb;120(2):267-74 doi: 10.1289/ehp.1104055
  pmid: 21997482
• Huang V, Place RF, Portnoy V, Wang J, Qi Z, Jia Z, Yu A, Shuman M, Yu J, Li LC.
  Upregulation of Cyclin B1 by miRNA and its implications in cancer.
  Nucleic Acids Res. 2012 Feb;40(4):1695-707 doi: 10.1093/nar/gkr934
  pmid: 22053081
• Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, Barker MS, Matvienko M, Yu Q, Turner KG, Pearl SA, Bell GD, Zou Y, Grassa C, Guggisberg A, Adams KL, Anderson JV, Horvath DP, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH.
  Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression.
  Am J Bot. 2012 Feb;99(2):209-18 doi: 10.3732/ajb.1100313
  pmid: 22058181
• Sanders KM, Zhu MH, Britton F, Koh SD, Ward SM.
  Anoctamins and gastrointestinal smooth muscle excitability.
  Exp Physiol. 2012 Feb;97(2):200-6 doi: 10.1113/expphysiol.2011.058248
  pmid: 22002868
• Svistunova DM, Musinova YR, Polyakov VY, Sheval EV.
  A simple method for the immunocytochemical detection of proteins inside nuclear structures that are inaccessible to specific antibodies.
  J Histochem Cytochem. 2012 Feb;60(2):152-8 doi: 10.1369/0022155411429704
  pmid: 22114257
• Swennenhuis JF, Foulk B, Coumans FA, Terstappen LW.
  Construction of repeat-free fluorescence in situ hybridization probes.
  Nucleic Acids Res. 2012 Feb;40(3):e20 doi: 10.1093/nar/gkr1123
  pmid: 22123742
• Yoshii H, Yoshii Y, Asai T, Furukawa T, Takaichi S, Fujibayashi Y.
  Photo-excitation of carotenoids causes cytotoxicity via singlet oxygen production.
  Biochem Biophys Res Commun. 2012 Jan 6;417(1):640-5 doi: 10.1016/j.bbrc.2011.12.024
  pmid: 22185691
• Li B, Shahid R, Peshkepija P, Zimmer M.
  Water Diffusion In And Out Of The β-Barrel Of GFP and The Fast Maturing Fluorescent Protein, TurboGFP.
  Chem Phys. 2012 Jan 1;392(1):143-148
  pmid: 22582003
• Lobert VH, Stenmark H.
  The ESCRT machinery mediates polarization of fibroblasts through regulation of myosin light chain.
  J Cell Sci. 2012 Jan 1;125(Pt 1):29-36 doi: 10.1242/jcs.088310
  pmid: 22266905
• Murakami T, Yang SP, Xie L, Kawano T, Fu D, Mukai A, Bohm C, Chen F, Robertson J, Suzuki H, Tartaglia GG, Vendruscolo M, Kaminski Schierle GS, Chan FT, Moloney A, Crowther D, Kaminski CF, Zhen M, St George-Hyslop P.
  ALS mutations in FUS cause neuronal dysfunction and death in Caenorhabditis elegans by a dominant gain-of-function mechanism.
  Hum Mol Genet. 2012 Jan 1;21(1):1-9 doi: 10.1093/hmg/ddr417
  pmid: 21949354
• Pigolev AV, Timoshevsky DS, Klimov VV.
  Effect of K223E and K226E amino acid substitutions in PsbO protein of photosystem 2 on stability and functional activity of the water-oxidizing complex in Chlamydomonas reinhardtii.
  Biochemistry (Mosc). 2012 Jan;77(1):71-7 doi: 10.1134/S0006297912010087
  pmid: 22339635
• Caysa H, Hoffmann S, Luetzkendorf J, Mueller LP, Unverzagt S, Mäder K, Mueller T.
  Monitoring of xenograft tumor growth and response to chemotherapy by non-invasive in vivo multispectral fluorescence imaging.
  PLoS One. 2012;7(10):e47927 doi: 10.1371/journal.pone.0047927
  pmid: 23112873
• Eaton CJ, Cabrera IE, Servin JA, Wright SJ, Cox MP, Borkovich KA.
  The Guanine Nucleotide Exchange Factor RIC8 Regulates Conidial Germination through Gα Proteins in Neurospora crassa.
  PLoS One. 2012;7(10):e48026 doi: 10.1371/journal.pone.0048026
  pmid: 23118921
• Feine I, Pinkas I, Salomon Y, Scherz A.
  Local oxidative stress expansion through endothelial cells--a key role for gap junction intercellular communication.
  PLoS One. 2012;7(7):e41633 doi: 10.1371/journal.pone.0041633
  pmid: 22911831
• Garczynski SF, Wanner KW, Unruh TR.
  Identification and initial characterization of the 3′ end of gene transcripts encoding putative members of the pheromone receptor subfamily in Lepidoptera.
  Insect Science. 2012;19(1):64-74 ISI:000299391800008 http://onlinelibrary.wiley.com
• Miranda JG, Weaver AL, Qin Y, Park JG, Stoddard CI, Lin MZ, Palmer AE.
  New alternately colored FRET sensors for simultaneous monitoring of Zn(2+) in multiple cellular locations.
  PLoS One. 2012;7(11):e49371 doi: 10.1371/journal.pone.0049371
  pmid: 23173058
• Pase L, Nowell CJ, Lieschke GJ.
  In vivo real-time visualization of leukocytes and intracellular hydrogen peroxide levels during a zebrafish acute inflammation assay.
  Methods Enzymol. 2012;506:135-56 doi: 10.1016/B978-0-12-391856-7.00032-9
  pmid: 22341223
• Savitsky AP, Rusanov AL, Zherdeva VV, Gorodnicheva TV, Khrenova MG, Nemukhin AV.
  FLIM-FRET Imaging of Caspase-3 Activity in Live Cells Using Pair of Red Fluorescent Proteins.
  Theranostics. 2012;2(2):215-26 doi: 10.7150/thno.3885
  pmid: 22375160
• Watakabe A, Kato S, Kobayashi K, Takaji M, Nakagami Y, Sadakane O, Ohtsuka M, Hioki H, Kaneko T, Okuno H, Kawashima T, Bito H, Kitamura Y, Yamamori T.
  Visualization of cortical projection neurons with retrograde TET-off lentiviral vector.
  PLoS One. 2012;7(10):e46157 doi: 10.1371/journal.pone.0046157
  pmid: 23071541

2011

• Luker KE, Mihalko LA, Schmidt BT, Lewin SA, Ray P, Shcherbo D, Chudakov DM, Luker GD.
  In vivo imaging of ligand receptor binding with Gaussia luciferase complementation.
  Nat Med. 2011 Dec 4;18(1):172-7 doi: 10.1038/nm.2590
  pmid: 22138753
• Kondrychyn I, Teh C, Garcia-Lecea M, Guan Y, Kang A, Korzh V.
  Zebrafish Enhancer TRAP transgenic line database ZETRAP 2.0.
  Zebrafish. 2011 Dec;8(4):181-2 doi: 10.1089/zeb.2011.0718
  pmid: 22181660
• Love NR, Thuret R, Chen Y, Ishibashi S, Sabherwal N, Paredes R, Alves-Silva J, Dorey K, Noble AM, Guille MJ, Sasai Y, Papalopulu N, Amaya E.
  pTransgenesis: a cross-species, modular transgenesis resource.
  Development. 2011 Dec;138(24):5451-8 doi: 10.1242/dev.066498
  pmid: 22110059
• Saito C, Uemura T, Awai C, Ueda T, Abe H, Nakano A.
  Qualitative difference between "bulb" membranes and other vacuolar membranes.
  Plant Signal Behav. 2011 Dec;6(12):1914-7
  pmid: 22105033
• Vanlangenakker N, Bertrand MJ, Bogaert P, Vandenabeele P, Vanden Berghe T.
  TNF-induced necroptosis in L929 cells is tightly regulated by multiple TNFR1 complex I and II members.
  Cell Death Dis. 2011 Nov 17;2:e230 doi: 10.1038/cddis.2011.111
  pmid: 22089168
• Egami Y, Fukuda M, Araki N.
  Rab35 regulates phagosome formation through recruitment of ACAP2 in macrophages during FcγR-mediated phagocytosis.
  J Cell Sci. 2011 Nov 1;124(Pt 21):3557-67 doi: 10.1242/jcs.083881
  pmid: 22045739
• Yi H, Cho YJ, Won S, Lee JE, Jin Yu H, Kim S, Schroth GP, Luo S, Chun J.
  Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq.
  Nucleic Acids Res. 2011 Nov 1;39(20):e140 doi: 10.1093/nar/gkr617
  pmid: 21880599
• Currie JD, Stewman S, Schimizzi G, Slep KC, Ma A, Rogers SL.
  The microtubule lattice and plus-end association of Drosophila Mini spindles is spatially regulated to fine-tune microtubule dynamics.
  Mol Biol Cell. 2011 Nov;22(22):4343-61 doi: 10.1091/mbc.E11-06-0520
  pmid: 21965297
• Glass C, Singla DK.
  MicroRNA-1 transfected embryonic stem cells enhance cardiac myocyte differentiation and inhibit apoptosis by modulating the PTEN/Akt pathway in the infarcted heart.
  Am J Physiol Heart Circ Physiol. 2011 Nov;301(5):H2038-49 doi: 10.1152/ajpheart.00271.2011
  pmid: 21856911
• Surakasi VP, Mohamed AA, Kim Y.
  RNA interference of β1 integrin subunit impairs development and immune responses of the beet armyworm, Spodoptera exigua.
  J Insect Physiol. 2011 Nov;57(11):1537-44 doi: 10.1016/j.jinsphys.2011.08.006
  pmid: 21856307
• Housley GD.
  Recent insights into the regulation of breathing.
  Auton Neurosci. 2011 Oct 28;164(1-2):3-5 doi: 10.1016/j.autneu.2011.08.002
  pmid: 21852203
• Werner ME, Hwang P, Huisman F, Taborek P, Yu CC, Mitchell BJ.
  Actin and microtubules drive differential aspects of planar cell polarity in multiciliated cells.
  J Cell Biol. 2011 Oct 3;195(1):19-26 doi: 10.1083/jcb.201106110
  pmid: 21949415
• Naoghare PK, Tak YK, Kim MJ, Han E, Song JM.
  Knock-down of argonaute 2 (AGO2) induces apoptosis in myeloid leukaemia cells and inhibits siRNA-mediated silencing of transfected oncogenes in HEK-293 cells.
  Basic Clin Pharmacol Toxicol. 2011 Oct;109(4):274-82 doi: 10.1111/j.1742-7843.2011.00716.x
  pmid: 21535412
• Wang X, Su B, Liu W, He X, Gao Y, Castellani RJ, Perry G, Smith MA, Zhu X.
  DLP1-dependent mitochondrial fragmentation mediates 1-methyl-4-phenylpyridinium toxicity in neurons: implications for Parkinson's disease.
  Aging Cell. 2011 Oct;10(5):807-23 doi: 10.1111/j.1474-9726.2011.00721.x
  pmid: 21615675
• Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D, Wong P, Samans B, Grimm C, Basiewicz M, Murat C, Martin F, Kogel KH.
  Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica.
  PLoS Pathog. 2011 Oct;7(10):e1002290 doi: 10.1371/journal.ppat.1002290
  pmid: 22022265
• Sartoretto JL, Kalwa H, Pluth MD, Lippard SJ, Michel T.
  Hydrogen peroxide differentially modulates cardiac myocyte nitric oxide synthesis.
  Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15792-7 doi: 10.1073/pnas.1111331108
  pmid: 21896719
• Anderson DD, Quintero CM, Stover PJ.
  Identification of a de novo thymidylate biosynthesis pathway in mammalian mitochondria.
  Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15163-8 doi: 10.1073/pnas.1103623108
  pmid: 21876188
• Chang KT, Niescier RF, Min KT.
  Mitochondrial matrix Ca²⁺ as an intrinsic signal regulating mitochondrial motility in axons.
  Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15456-61 doi: 10.1073/pnas.1106862108
  pmid: 21876166
• Rigault P, Boyle B, Lepage P, Cooke JE, Bousquet J, MacKay JJ.
  A white spruce gene catalog for conifer genome analyses.
  Plant Physiol. 2011 Sep;157(1):14-28 doi: 10.1104/pp.111.179663
  pmid: 21730200
• Rondanino C, Poland PA, Kinlough CL, Li H, Rbaibi Y, Myerburg MM, Al-bataineh MM, Kashlan OB, Pastor-Soler NM, Hallows KR, Weisz OA, Apodaca G, Hughey RP.
  Galectin-7 modulates the length of the primary cilia and wound repair in polarized kidney epithelial cells.
  Am J Physiol Renal Physiol. 2011 Sep;301(3):F622-33 doi: 10.1152/ajprenal.00134.2011
  pmid: 21677144
• Su CL, Chao YT, Alex Chang YC, Chen WC, Chen CY, Lee AY, Hwa KT, Shih MC.
  De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome.
  Plant Cell Physiol. 2011 Sep;52(9):1501-14 doi: 10.1093/pcp/pcr097
  pmid: 21771864
• Hayashi K, Suzuki A, Hirai S, Kurihara Y, Hoogenraad CC, Ohno S.
  Maintenance of dendritic spine morphology by partitioning-defective 1b through regulation of microtubule growth.
  J Neurosci. 2011 Aug 24;31(34):12094-103 doi: 10.1523/JNEUROSCI.0751-11.2011
  pmid: 21865452
• Nadell CD, Bassler BL.
  A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms.
  Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):14181-5 doi: 10.1073/pnas.1111147108
  pmid: 21825170
• Bekal S, Domier LL, Niblack TL, Lambert KN.
  Discovery and initial analysis of novel viral genomes in the soybean cyst nematode.
  J Gen Virol. 2011 Aug;92(Pt 8):1870-9 doi: 10.1099/vir.0.030585-0
  pmid: 21490246
• Ciesek S, Westhaus S, Wicht M, Wappler I, Henschen S, Sarrazin C, Hamdi N, Abdelaziz AI, Strassburg CP, Wedemeyer H, Manns MP, Pietschmann T, von Hahn T.
  Impact of intra- and interspecies variation of occludin on its function as coreceptor for authentic hepatitis C virus particles.
  J Virol. 2011 Aug;85(15):7613-21 doi: 10.1128/JVI.00212-11
  pmid: 21632765
• Tak YK, Naoghare PK, Han E, Song JM.
  VEGF inhibitor (Iressa) arrests histone deacetylase expression: single-cell cotransfection imaging cytometry for multi-target-multi-drug analysis.
  J Cell Physiol. 2011 Aug;226(8):2115-22 doi: 10.1002/jcp.22540
  pmid: 21520063
• Wang L, Toomey NL, Diaz LA, Walker G, Ramos JC, Barber GN, Ning S.
  Oncogenic IRFs provide a survival advantage for Epstein-Barr virus- or human T-cell leukemia virus type 1-transformed cells through induction of BIC expression.
  J Virol. 2011 Aug;85(16):8328-37 doi: 10.1128/JVI.00570-11
  pmid: 21680528
• Shagina IA, Bogdanova EA, Altshuler IM, Lukyanov SA, Shagin DA.
  Application of the duplex-specific nuclease for fast analysis of single nucleotide polymorphisms and detection of target DNA in complex PCR products.
  Bioorg Khim. 2011 Jul-Aug;37(4):522-9 (in Russian)
  pmid: 22096995
• Lombardi ML, Jaalouk DE, Shanahan CM, Burke B, Roux KJ, Lammerding J.
  The interaction between nesprins and sun proteins at the nuclear envelope is critical for force transmission between the nucleus and cytoskeleton.
  J Biol Chem. 2011 Jul 29;286(30):26743-53 doi: 10.1074/jbc.M111.233700
  pmid: 21652697
• Shtutman M, Baig M, Levina E, Hurteau G, Lim CU, Broude E, Nikiforov M, Harkins TT, Carmack CS, Ding Y, Wieland F, Buttyan R, Roninson IB.
  Tumor-specific silencing of COPZ2 gene encoding coatomer protein complex subunit ζ 2 renders tumor cells dependent on its paralogous gene COPZ1.
  Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12449-54 doi: 10.1073/pnas.1103842108
  pmid: 21746916
• Dragulescu-Andrasi A, Chan CT, De A, Massoud TF, Gambhir SS.
  Bioluminescence resonance energy transfer (BRET) imaging of protein-protein interactions within deep tissues of living subjects.
  Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):12060-5 doi: 10.1073/pnas.1100923108
  pmid: 21730157
• Liu M, Yuan M, Lou X, Mao H, Zheng D, Zou R, Zou N, Tang X, Zhao J.
  Label-free optical detection of single-base mismatches by the combination of nuclease and gold nanoparticles.
  Biosens Bioelectron. 2011 Jul 15;26(11):4294-300 doi: 10.1016/j.bios.2011.04.014
  pmid: 21605966
• Koga H, Martinez-Vicente M, Macian F, Verkhusha VV, Cuervo AM.
  A photoconvertible fluorescent reporter to track chaperone-mediated autophagy.
  Nat Commun. 2011 Jul 12;2:386 doi: 10.1038/ncomms1393
  pmid: 21750540
• Orth JD, Kohler RH, Foijer F, Sorger PK, Weissleder R, Mitchison TJ.
  Analysis of mitosis and antimitotic drug responses in tumors by in vivo microscopy and single-cell pharmacodynamics.
  Cancer Res. 2011 Jul 1;71(13):4608-16 doi: 10.1158/0008-5472.CAN-11-0412
  pmid: 21712408
• Pavlyukov MS, Antipova NV, Balashova MV, Vinogradova TV, Kopantzev EP, Shakhparonov MI.
  Survivin monomer plays an essential role in apoptosis regulation.
  J Biol Chem. 2011 Jul 1;286(26):23296-307 doi: 10.1074/jbc.M111.237586
  pmid: 21536684
• Snaith HA, Thompson J, Yates JR 3rd, Sawin KE.
  Characterization of Mug33 reveals complementary roles for actin cable-dependent transport and exocyst regulators in fission yeast exocytosis.
  J Cell Sci. 2011 Jul 1;124(Pt 13):2187-99 doi: 10.1242/jcs.084038
  pmid: 21652630
• Adamidi C, Wang Y, Gruen D, Mastrobuoni G, You X, Tolle D, Dodt M, Mackowiak SD, Gogol-Doering A, Oenal P, Rybak A, Ross E, Sánchez Alvarado A, Kempa S, Dieterich C, Rajewsky N, Chen W.
  De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.
  Genome Res. 2011 Jul;21(7):1193-200 doi: 10.1101/gr.113779.110
  pmid: 21536722
• Dower K, Rubins KH, Hensley LE, Connor JH.
  Development of Vaccinia reporter viruses for rapid, high content analysis of viral function at all stages of gene expression.
  Antiviral Res. 2011 Jul;91(1):72-80 doi: 10.1016/j.antiviral.2011.04.014
  pmid: 21569797
• Pletneva NV, Pletnev VZ, Shemiakina II, Chudakov DM, Artemyev I, Wlodawer A, Dauter Z, Pletnev S.
  Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore.
  Protein Sci. 2011 Jul;20(7):1265-74 doi: 10.1002/pro.654
  pmid: 21563226
• Feldmeyer B, Wheat CW, Krezdorn N, Rotter B, Pfenninger M.
  Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance.
  BMC Genomics. 2011 Jun 16;12:317 doi: 10.1186/1471-2164-12-317
  pmid: 21679424
• Vogel H, Altincicek B, Glöckner G, Vilcinskas A.
  A comprehensive transcriptome and immune-gene repertoire of the lepidopteran model host Galleria mellonella.
  BMC Genomics. 2011 Jun 11;12:308 doi: 10.1186/1471-2164-12-308
  pmid: 21663692
• Hojman P, Spanggaard I, Olsen CH, Gehl J, Gissel H.
  Calcium electrotransfer for termination of transgene expression in muscle.
  Hum Gene Ther. 2011 Jun;22(6):753-60 doi: 10.1089/hum.2010.209
  pmid: 21470044
• Luo H, Yang J, Jin H, Huang C, Fu J, Yang F, Gong H, Zeng S, Luo Q, Zhang Z.
  Tetrameric far-red fluorescent protein as a scaffold to assemble an octavalent peptide nanoprobe for enhanced tumor targeting and intracellular uptake in vivo.
  FASEB J. 2011 Jun;25(6):1865-73 doi: 10.1096/fj.10-174318
  pmid: 21350116
• Verreault M, Strutt D, Masin D, Fink D, Gill R, Bally MB.
  Development of glioblastoma cell lines expressing red fluorescence for non-invasive live imaging of intracranial tumors.
  Anticancer Res. 2011 Jun;31(6):2161-71
  pmid: 21737636
• Brickley K, Stephenson FA.
  Trafficking kinesin protein (TRAK)-mediated transport of mitochondria in axons of hippocampal neurons.
  J Biol Chem. 2011 May 20;286(20):18079-92 doi: 10.1074/jbc.M111.236018
  pmid: 21454691
• Milan M, Coppe A, Reinhardt R, Cancela LM, Leite RB, Saavedra C, Ciofi C, Chelazzi G, Patarnello T, Bortoluzzi S, Bargelloni L.
  Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring.
  BMC Genomics. 2011 May 12;12:234 doi: 10.1186/1471-2164-12-234
  pmid: 21569398
• Vegh RB, Solntsev KM, Kuimova MK, Cho S, Liang Y, Loo BL, Tolbert LM, Bommarius AS.
  Reactive oxygen species in photochemistry of the red fluorescent protein "Killer Red".
  Chem Commun (Camb). 2011 May 7;47(17):4887-9 doi: 10.1039/c0cc05713d
  pmid: 21359336
• Grosse-Wilde E, Kuebler LS, Bucks S, Vogel H, Wicher D, Hansson BS.
  Antennal transcriptome of Manduca sexta.
  Proc Natl Acad Sci U S A. 2011 May 3;108(18):7449-54 doi: 10.1073/pnas.1017963108
  pmid: 21498690
• Askar SF, Ramkisoensing AA, Schalij MJ, Bingen BO, Swildens J, van der Laarse A, Atsma DE, de Vries AA, Ypey DL, Pijnappels DA.
  Antiproliferative treatment of myofibroblasts prevents arrhythmias in vitro by limiting myofibroblast-induced depolarization.
  Cardiovasc Res. 2011 May 1;90(2):295-304 doi: 10.1093/cvr/cvr011
  pmid: 21233254
• Liu X, Shi R, Zou D, Li Z, Liu X, Chen Y, Yang X, Zhou Y, Zheng D.
  Positive selection vector using the KillerRed gene.
  Anal Biochem. 2011 May 1;412(1):120-2 doi: 10.1016/j.ab.2011.01.034
  pmid: 21284929
• Schoggins JW, Wilson SJ, Panis M, Murphy MY, Jones CT, Bieniasz P, Rice CM.
  A diverse range of gene products are effectors of the type I interferon antiviral response.
  Nature. 2011 Apr 28;472(7344):481-5 doi: 10.1038/nature09907
  pmid: 21478870
• McJunkin K, Mazurek A, Premsrirut PK, Zuber J, Dow LE, Simon J, Stillman B, Lowe SW.
  Reversible suppression of an essential gene in adult mice using transgenic RNA interference.
  Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):7113-8
  pmid: 21482754
• Morinaka A, Yamada M, Itofusa R, Funato Y, Yoshimura Y, Nakamura F, Yoshimura T, Kaibuchi K, Goshima Y, Hoshino M, Kamiguchi H, Miki H.
  Thioredoxin mediates oxidation-dependent phosphorylation of CRMP2 and growth cone collapse.
  Sci Signal. 2011 Apr 26;4(170):ra26 doi: 10.1126/scisignal.2001127
  pmid: 21521879
• Fraser BA, Weadick CJ, Janowitz I, Rodd FH, Hughes KA.
  Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome.
  BMC Genomics. 2011 Apr 20;12:202 doi: 10.1186/1471-2164-12-202
  pmid: 21507250
• Zhang Z, Wang Y, Wang S, Liu J, Warren W, Mitreva M, Walter RB.
  Transcriptome analysis of female and male Xiphophorus maculatus Jp 163 A.
  PLoS One. 2011 Apr 5;6(4):e18379 doi: 10.1371/journal.pone.0018379
  pmid: 21483681
• Francis SS, Sfakianos J, Lo B, Mellman I.
  A hierarchy of signals regulates entry of membrane proteins into the ciliary membrane domain in epithelial cells.
  J Cell Biol. 2011 Apr 4;193(1):219-33 doi: 10.1083/jcb.201009001
  pmid: 21444686
• Bowman S, Hubert S, Higgins B, Stone C, Kimball J, Borza T, Bussey JT, Simpson G, Kozera C, Curtis BA, Hall JR, Hori TS, Feng CY, Rise M, Booman M, Gamperl AK, Trippel E, Symonds J, Johnson SC, Rise ML.
  An integrated approach to gene discovery and marker development in Atlantic cod (Gadus morhua).
  Mar Biotechnol (NY). 2011 Apr;13(2):242-55 doi: 10.1007/s10126-010-9285-z
  pmid: 20396923
• Christodoulou DC, Gorham JM, Herman DS, Seidman JG.
  Construction of normalized RNA-seq libraries for next-generation sequencing using the crab duplex-specific nuclease.
  Curr Protoc Mol Biol. 2011 Apr;Chapter 4:Unit4.12 doi: 10.1002/0471142727.mb0412s94
  pmid: 21472699
• Goto S, Mano S, Nakamori C, Nishimura M.
  Arabidopsis ABERRANT PEROXISOME MORPHOLOGY9 is a peroxin that recruits the PEX1-PEX6 complex to peroxisomes.
  Plant Cell. 2011 Apr;23(4):1573-87 doi: 10.1105/tpc.110.080770
  pmid: 21487094
• Gu K, Chiam H, Tian D, Yin Z.
  Molecular cloning and expression of heteromeric ACCase subunit genes from Jatropha curcas.
  Plant Sci. 2011 Apr;180(4):642-9 doi: 10.1016/j.plantsci.2011.01.007
  pmid: 21421413
• Thierfelder S, Ostermann K, Göbel A, Rödel G.
  Vectors for glucose-dependent protein expression in Saccharomyces cerevisiae.
  Appl Biochem Biotechnol. 2011 Apr;163(8):954-64 doi: 10.1007/s12010-010-9099-5
  pmid: 20949330
• Whitfield AE, Rotenberg D, Aritua V, Hogenhout SA.
  Analysis of expressed sequence tags from Maize mosaic rhabdovirus-infected gut tissues of Peregrinus maidis reveals the presence of key components of insect innate immunity.
  Insect Mol Biol. 2011 Apr;20(2):225-42 doi: 10.1111/j.1365-2583.2010.01060.x
  pmid: 21199018
• Garbuz DG, Yushenova IA, Zatsepina OG, Przhiboro AA, Bettencourt BR, Evgen'ev MB.
  Organization and evolution of hsp70 clusters strikingly differ in two species of Stratiomyidae (Diptera) inhabiting thermally contrasting environments.
  BMC Evol Biol. 2011 Mar 22;11:74 doi: 10.1186/1471-2148-11-74
  pmid: 21426536
• Mader CC, Oser M, Magalhaes MA, Bravo-Cordero JJ, Condeelis J, Koleske AJ, Gil-Henn H.
  An EGFR-Src-Arg-cortactin pathway mediates functional maturation of invadopodia and breast cancer cell invasion.
  Cancer Res. 2011 Mar 1;71(5):1730-41 doi: 10.1158/0008-5472.CAN-10-1432
  pmid: 21257711
• Meerbrey KL, Hu G, Kessler JD, Roarty K, Li MZ, Fang JE, Herschkowitz JI, Burrows AE, Ciccia A, Sun T, Schmitt EM, Bernardi RJ, Fu X, Bland CS, Cooper TA, Schiff R, Rosen JM, Westbrook TF, Elledge SJ.
  The pINDUCER lentiviral toolkit for inducible RNA interference in vitro and in vivo.
  Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3665-70 doi: 10.1073/pnas.1019736108
  pmid: 21307310
• Korzh V, Teh C, Kondrychyn I, Chudakov DM, Lukyanov S.
  Visualizing compound transgenic zebrafish in development: a tale of green fluorescent protein and KillerRed.
  Zebrafish. 2011 Mar;8(1):23-9 doi: 10.1089/zeb.2011.0689
  pmid: 21348774
• Lee S, Shrestha S, Prasad SV, Kim Y.
  Role of a small G protein Ras in cellular immune response of the beet armyworm, Spodoptera exigua.
  J Insect Physiol. 2011 Mar;57(3):356-62 doi: 10.1016/j.jinsphys.2010.12.003
  pmid: 21167168
• Seeb JE, Pascal CE, Grau ED, Seeb LW, Templin WD, Harkins T, Roberts SB.
  Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids.
  Mol Ecol Resour. 2011 Mar;11(2):335-48 doi: 10.1111/j.1755-0998.2010.02936.x
  pmid: 21429141
• Shrestha S, Prasad SV, Kim Y.
  An immunological role of a PKC alpha binding protein (PICK1) expressed in the hemocytes of the beet armyworm, Spodoptera exigua.
  Comp Biochem Physiol B Biochem Mol Biol. 2011 Mar;158(3):216-22 doi: 10.1016/j.cbpb.2010.11.007
  pmid: 21122821
• Sutherland GT, Janitz M, Kril JJ.
  Understanding the pathogenesis of Alzheimer's disease: will RNA-Seq realize the promise of transcriptomics?
  J Neurochem. 2011 Mar;116(6):937-46 doi: 10.1111/j.1471-4159.2010.07157.x
  pmid: 21175619
• Dai ZM, Li R, Dai L, Yang JS, Chen S, Zeng QG, Yang F, Yang WJ.
  Determination in oocytes of the reproductive modes for the brine shrimp Artemia parthenogenetica.
  Biosci Rep. 2011 Feb;31(1):17-30 doi: 10.1042/BSR20090141
  pmid: 20353401
• Lee MY, Song YS, Ryu KH.
  Development of infectious transcripts from full-length and GFP-tagged cDNA clones of Pepper mottle virus and stable systemic expression of GFP in tobacco and pepper.
  Virus Res. 2011 Feb;155(2):487-94 doi: 10.1016/j.virusres.2010.12.004
  pmid: 21167886
• Maurya AK, Tan H, Souren M, Wang X, Wittbrodt J, Ingham PW.
  Integration of Hedgehog and BMP signalling by the engrailed2a gene in the zebrafish myotome.
  Development. 2011 Feb;138(4):755-65 doi: 10.1242/dev.062521
  pmid: 21266411
• Walther KA, Papke B, Sinn MB, Michel K, Kinkhabwala A.
  Precise measurement of protein interacting fractions with fluorescence lifetime imaging microscopy.
  Mol Biosyst. 2011 Feb;7(2):322-36 doi: 10.1039/c0mb00132e
  pmid: 21221430
• Watson DS, Platt VM, Cao L, Venditto VJ, Szoka FC Jr.
  Antibody response to polyhistidine-tagged peptide and protein antigens attached to liposomes via lipid-linked nitrilotriacetic acid in mice.
  Clin Vaccine Immunol. 2011 Feb;18(2):289-97 doi: 10.1128/CVI.00425-10
  pmid: 21159923
• Karatolos N, Pauchet Y, Wilkinson P, Chauhan R, Denholm I, Gorman K, Nelson DR, Bass C, ffrench-Constant RH, Williamson MS.
  Pyrosequencing the transcriptome of the greenhouse whitefly, Trialeurodes vaporariorum reveals multiple transcripts encoding insecticide targets and detoxifying enzymes.
  BMC Genomics. 2011 Jan 24;12:56 doi: 10.1186/1471-2164-12-56
  pmid: 21261962
• Waldeck W, Mueller G, Wiessler M, Tóth K, Braun K.
  Positioning effects of KillerRed inside of cells correlate with DNA strand breaks after activation with visible light.
  Int J Med Sci. 2011 Jan 21;8(2):97-105
  pmid: 21278894
• Ragàs X, Cooper LP, White JH, Nonell S, Flors C.
  Quantification of photosensitized singlet oxygen production by a fluorescent protein.
  Chemphyschem. 2011 Jan 17;12(1):161-5 doi: 10.1002/cphc.201000919
  pmid: 21226197
• Cornfine S, Himmel M, Kopp P, El Azzouzi K, Wiesner C, Krüger M, Rudel T, Linder S.
  The kinesin KIF9 and reggie/flotillin proteins regulate matrix degradation by macrophage podosomes.
  Mol Biol Cell. 2011 Jan 15;22(2):202-15 doi: 10.1091/mbc.E10-05-0394
  pmid: 21119006
• Logacheva MD, Kasianov AS, Vinogradov DV, Samigullin TH, Gelfand MS, Makeev VJ, Penin AA.
  De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum).
  BMC Genomics. 2011 Jan 13;12:30 doi: 10.1186/1471-2164-12-30
  pmid: 21232141
• Diéguez-Hurtado R, Martín J, Martínez-Corral I, Martínez MD, Megías D, Olmeda D, Ortega S.
  A Cre-reporter transgenic mouse expressing the far-red fluorescent protein Katushka.
  Genesis. 2011 Jan;49(1):36-45 doi: 10.1002/dvg.20685
  pmid: 21254335
• Elsner M, Gehrmann W, Lenzen S.
  Peroxisome-generated hydrogen peroxide as important mediator of lipotoxicity in insulin-producing cells.
  Diabetes. 2011 Jan;60(1):200-8 doi: 10.2337/db09-1401
  pmid: 20971967
• Figueiredo M, Lane S, Tang F, Liu BH, Hewinson J, Marina N, Kasymov V, Souslova EA, Chudakov DM, Gourine AV, Teschemacher AG, Kasparov S.
  Optogenetic experimentation on astrocytes.
  Exp Physiol. 2011 Jan;96(1):40-50 doi: 10.1113/expphysiol.2010.052597
  pmid: 21041318
• Herron CR, Lowery AM, Hollister PR, Reynolds AB, Vincent PA.
  p120 regulates endothelial permeability independently of its NH2 terminus and Rho binding.
  Am J Physiol Heart Circ Physiol. 2011 Jan;300(1):H36-48 doi: 10.1152/ajpheart.00812.2010
  pmid: 20971762
• Mutoh H, Perron A, Akemann W, Iwamoto Y, Knöpfel T.
  Optogenetic monitoring of membrane potentials.
  Exp Physiol. 2011 Jan;96(1):13-8 doi: 10.1113/expphysiol.2010.053942
  pmid: 20851856
• Noh SM, Ueti MW, Palmer GH, Munderloh UG, Felsheim RF, Brayton KA.
  Stability and tick transmission phenotype of gfp-transformed Anaplasma marginale through a complete in vivo infection cycle.
  Appl Environ Microbiol. 2011 Jan;77(1):330-4 doi: 10.1128/AEM.02096-10
  pmid: 21057014
• Nowack EC, Vogel H, Groth M, Grossman AR, Melkonian M, Glöckner G.
  Endosymbiotic gene transfer and transcriptional regulation of transferred genes in Paulinella chromatophora.
  Mol Biol Evol. 2011 Jan;28(1):407-22 doi: 10.1093/molbev/msq209
  pmid: 20702568
• Bogdanova EA, Barsova EV, Shagina IA, Scheglov A, Anisimova V, Vagner LL, Lukyanov SA, Shagin DA.
  Normalization of full-length-enriched cDNA.
  Methods Mol Biol. 2011;729:85-98 doi: 10.1007/978-1-61779-065-2_6
  pmid: 21365485
• Bogdanova EA, Shagina IA, Yanushevich YG, Vagner LL, Lukyanov SA, Shagin DA.
  Preparation of prokaryotic cDNA for full-scale transcriptome analysis.
  Russian Journal of Bioorganic Chemistry. 2011;37(6):775-8 ISI:000297344600012 http://www.springerlink.com
• Davis L, Maizels N.
  DNA nicks promote efficient and safe targeted gene correction.
  PLoS One. 2011;6(9):e23981 doi: 10.1371/journal.pone.0023981
  pmid: 21912657
• Dubey A, Farmer A, Schlueter J, Cannon SB, Abernathy B, Tuteja R, Woodward J, Shah T, Mulasmanovic B, Kudapa H, Raju NL, Gothalwal R, Pande S, Xiao Y, Town CD, Singh NK, May GD, Jackson S, Varshney RK.
  Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.).
  DNA Res. 2011;18(3):153-64 doi: 10.1093/dnares/dsr007
  pmid: 21565938
• Garbuz DG, Astakhova LN, Zatsepina OG, Arkhipova IR, Nudler E, Evgen'ev MB.
  Functional organization of hsp70 cluster in camel (Camelus dromedarius) and other mammals.
  PLoS One. 2011;6(11):e27205 doi: 10.1371/journal.pone.0027205
  pmid: 22096537
• Ke T, Dong C-H, Mao H, Zhao Y-Z, Liu H-Y, Liu S-Y.
  Construction of a Normalized Full-Length cDNA Library of Sesame Developing Seed by DSN and SMART™.
  Agricultural Sciences in China. 2011;10(7):1004-9
• Shagina IA, Bogdanova EA, Altshuler IM, Lukyanov SA, Shagin DA.
  The Use of Duplex-Specific Crab Nuclease for Rapid Analysis of Single-Nucleotide Polymorphisms and the Detection of DNA Targets in Complex PCR Products.
  Russian Journal of Bioorganic Chemistry. 2011;37(4):464-71 ISI:000295533100010 http://www.springerlink.com
• Srivastava A, Rogers WL, Breton CM, Cai L, Malmberg RL.
  Transcriptome analysis of sarracenia, an insectivorous plant.
  DNA Res. 2011;18(4):253-61 doi: 10.1093/dnares/dsr014
  pmid: 21676972
• Subach OM, Cranfill PJ, Davidson MW, Verkhusha VV.
  An enhanced monomeric blue fluorescent protein with the high chemical stability of the chromophore.
  PLoS One. 2011;6(12):e28674
  pmid: 22174863
• Wang Q, Byrnes LJ, Shui B, Röhrig UF, Singh A, Chudakov DM, Lukyanov S, Zipfel WR, Kotlikoff MI, Sondermann H.
  Molecular mechanism of a green-shifted, pH-dependent red fluorescent protein mKate variant.
  PLoS One. 2011;6(8):e23513 doi: 10.1371/journal.pone.0023513
  pmid: 21887263
• Zhao Y, Shay JW, Wright WE.
  Telomere G-overhang length measurement method 1: the DSN method.
  Methods Mol Biol. 2011;735:47-54 doi: 10.1007/978-1-61779-092-8_5
  pmid: 21461810

2010

• Lee A, Mathuru AS, Teh C, Kibat C, Korzh V, Penney TB, Jesuthasan S.
  The habenula prevents helpless behavior in larval zebrafish.
  Curr Biol. 2010 Dec 21;20(24):2211-6 doi: 10.1016/j.cub.2010.11.025
  pmid: 21145744
• Pauchet Y, Wilkinson P, Chauhan R, Ffrench-Constant RH.
  Diversity of beetle genes encoding novel plant cell wall degrading enzymes.
  PLoS One. 2010 Dec 17;5(12):e15635 doi: 10.1371/journal.pone.0015635
  pmid: 21179425
• Carvalho RA, Azeredo-Espin AM, Torres TT.
  Deep sequencing of New World screw-worm transcripts to discover genes involved in insecticide resistance.
  BMC Genomics. 2010 Dec 8;11:695 doi: 10.1186/1471-2164-11-695
  pmid: 21143848
• Gong P, Pirooznia M, Guan X, Perkins EJ.
  Design, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetida.
  PLoS One. 2010 Dec 8;5(12):e14266 doi: 10.1371/journal.pone.0014266
  pmid: 21170345
• Destaing O, Planus E, Bouvard D, Oddou C, Badowski C, Bossy V, Raducanu A, Fourcade B, Albiges-Rizo C, Block MR.
  beta1A integrin is a master regulator of invadosome organization and function.
  Mol Biol Cell. 2010 Dec;21(23):4108-19 doi: 10.1091/mbc.E10-07-0580
  pmid: 20926684
• Prentis PJ, Woolfit M, Thomas-Hall SR, Ortiz-Barrientos D, Pavasovic A, Lowe AJ, Schenk PM.
  Massively parallel sequencing and analysis of expressed sequence tags in a successful invasive plant.
  Ann Bot. 2010 Dec;106(6):1009-17 doi: 10.1093/aob/mcq201
  pmid: 20929896
• Rusanov AL, Ivashina TV, Vinokurov LM, Fiks II, Orlova AG, Turchin IV, Meerovich IG, Zherdeva VV, Savitsky AP.
  Lifetime imaging of FRET between red fluorescent proteins.
  J Biophotonics. 2010 Dec;3(12):774-83 doi: 10.1002/jbio.201000065
  pmid: 20925107
• Nunez-Cruz S, Connolly DC, Scholler N.
  An orthotopic model of serous ovarian cancer in immunocompetent mice for in vivo tumor imaging and monitoring of tumor immune responses.
  J Vis Exp. 2010 Nov 28;(45) doi: 10.3791/2146
  pmid: 21178956
• Coppe A, Pujolar JM, Maes GE, Larsen PF, Hansen MM, Bernatchez L, Zane L, Bortoluzzi S.
  Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel.
  BMC Genomics. 2010 Nov 16;11:635 doi: 10.1186/1471-2164-11-635
  pmid: 21080939
• Erdel F, Schubert T, Marth C, Längst G, Rippe K.
  Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites.
  Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19873-8 doi: 10.1073/pnas.1003438107
  pmid: 20974961
• Yang P, Li X, Shipp MJ, Shockey JM, Cahoon EB.
  Mining the bitter melon (momordica charantia l.) seed transcriptome by 454 analysis of non-normalized and normalized cDNA populations for conjugated fatty acid metabolism-related genes.
  BMC Plant Biol. 2010 Nov 16;10:250 doi: 10.1186/1471-2229-10-250
  pmid: 21080948
• Ohashi Y, Munro S.
  Membrane delivery to the yeast autophagosome from the Golgi-endosomal system.
  Mol Biol Cell. 2010 Nov 15;21(22):3998-4008 doi: 10.1091/mbc.E10-05-0457
  pmid: 20861302
• Teh C, Chudakov DM, Poon KL, Mamedov IZ, Sek JY, Shidlovsky K, Lukyanov S, Korzh V.
  Optogenetic in vivo cell manipulation in KillerRed-expressing zebrafish transgenics.
  BMC Dev Biol. 2010 Nov 2;10:110 doi: 10.1186/1471-213X-10-110
  pmid: 21040591
• Henry JJ, Perry KJ, Fukui L, Alvi N.
  Differential localization of mRNAs during early development in the mollusc, Crepidula fornicata.
  Integr Comp Biol. 2010 Nov;50(5):720-33 doi: 10.1093/icb/icq088
  pmid: 21558235
• Lambert JD, Chan XY, Spiecker B, Sweet HC.
  Characterizing the embryonic transcriptome of the snail Ilyanassa.
  Integr Comp Biol. 2010 Nov;50(5):768-77 doi: 10.1093/icb/icq121
  pmid: 21558239
• Lee EK, Jin YW, Park JH, Yoo YM, Hong SM, Amir R, Yan Z, Kwon E, Elfick A, Tomlinson S, Halbritter F, Waibel T, Yun BW, Loake GJ.
  Cultured cambial meristematic cells as a source of plant natural products.
  Nat Biotechnol. 2010 Nov;28(11):1213-7 doi: 10.1038/nbt.1693
  pmid: 20972422
• Norris MH, Kang Y, Wilcox B, Hoang TT.
  Stable, site-specific fluorescent tagging constructs optimized for burkholderia species.
  Appl Environ Microbiol. 2010 Nov;76(22):7635-40 doi: 10.1128/AEM.01188-10
  pmid: 20851961
• Del Bene F, Wyart C, Robles E, Tran A, Looger L, Scott EK, Isacoff EY, Baier H.
  Filtering of visual information in the tectum by an identified neural circuit.
  Science. 2010 Oct 29;330(6004):669-73 doi: 10.1126/science.1192949
  pmid: 21030657
• Lukyanov KA, Serebrovskaya EO, Lukyanov S, Chudakov DM.
  Fluorescent proteins as light-inducible photochemical partners.
  Photochem Photobiol Sci. 2010 Oct 28;9(10):1301-6 doi: 10.1039/c0pp00114g
  pmid: 20672171
• Roy A, Carpentier P, Bourgeois D, Field M.
  Diffusion pathways of oxygen species in the phototoxic fluorescent protein KillerRed.
  Photochem Photobiol Sci. 2010 Oct 28;9(10):1342-50 doi: 10.1039/c0pp00141d
  pmid: 20820672
• Bedoya L, Martínez F, Rubio L, Daròs JA.
  Simultaneous equimolar expression of multiple proteins in plants from a disarmed potyvirus vector.
  J Biotechnol. 2010 Oct 15;150(2):268-75 doi: 10.1016/j.jbiotec.2010.08.006
  pmid: 20728479
• Liu X, Liu X, Zhou Y, Zou D, Shi R, Li Z, Zheng D.
  T vector bearing KillerRed protein marker for red/white cloning screening.
  Anal Biochem. 2010 Oct 15;405(2):272-4 doi: 10.1016/j.ab.2010.06.031
  pmid: 20599648
• Liu C, Cheng Q, Nguyen T, Bonanno JA.
  Knockdown of NBCe1 in vivo compromises the corneal endothelial pump.
  Invest Ophthalmol Vis Sci. 2010 Oct;51(10):5190-7 doi: 10.1167/iovs.10-5257
  pmid: 20445126
• Shcherbo D, Shemiakina II, Ryabova AV, Luker KE, Schmidt BT, Souslova EA, Gorodnicheva TV, Strukova L, Shidlovskiy KM, Britanova OV, Zaraisky AG, Lukyanov KA, Loschenov VB, Luker GD, Chudakov DM.
  Near-infrared fluorescent proteins.
  Nat Methods. 2010 Oct;7(10):827-9 doi: 10.1038/nmeth.1501
  pmid: 20818379
• Louro B, Passos AL, Souche EL, Tsigenopoulos C, Beck A, Lagnel J, Bonhomme F, Cancela L, Cerdà J, Clark MS, Lubzens E, Magoulas A, Planas JV, Volckaert FA, Reinhardt R, Canario AV.
  Gilthead sea bream (Sparus auratus) and European sea bass (Dicentrarchus labrax) expressed sequence tags: Characterization, tissue-specific expression and gene markers.
  Mar Genomics. 2010 Sep-Dec;3(3-4):179-91 doi: 10.1016/j.margen.2010.09.005
  pmid: 21798212
• Enyedi B, Várnai P, Geiszt M.
  Redox state of the endoplasmic reticulum is controlled by Ero1L-alpha and intraluminal calcium.
  Antioxid Redox Signal. 2010 Sep 15;13(6):721-9 doi: 10.1089/ars.2009.2880
  pmid: 20095866
• Miller EW, Dickinson BC, Chang CJ.
  Aquaporin-3 mediates hydrogen peroxide uptake to regulate downstream intracellular signaling.
  Proc Natl Acad Sci U S A. 2010 Sep 7;107(36):15681-6 doi: 10.1073/pnas.1005776107
  pmid: 20724658
• Narayanan D, Xi Q, Pfeffer LM, Jaggar JH.
  Mitochondria control functional CaV1.2 expression in smooth muscle cells of cerebral arteries.
  Circ Res. 2010 Sep 3;107(5):631-41 doi: 10.1161/CIRCRESAHA.110.224345
  pmid: 20616314
• Galindo J, Grahame JW, Butlin RK.
  An EST-based genome scan using 454 sequencing in the marine snail Littorina saxatilis.
  J Evol Biol. 2010 Sep 1;23(9):2004-16 doi: 10.1111/j.1420-9101.2010.02071.x
  pmid: 20695960
• K Gedye, J Gonzalez-Hernandez, Y Ban, X Ge, J Thimmapuram, F Sun, Ch Wright, Sh Ali, A Boe, and V Owens.
  Investigation of the Transcriptome of Prairie Cord Grass, a New Cellulosic Biomass Crop.
  THE PLANT GENOME. 2010 Sep;3(2):69-80 https://www.crops.org
• Lin LT, Noyce RS, Pham TN, Wilson JA, Sisson GR, Michalak TI, Mossman KL, Richardson CD.
  Replication of subgenomic hepatitis C virus replicons in mouse fibroblasts is facilitated by deletion of interferon regulatory factor 3 and expression of liver-specific microRNA 122.
  J Virol. 2010 Sep;84(18):9170-80 doi: 10.1128/JVI.00559-10
  pmid: 20592082
• Pizzimenti S, Menegatti E, Berardi D, Toaldo C, Pettazzoni P, Minelli R, Giglioni B, Cerbone A, Dianzani MU, Ferretti C, Barrera G.
  4-Hydroxynonenal, a lipid peroxidation product of dietary polyunsaturated fatty acids, has anticarcinogenic properties in colon carcinoma cell lines through the inhibition of telomerase activity.
  J Nutr Biochem. 2010 Sep;21(9):818-26 doi: 10.1016/j.jnutbio.2009.06.005
  pmid: 19733043
• Fantin A, Vieira JM, Gestri G, Denti L, Schwarz Q, Prykhozhij S, Peri F, Wilson SW, Ruhrberg C.
  Tissue macrophages act as cellular chaperones for vascular anastomosis downstream of VEGF-mediated endothelial tip cell induction.
  Blood. 2010 Aug 5;116(5):829-40 doi: 10.1182/blood-2009-12-257832
  pmid: 20404134
• Guo F, Liu B, Tang F, Lane S, Souslova EA, Chudakov DM, Paton JF, Kasparov S.
  Astroglia are a possible cellular substrate of angiotensin(1-7) effects in the rostral ventrolateral medulla.
  Cardiovasc Res. 2010 Aug 1;87(3):578-84 doi: 10.1093/cvr/cvq059
  pmid: 20200044
• Li ZH, Dulyaninova NG, House RP, Almo SC, Bresnick AR.
  S100A4 regulates macrophage chemotaxis.
  Mol Biol Cell. 2010 Aug 1;21(15):2598-610 doi: 10.1091/mbc.E09-07-0609
  pmid: 20519440
• Dudgeon DD, Shinde S, Hua Y, Shun TY, Lazo JS, Strock CJ, Giuliano KA, Taylor DL, Johnston PA, Johnston PA.
  Implementation of a 220,000-compound HCS campaign to identify disruptors of the interaction between p53 and hDM2 and characterization of the confirmed hits.
  J Biomol Screen. 2010 Aug;15(7):766-82 doi: 10.1177/1087057110375304
  pmid: 20639499
• Dudgeon DD, Shinde SN, Shun TY, Lazo JS, Strock CJ, Giuliano KA, Taylor DL, Johnston PA, Johnston PA.
  Characterization and optimization of a novel protein-protein interaction biosensor high-content screening assay to identify disruptors of the interactions between p53 and hDM2.
  Assay Drug Dev Technol. 2010 Aug;8(4):437-58 doi: 10.1089/adt.2010.0281
  pmid: 20662736
• Izumiya M, Okamoto K, Tsuchiya N, Nakagama H.
  Functional screening using a microRNA virus library and microarrays: a new high-throughput assay to identify tumor-suppressive microRNAs.
  Carcinogenesis. 2010 Aug;31(8):1354-9 doi: 10.1093/carcin/bgq112
  pmid: 20525881
• Rotenberg D, Whitfield AE.
  Analysis of expressed sequence tags for Frankliniella occidentalis, the western flower thrips.
  Insect Mol Biol. 2010 Aug;19(4):537-51 doi: 10.1111/j.1365-2583.2010.01012.x
  pmid: 20522119
• Wang J, Xia Y.
  Construction and preliminary analysis of a normalized cDNA library from Locusta migratoria manilensis topically infected with Metarhizium anisopliae var. acridum.
  J Insect Physiol. 2010 Aug;56(8):998-1002 doi: 10.1016/j.jinsphys.2010.05.009
  pmid: 20470782
• Wang YY, Li Z, Jiao D, Zhang Z, Shao X, Yuan J, Yu P.
  RNA interference reveals a requirement for both p18INK4c and p27Kip1 in B lymphopoiesis.
  J Mol Cell Biol. 2010 Aug;2(4):209-16 doi: 10.1093/jmcb/mjq013
  pmid: 20671115
• Gourine AV, Kasymov V, Marina N, Tang F, Figueiredo MF, Lane S, Teschemacher AG, Spyer KM, Deisseroth K, Kasparov S.
  Astrocytes control breathing through pH-dependent release of ATP.
  Science. 2010 Jul 30;329(5991):571-5 doi: 10.1126/science.1190721
  pmid: 20647426
• Torii T, Miyamoto Y, Sanbe A, Nishimura K, Yamauchi J, Tanoue A.
  Cytohesin-2/ARNO, through its interaction with focal adhesion adaptor protein paxillin, regulates preadipocyte migration via the downstream activation of Arf6.
  J Biol Chem. 2010 Jul 30;285(31):24270-81 doi: 10.1074/jbc.M110.125658
  pmid: 20525696
• Friedrich MW, Aramuni G, Mank M, Mackinnon JA, Griesbeck O.
  Imaging CREB activation in living cells.
  J Biol Chem. 2010 Jul 23;285(30):23285-95 doi: 10.1074/jbc.M110.124545
  pmid: 20484048
• Rawat A, Gust KA, Deng Y, Garcia-Reyero N, Quinn MJ Jr, Johnson MS, Indest KJ, Elasri MO, Perkins EJ.
  From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite.
  Physiol Genomics. 2010 Jul 7;42(2):219-35 doi: 10.1152/physiolgenomics.00022.2010
  pmid: 20406850
• Gothelf A, Eriksen J, Hojman P, Gehl J.
  Duration and level of transgene expression after gene electrotransfer to skin in mice.
  Gene Ther. 2010 Jul;17(7):839-45 doi: 10.1038/gt.2010.35
  pmid: 20376097
• Klein C, Scoggin KE, Ealy AD, Troedsson MH.
  Transcriptional profiling of equine endometrium during the time of maternal recognition of pregnancy.
  Biol Reprod. 2010 Jul;83(1):102-13 doi: 10.1095/biolreprod.109.081612
  pmid: 20335638
• Kohaar I, Ploss A, Korol E, Mu K, Schoggins JW, O'Brien TR, Rice CM, Prokunina-Olsson L.
  Splicing diversity of the human OCLN gene and its biological significance for hepatitis C virus entry.
  J Virol. 2010 Jul;84(14):6987-94 doi: 10.1128/JVI.00196-10
  pmid: 20463075
• Owen DM, Rentero C, Rossy J, Magenau A, Williamson D, Rodriguez M, Gaus K.
  PALM imaging and cluster analysis of protein heterogeneity at the cell surface.
  J Biophotonics. 2010 Jul;3(7):446-54 doi: 10.1002/jbio.200900089
  pmid: 20148419
• Wu RF, Ma Z, Liu Z, Terada LS.
  Nox4-derived H₂O₂ mediates endoplasmic reticulum signaling through local Ras activation.
  Mol Cell Biol. 2010 Jul;30(14):3553-68 doi: 10.1128/MCB.01445-09
  pmid: 20457808
• Babik W, Stuglik M, Qi W, Kuenzli M, Kuduk K, Koteja P, Radwan J.
  Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate.
  BMC Genomics. 2010 Jun 21;11:390 doi: 10.1186/1471-2164-11-390
  pmid: 20565972
• Liu F, Wang D, Fu J, Sun G, Shen Y, Dong L, Zhang B, Hu S, Li J.
  Identification of immune-relevant genes by expressed sequence tag analysis of head kidney from grass carp (Ctenopharyngodon idella).
  Comp Biochem Physiol Part D Genomics Proteomics. 2010 Jun;5(2):116-23 doi: 10.1016/j.cbd.2010.02.003
  pmid: 20403773
• Shagina I, Bogdanova E, Mamedov IZ, Lebedev Y, Lukyanov S, Shagin D.
  Normalization of genomic DNA using duplex-specific nuclease.
  Biotechniques. 2010 Jun;48(6):455-9 doi: 10.2144/000113422
  pmid: 20569220
• Zhou P, Zhang Z, Wang Y, Zou Z, Xie F.
  EST analysis and identification of gonad-related genes from the normalized cDNA library of large yellow croaker, Larimichthys crocea.
  Comp Biochem Physiol Part D Genomics Proteomics. 2010 Jun;5(2):89-97 doi: 10.1016/j.cbd.2010.01.002
  pmid: 20403775
• Fruhwirth GO, Ameer-Beg S, Cook R, Watson T, Ng T, Festy F.
  Fluorescence lifetime endoscopy using TCSPC for the measurement of FRET in live cells.
  Opt Express. 2010 May 24;18(11):11148-58 doi: 10.1364/OE.18.011148
  pmid: 20588974
• Veeraraghavalu K, Choi SH, Zhang X, Sisodia SS.
  Presenilin 1 mutants impair the self-renewal and differentiation of adult murine subventricular zone-neuronal progenitors via cell-autonomous mechanisms involving notch signaling.
  J Neurosci. 2010 May 19;30(20):6903-15 doi: 10.1523/JNEUROSCI.0527-10.2010
  pmid: 20484632
• Durrett TP, McClosky DD, Tumaney AW, Elzinga DA, Ohlrogge J, Pollard M.
  A distinct DGAT with sn-3 acetyltransferase activity that synthesizes unusual, reduced-viscosity oils in Euonymus and transgenic seeds.
  Proc Natl Acad Sci U S A. 2010 May 18;107(20):9464-9 doi: 10.1073/pnas.1001707107
  pmid: 20439724
• Ameziane-El-Hassani R, Boufraqech M, Lagente-Chevallier O, Weyemi U, Talbot M, Métivier D, Courtin F, Bidart JM, El Mzibri M, Schlumberger M, Dupuy C.
  Role of H₂O₂ in RET/PTC1 chromosomal rearrangement produced by ionizing radiation in human thyroid cells.
  Cancer Res. 2010 May 15;70(10):4123-32 doi: 10.1158/0008-5472.CAN-09-4336
  pmid: 20424115
• Subach FV, Patterson GH, Renz M, Lippincott-Schwartz J, Verkhusha VV.
  Bright monomeric photoactivatable red fluorescent protein for two-color super-resolution sptPALM of live cells.
  J Am Chem Soc. 2010 May 12;132(18):6481-91 doi: 10.1021/ja100906g
  pmid: 20394363
• Butler MC, Itotia PN, Sullivan JM.
  A high-throughput biophotonics instrument to screen for novel ocular photosensitizing therapeutic agents.
  Invest Ophthalmol Vis Sci. 2010 May;51(5):2705-20 doi: 10.1167/iovs.08-2862
  pmid: 19834043
• Löw K, Blesch A, Herrmann J, Tuszynski MH.
  A dual promoter lentiviral vector for the in vivo evaluation of gene therapeutic approaches to axon regeneration after spinal cord injury.
  Gene Ther. 2010 May;17(5):577-91 doi: 10.1038/gt.2010.14
  pmid: 20200564
• Slanina H, König A, Hebling S, Hauck CR, Frosch M, Schubert-Unkmeir A.
  Entry of Neisseria meningitidis into mammalian cells requires the Src family protein tyrosine kinases.
  Infect Immun. 2010 May;78(5):1905-14 doi: 10.1128/IAI.01267-09
  pmid: 20176789
• Lee BY, Howe AE, Conte MA, D'Cotta H, Pepey E, Baroiller JF, di Palma F, Carleton KL, Kocher TD.
  An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags.
  BMC Genomics. 2010 Apr 30;11:278 doi: 10.1186/1471-2164-11-278
  pmid: 20433739
• Subach OM, Malashkevich VN, Zencheck WD, Morozova KS, Piatkevich KD, Almo SC, Verkhusha VV.
  Structural characterization of acylimine-containing blue and red chromophores in mTagBFP and TagRFP fluorescent proteins.
  Chem Biol. 2010 Apr 23;17(4):333-41 doi: 10.1016/j.chembiol.2010.03.005
  pmid: 20416505
• Berepiki A, Lichius A, Shoji JY, Tilsner J, Read ND.
  F-actin dynamics in Neurospora crassa.
  Eukaryot Cell. 2010 Apr;9(4):547-57 doi: 10.1128/EC.00253-09
  pmid: 20139238
• Bogdanova EA, Shagina I, Barsova EV, Kelmanson I, Shagin DA, Lukyanov SA.
  Normalizing cDNA libraries.
  Curr Protoc Mol Biol. 2010 Apr;Chapter 5:Unit 5.12.1-27 doi: 10.1002/0471142727.mb0512s90
  pmid: 20373503
• Chkalina AV, Zviagin IV, Mamedov IZ, Britanova OV, Staroverov DB, Lebedev IuB.
  The oligoclonal expansion of T cells: study of its stability over time.
  Bioorg Khim. 2010 Mar-Apr;36(2):206-14 http://www.springerlink.com
  pmid: 20531479
• Fujimoto M, Arimura S, Ueda T, Takanashi H, Hayashi Y, Nakano A, Tsutsumi N.
  Arabidopsis dynamin-related proteins DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
  Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):6094-9 doi: 10.1073/pnas.0913562107
  pmid: 20231465
• Piatkevich KD, Hulit J, Subach OM, Wu B, Abdulla A, Segall JE, Verkhusha VV.
  Monomeric red fluorescent proteins with a large Stokes shift.
  Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5369-74 doi: 10.1073/pnas.0914365107
  pmid: 20212155
• Zhu X, Caplan J, Mamillapalli P, Czymmek K, Dinesh-Kumar SP.
  Function of endoplasmic reticulum calcium ATPase in innate immunity-mediated programmed cell death.
  EMBO J. 2010 Mar 3;29(5):1007-18 doi: 10.1038/emboj.2009.402
  pmid: 20075858
• Buggs RJ, Chamala S, Wu W, Gao L, May GD, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB.
  Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.
  Mol Ecol. 2010 Mar;19 Suppl 1:132-46 doi: 10.1111/j.1365-294X.2009.04469.x
  pmid: 20331776
• Ro S, Park C, Jin J, Zheng H, Blair PJ, Redelman D, Ward SM, Yan W, Sanders KM.
  A model to study the phenotypic changes of interstitial cells of Cajal in gastrointestinal diseases.
  Gastroenterology. 2010 Mar;138(3):1068-78.e1-2 doi: 10.1053/j.gastro.2009.11.007
  pmid: 19917283
• Swan LE, Tomasini L, Pirruccello M, Lunardi J, De Camilli P.
  Two closely related endocytic proteins that share a common OCRL-binding motif with APPL1.
  Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3511-6 doi: 10.1073/pnas.0914658107
  pmid: 20133602
• Sadd BM, Kube M, Klages S, Reinhardt R, Schmid-Hempel P.
  Analysis of a normalised expressed sequence tag (EST) library from a key pollinator, the bumblebee Bombus terrestris.
  BMC Genomics. 2010 Feb 15;11:110 doi: 10.1186/1471-2164-11-110
  pmid: 20156341
• Niino Y, Hotta K, Oka K.
  Blue fluorescent cGMP sensor for multiparameter fluorescence imaging.
  PLoS One. 2010 Feb 11;5(2):e9164 doi: 10.1371/journal.pone.0009164
  pmid: 20161796
• Felsheim RF, Chavez AS, Palmer GH, Crosby L, Barbet AF, Kurtti TJ, Munderloh UG.
  Transformation of Anaplasma marginale.
  Vet Parasitol. 2010 Feb 10;167(2-4):167-74 doi: 10.1016/j.vetpar.2009.09.018
  pmid: 19837516
• Shalek AK, Robinson JT, Karp ES, Lee JS, Ahn DR, Yoon MH, Sutton A, Jorgolli M, Gertner RS, Gujral TS, MacBeath G, Yang EG, Park H.
  Vertical silicon nanowires as a universal platform for delivering biomolecules into living cells.
  Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1870-5 doi: 10.1073/pnas.0909350107
  pmid: 20080678
• Krivushin KV, Shcherbakova VA, Petrovskaya LE, Rivkina EM.
  Methanobacterium veterum sp. nov., from ancient Siberian permafrost.
  Int J Syst Evol Microbiol. 2010 Feb;60(Pt 2):455-9 doi: 10.1099/ijs.0.011205-0
  pmid: 19654368
• Pauchet Y, Wilkinson P, Vogel H, Nelson DR, Reynolds SE, Heckel DG, ffrench-Constant RH.
  Pyrosequencing the Manduca sexta larval midgut transcriptome: messages for digestion, detoxification and defence.
  Insect Mol Biol. 2010 Feb;19(1):61-75 doi: 10.1111/j.1365-2583.2009.00936.x
  pmid: 19909380
• Vogel H, Heidel AJ, Heckel DG, Groot AT.
  Transcriptome analysis of the sex pheromone gland of the noctuid moth Heliothis virescens.
  BMC Genomics. 2010 Jan 14;11:29 doi: 10.1186/1471-2164-11-29
  pmid: 20074338
• Suenaga T, Satoh T, Somboonthum P, Kawaguchi Y, Mori Y, Arase H.
  Myelin-associated glycoprotein mediates membrane fusion and entry of neurotropic herpesviruses.
  Proc Natl Acad Sci U S A. 2010 Jan 12;107(2):866-71 doi: 10.1073/pnas.0913351107
  pmid: 20080767
• Costa A, Drago I, Behera S, Zottini M, Pizzo P, Schroeder JI, Pozzan T, Lo Schiavo F.
  H₂O₂ in plant peroxisomes: an in vivo analysis uncovers a Ca(2+)-dependent scavenging system.
  Plant J. 2010 Jun 1;62(5):760-72 doi: 10.1111/j.1365-313X.2010.04190.x
  pmid: 20230493
• Dang-Quan Zhang, Fu-Huan Ming, Quan-Dong Zhu, Zhi-Dan Song, Xin Han, Ping Jiang
  Establishment and Identification of Cold-Stressed Normalized Full-Length cDNA Library of Ceratoides lanata.
  Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference. 2010;1-3 http://ieeexplore.ieee.org
• Nakamura S, Mano S, Tanaka Y, Ohnishi M, Nakamori C, Araki M, Niwa T, Nishimura M, Kaminaka H, Nakagawa T, Sato Y, Ishiguro S.
  Gateway binary vectors with the bialaphos resistance gene, bar, as a selection marker for plant transformation.
  Biosci Biotechnol Biochem. 2010;74(6):1315-9
  pmid: 20530878
• Tsoi S, Hulce D, Manion M, Liu J, Dixon W, Foxcroft G, Dyck M.
  Transcriptome Analysis of In Vitro- and In Vivo-Produced Preimplantation Porcine Embryos by 454 Pyrosequencing.
  Biology of Reproduction. 2010;83(1_MeetingAbstracts):110 ISI:000284381300252
• Yu JZ, Ma XL, Pan KH, Yang GP, Yu WG.
  Construction and characterization of a normalized cDNA library of Nannochloropsis oculata (Eustigmatophyceae).
  Chinese Journal of Oceanology and Limnology. 2010;28(4):802-7 ISI:000279294400013 http://www.springerlink.com

2009

• Mello LV, O'Meara H, Rigden DJ, Paterson S.
  Identification of novel aspartic proteases from Strongyloides ratti and characterisation of their evolutionary relationships, stage-specific expression and molecular structure.
  BMC Genomics. 2009 Dec 16;10:611 doi: 10.1186/1471-2164-10-611
  pmid: 20015380
• Waldeck W, Mueller G, Wiessler M, Brom M, Tóth K, Braun K.
  Autofluorescent proteins as photosensitizer in eukaryontes.
  Int J Med Sci. 2009 Dec 1;6(6):365-73
  pmid: 19960122
• Ai J, Wang Y, Dar JA, Liu J, Liu L, Nelson JB, Wang Z.
  HDAC6 Regulates Androgen Receptor Hypersensitivity and Nuclear Localization via Modulating Hsp90 Acetylation in Castration-Resistant Prostate Cancer.
  Mol Endocrinol. 2009 Dec;23(12):1963-1972 doi: 10.1210/me.2009-0188
  pmid: 19855091
• Ferguson HE, Kulkarni A, Lehmann GM, Garcia-Bates TM, Thatcher TH, Huxlin KR, Phipps RP, Sime PJ.
  Electrophilic peroxisome proliferator-activated receptor-gamma ligands have potent antifibrotic effects in human lung fibroblasts.
  Am J Respir Cell Mol Biol. 2009 Dec;41(6):722-30 doi: 10.1165/rcmb.2009-0006OC
  pmid: 19286977
• Simon S, Strauss S, von Haeseler A, Hadrys H.
  A phylogenomic approach to resolve the basal pterygote divergence.
  Mol Biol Evol. 2009 Dec;26(12):2719-30 doi: 10.1093/molbev/msp191
  pmid: 19713325
• Heeroma JH, Henneberger C, Rajakulendran S, Hanna MG, Schorge S, Kullmann DM.
  Episodic ataxia type 1 mutations differentially affect neuronal excitability and transmitter release.
  Dis Model Mech. 2009 Nov-Dec;2(11-12):612-9 doi: 10.1242/dmm.003582
  pmid: 19779067
• Costantini JL, Cheung SM, Hou S, Li H, Kung SK, Johnston JB, Wilkins JA, Gibson SB, Marshall AJ.
  TAPP2 links phosphoinositide 3-kinase signaling to B-cell adhesion through interaction with the cytoskeletal protein utrophin: expression of a novel cell adhesion-promoting complex in B-cell leukemia.
  Blood. 2009 Nov 19;114(21):4703-12 doi: 10.1182/blood-2009-03-213058
  pmid: 19786618
• Jabbour M, Campbell EM, Fares H, Lybarger L.
  Discrete domains of MARCH1 mediate its localization, functional interactions, and posttranscriptional control of expression.
  J Immunol. 2009 Nov 15;183(10):6500-12 doi: 10.4049/jimmunol.0901521
  pmid: 19880452
• Pletnev S, Gurskaya NG, Pletneva NV, Lukyanov KA, Chudakov DM, Martynov VI, Popov VO, Kovalchuk MV, Wlodawer A, Dauter Z, Pletnev V.
  Structural basis for phototoxicity of the genetically encoded photosensitizer KillerRed.
  J Biol Chem. 2009 Nov 13;284(46):32028-39 doi: 10.1074/jbc.M109.054973
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• Doebele RC, Schulze-Hoepfner FT, Hong J, Chlenski A, Zeitlin BD, Goel K, Gomes S, Liu Y, Abe MK, Nor JE, Lingen MW, Rosner MR.
  A novel interplay between Epac/Rap1 and mitogen-activated protein kinase kinase 5/extracellular signal-regulated kinase 5 (MEK5/ERK5) regulates thrombospondin to control angiogenesis.
  Blood. 2009 Nov 12;114(20):4592-600 doi: 10.1182/blood-2009-04-217042
  pmid: 19710505
• Birol I, Jackman SD, Nielsen C, Qian JQ, Varhol R, Stazyk G, Morin RD, Zhao Y, Hirst M, Schein JE, Horsman DE, Connors JM, Gascoyne RD, Marra MA, Jones SJ.
  De novo Transcriptome Assembly with ABySS.
  Bioinformatics. 2009 Nov 1;25(21):2872-7 doi: 10.1093/bioinformatics/btp367
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• Froscio SM, Cannon E, Lau HM, Humpage AR.
  Limited uptake of the cyanobacterial toxin cylindrospermopsin by Vero cells.
  Toxicon. 2009 Nov;54(6):862-8 doi: 10.1016/j.toxicon.2009.06.019
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• Ungvari Z, Labinskyy N, Mukhopadhyay P, Pinto JT, Bagi Z, Ballabh P, Zhang C, Pacher P, Csiszar A.
  Resveratrol attenuates mitochondrial oxidative stress in coronary arterial endothelial cells.
  Am J Physiol Heart Circ Physiol. 2009 Nov;297(5):H1876-81 doi: 10.1152/ajpheart.00375.2009
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• Wang J, Kondo N, Long Y, Iwamoto A, Matsuda Z.
  Monitoring of HIV-1 envelope-mediated membrane fusion using modified split green fluorescent proteins.
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• Ziera T, Irlbacher H, Fromm A, Latouche C, Krug SM, Fromm M, Jaisser F, Borden SA.
  Cnksr3 is a direct mineralocorticoid receptor target gene and plays a key role in the regulation of the epithelial sodium channel.
  FASEB J. 2009 Nov;23(11):3936-46 doi: 10.1096/fj.09-134759
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• Kijimoto T, Costello J, Tang Z, Moczek AP, Andrews J.
  EST and microarray analysis of horn development in Onthophagus beetles.
  BMC Genomics. 2009 Oct 30;10:504 doi: 10.1186/1471-2164-10-504
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• Schetelig MF, Scolari F, Handler AM, Kittelmann S, Gasperi G, Wimmer EA.
  Site-specific recombination for the modification of transgenic strains of the Mediterranean fruit fly Ceratitis capitata.
  Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18171-6 doi: 10.1073/pnas.0907264106
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• Yan D, Dong Xda E, Chen X, Wang L, Lu C, Wang J, Qu J, Tu L.
  MicroRNA-1/206 targets c-Met and inhibits rhabdomyosarcoma development.
  J Biol Chem. 2009 Oct 23;284(43):29596-604 doi: 10.1074/jbc.M109.020511
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• Liu X, Weaver D, Shirihai O, Hajnóczky G.
  Mitochondrial 'kiss-and-run': interplay between mitochondrial motility and fusion-fission dynamics.
  EMBO J. 2009 Oct 21;28(20):3074-89 doi: 10.1016/j.ab.2011.01.034
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• Arrenberg AB, Del Bene F, Baier H.
  Optical control of zebrafish behavior with halorhodopsin.
  Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17968-73 doi: 10.1073/pnas.0906252106
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• Mawe GM.
  Interstitial cells of Cajal in the gut: what makes them tick?
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• Tartar A, Wheeler MM, Zhou X, Coy MR, Boucias DG, Scharf ME.
  Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes.
  Biotechnol Biofuels. 2009 Oct 15;2:25 doi: 10.1186/1754-6834-2-25
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• Zhu MH, Kim TW, Ro S, Yan W, Ward SM, Koh SD, Sanders KM.
  A Ca(2+)-activated Cl(-) conductance in interstitial cells of Cajal linked to slow wave currents and pacemaker activity.
  J Physiol. 2009 Oct 15;587(Pt 20):4905-18 doi: 10.1113/jphysiol.2009.176206
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• Jin BY, Sartoretto JL, Gladyshev VN, Michel T.
  Endothelial nitric oxide synthase negatively regulates hydrogen peroxide-stimulated AMP-activated protein kinase in endothelial cells.
  Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17343-8 doi: 10.1073/pnas.0907409106
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• Chakraborty C, Hsu CH, Wen ZH, Lin CS.
  Recent Advances of Fluorescent Technologies for Drug Discovery and Development.
  Current Pharmaceutical Design. 2009 Oct;15(30):3552-70(19) http://www.ingentaconnect.com
• Flynn KC, Pak CW, Shaw AE, Bradke F, Bamburg JR.
  Growth cone-like waves transport actin and promote axonogenesis and neurite branching.
  Dev Neurobiol. 2009 Oct;69(12):761-79 doi: 10.1002/dneu.20734
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• Kulesa PM, Stark DA, Steen J, Lansford R, Kasemeier-Kulesa JC.
  Watching the assembly of an organ a single cell at a time using confocal multi-position photoactivation and multi-time acquisition.
  Organogenesis. 2009 Oct;5(4):238-47
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• Suo G, Jiang Y, Cowan B, Wang JY.
  Platelet-derived growth factor C is upregulated in human uterine fibroids and regulates uterine smooth muscle cell growth.
  Biol Reprod. 2009 Oct;81(4):749-58 doi: 10.1095/biolreprod.109.076869
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• Endo R, Saito T, Asada A, Kawahara H, Ohshima T, Hisanaga S.
  Commitment of 1-methyl-4-phenylpyrinidinium ion-induced neuronal cell death by proteasome-mediated degradation of p35 cyclin-dependent kinase 5 activator.
  J Biol Chem. 2009 Sep 18;284(38):26029-39 doi: 10.1074/jbc.M109.026443
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• Chu J, Zhang Z, Zheng Y, Yang J, Qin L, Lu J, Huang ZL, Zeng S, Luo Q.
  A novel far-red bimolecular fluorescence complementation system that allows for efficient visualization of protein interactions under physiological conditions.
  Biosens Bioelectron. 2009 Sep 15;25(1):234-9 doi: 10.1016/j.bios.2009.06.008
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• Wang Y, Hanifi-Moghaddam P, Hanekamp EE, Kloosterboer HJ, Franken P, Veldscholte J, van Doorn HC, Ewing PC, Kim JJ, Grootegoed JA, Burger CW, Fodde R, Blok LJ.
  Progesterone inhibition of Wnt/β-catenin signaling in normal endometrium and endometrial cancer.
  Clin Cancer Res. 2009 Sep 15;15(18):5784-93 doi: 10.1158/1078-0432.CCR-09-0814
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• Zou L, Zhou J, Zhang J, Li J, Liu N, Chai L, Li N, Liu T, Li L, Xie Z, Liu H, Wan Y, Wu Y.
  The GTPase Rab3b/3c-positive recycling vesicles are involved in cross-presentation in dendritic cells.
  Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15801-6 doi: 10.1073/pnas.0905684106
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• Marques MC, Alonso-Cantabrana H, Forment J, Arribas R, Alamar S, Conejero V, Perez-Amador MA.
  A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus.
  BMC Genomics. 2009 Sep 11;10:428 doi: 10.1186/1471-2164-10-428
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• Nowotschin S, Hadjantonakis AK.
  Use of KikGR a photoconvertible green-to-red fluorescent protein for cell labeling and lineage analysis in ES cells and mouse embryos.
  BMC Dev Biol. 2009 Sep 9;9:49 doi: 10.1186/1471-213X-9-49
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• Carpentier P, Violot S, Blanchoin L, Bourgeois D.
  Structural basis for the phototoxicity of the fluorescent protein KillerRed.
  FEBS Lett. 2009 Sep 3;583(17):2839-42 doi: 10.1016/j.febslet.2009.07.041
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• Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW.
  Whole genome amplification and de novo assembly of single bacterial cells.
  PLoS One. 2009 Sep 2;4(9):e6864 doi: 10.1371/journal.pone.0006864
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• Marshall TW, Aloor HL, Bear JE.
  Coronin 2A regulates a subset of focal-adhesion-turnover events through the cofilin pathway.
  J Cell Sci. 2009 Sep 1;122(Pt 17):3061-9 doi: 10.1242/jcs.051482
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• Gorbushin AM, Klimovich AV, Iakovleva NV.
  Himasthla elongata: effect of infection on expression of the LUSTR-like receptor mRNA in common periwinkle haemocytes.
  Exp Parasitol. 2009 Sep;123(1):24-30 doi: 10.1016/j.exppara.2009.05.004
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• Mamedov IZ, Britanova OV, Chkalina AV, Staroverov DB, Amosova AL, Mishin AS, Kurnikova MA, Zvyagin IV, Mutovina ZY, Gordeev AV, Khaidukov SV, Sharonov GV, Shagin DA, Chudakov DM, Lebedev YB.
  Individual characterization of stably expanded T cell clones in ankylosing spondylitis patients.
  Autoimmunity. 2009 Sep;42(6):525-36 doi: 10.1080/08916930902960362
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• Wang P, Chen Z, Meng ZQ, Fan J, Luo JM, Liang W, Lin JH, Zhou ZH, Chen H, Wang K, Shen YH, Xu ZD, Liu LM.
  Dual role of Ski in pancreatic cancer cells: tumor-promoting versus metastasis-suppressive function.
  Carcinogenesis. 2009 Sep;30(9):1497-506 doi: 10.1093/carcin/bgp154
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• Yip L, Su L, Sheng D, Chang P, Atkinson M, Czesak M, Albert PR, Collier AR, Turley SJ, Fathman CG, Creusot RJ.
  Deaf1 isoforms control the expression of genes encoding peripheral tissue antigens in the pancreatic lymph nodes during type 1 diabetes.
  Nat Immunol. 2009 Sep;10(9):1026-33 doi: 10.1038/ni.1773
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• Oser M, Yamaguchi H, Mader CC, Bravo-Cordero JJ, Arias M, Chen X, Desmarais V, van Rheenen J, Koleske AJ, Condeelis J.
  Cortactin regulates cofilin and N-WASp activities to control the stages of invadopodium assembly and maturation.
  J Cell Biol. 2009 Aug 24;186(4):571-87 doi: 10.1083/jcb.200812176
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• Naesby M, Nielsen SV, Nielsen CA, Green T, Tange TO, Simon E, Knechtle P, Hansson A, Schwab MS, Titiz O, Folly C, Archila RE, Maver M, van Sint Fiet S, Boussemghoune T, Janes M, Kumar AS, Sonkar SP, Mitra PP, Benjamin VA, Korrapati N, Suman I, Hansen EH, Thybo T, Goldsmith N, Sorensen AS.
  Yeast artificial chromosomes employed for random assembly of biosynthetic pathways and production of diverse compounds in Saccharomyces cerevisiae.
  Microb Cell Fact. 2009 Aug 13;8:45 doi: 10.1186/1475-2859-8-45
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• Zhao Y, Sfeir AJ, Zou Y, Buseman CM, Chow TT, Shay JW, Wright WE.
  Telomere extension occurs at most chromosome ends and is uncoupled from fill-in in human cancer cells.
  Cell. 2009 Aug 7;138(3):463-75 doi: 10.1016/j.cell.2009.05.026
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• Wall PK, Leebens-Mack J, Chanderbali AS, Barakat A, Wolcott E, Liang H, Landherr L, Tomsho LP, Hu Y, Carlson JE, Ma H, Schuster SC, Soltis DE, Soltis PS, Altman N, dePamphilis CW.
  Comparison of next generation sequencing technologies for transcriptome characterization.
  BMC Genomics. 2009 Aug 1;10:347 doi: 10.1186/1471-2164-10-347
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• Gao Q, Nie P, Thompson KD, Adams A, Wang T, Secombes CJ, Zou J.
  The search for the IFN-gamma receptor in fish: Functional and expression analysis of putative binding and signalling chains in rainbow trout Oncorhynchus mykiss.
  Dev Comp Immunol. 2009 Aug;33(8):920-31 doi: 10.1016/j.dci.2009.03.001
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• Nikapitiya C, De Zoysa M, Whang I, Kim CG, Lee YH, Kim SJ, Lee J.
  Molecular cloning, characterization and expression analysis of peroxiredoxin 6 from disk abalone Haliotis discus discus and the antioxidant activity of its recombinant protein.
  Fish Shellfish Immunol. 2009 Aug;27(2):239-49 doi: 10.1016/j.fsi.2009.05.002
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• Sun Z, Juriani A, Meininger GA, Meissner KE.
  Probing cell surface interactions using atomic force microscope cantilevers functionalized for quantum dot-enabled Forster resonance energy transfer.
  J Biomed Opt. 2009 Jul-Aug;14(4):040502 doi: 10.1117/1.3174429
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• Fleury E, Huvet A, Lelong C, de Lorgeril J, Boulo V, Gueguen Y, Bachere E, Tanguy A, Moraga D, Fabioux C, Lindeque P, Shaw J, Reinhardt R, Prunet P, Davey G, Lapegue S, Sauvage C, Corporeau C, Moal J, Gavory F, Wincker P, Moreews F, Klopp C, Mathieu M, Boudry P, Favrel P.
  Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase.
  BMC Genomics. 2009 Jul 29;10:341 doi: 10.1186/1471-2164-10-341
  pmid: 19640306
• Wang X, Su B, Lee HG, Li X, Perry G, Smith MA, Zhu X.
  Impaired balance of mitochondrial fission and fusion in Alzheimer's disease.
  J Neurosci. 2009 Jul 15;29(28):9090-103 doi: 10.1523/JNEUROSCI.1357-09.2009
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• Yamauchi J, Miyamoto Y, Torii T, Mizutani R, Nakamura K, Sanbe A, Koide H, Kusakawa S, Tanoue A.
  Valproic acid-inducible Arl4D and cytohesin-2/ARNO, acting through the downstream Arf6, regulate neurite outgrowth in N1E-115 cells.
  Exp Cell Res. 2009 Jul 15;315(12):2043-52 doi: 10.1016/j.yexcr.2009.03.012
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• Zakharova MY, Kuznetsov NA, Dubiley SA, Kozyr AV, Fedorova OS, Chudakov DM, Knorre DG, Shemyakin IG, Gabibov AG, Kolesnikov AV.
  Substrate recognition of anthrax lethal factor examined by combinatorial and pre-steady-state kinetic approaches.
  J Biol Chem. 2009 Jul 3;284(27):17902-13 doi: 10.1074/jbc.M807510200
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• Hynes J, O'Riordan TC, Zhdanov AV, Uray G, Will Y, Papkovsky DB.
  In vitro analysis of cell metabolism using a long-decay pH-sensitive lanthanide probe and extracellular acidification assay.
  Anal Biochem. 2009 Jul 1;390(1):21-8 doi: 10.1016/j.ab.2009.04.016
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• Falk MM, Baker SM, Gumpert AM, Segretain D, Buckheit RW 3rd.
  Gap junction turnover is achieved by the internalization of small endocytic double-membrane vesicles.
  Mol Biol Cell. 2009 Jul;20(14):3342-52 doi: 10.1091/mbc.E09-04-0288
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• Martin K, Kopperud K, Chakrabarty R, Banerjee R, Brooks R, Goodin MM.
  Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta.
  Plant J. 2009 Jul;59(1):150-62 doi: 10.1111/j.1365-313X.2009.03850.x
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• Jagasia R, Steib K, Englberger E, Herold S, Faus-Kessler T, Saxe M, Gage FH, Song H, Lie DC.
  GABA-cAMP response element-binding protein signaling regulates maturation and survival of newly generated neurons in the adult hippocampus.
  J Neurosci. 2009 Jun 24;29(25):7966-77 doi: 10.1523/JNEUROSCI.1054-09.2009
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• Korte M.
  Neuroscience. Bridging the gap and staying local.
  Science. 2009 Jun 19;324(5934):1527-8. doi: 10.1126/science.1176484
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• Wang DO, Kim SM, Zhao Y, Hwang H, Miura SK, Sossin WS, Martin KC.
  Synapse- and stimulus-specific local translation during long-term neuronal plasticity.
  Science. 2009 Jun 19;324(5934):1536-40 doi: 10.1126/science.1173205
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• Jiang Q, Feng MG, Mo YY.
  Systematic validation of predicted microRNAs for cyclin D1.
  BMC Cancer. 2009 Jun 18;9:194 doi: 10.1186/1471-2407-9-194
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• Niethammer P, Grabher C, Look AT, Mitchison TJ.
  A tissue-scale gradient of hydrogen peroxide mediates rapid wound detection in zebrafish.
  Nature. 2009 Jun 18;459(7249):996-9 doi: 10.1038/nature08119
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• Dong B, Horie T, Denker E, Kusakabe T, Tsuda M, Smith WC, Jiang D.
  Tube formation by complex cellular processes in Ciona intestinalis notochord.
  Dev Biol. 2009 Jun 15;330(2):237-49 doi: 10.1016/j.ydbio.2009.03.015
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• Zhou B, Dong Q, Ma R, Chen Y, Yang J, Sun LZ, Huang C.
  Rapid isolation of highly pure single-stranded DNA from phagemids.
  Anal Biochem. 2009 Jun 15;389(2):177-9 doi: 10.1016/j.ab.2009.03.044
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• Oswald C, Krause-Buchholz U, Rodel G.
  Knockdown of human COX17 affects assembly and supramolecular organization of cytochrome c oxidase.
  J Mol Biol. 2009 Jun 12;389(3):470-9 doi: 10.1016/j.jmb.2009.04.034
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• Tang S, Okashah RA, Cordonnier-Pratt MM, Pratt LH, Ed Johnson V, Taylor CA, Arnold ML, Knapp SJ.
  EST and EST-SSR marker resources for Iris.
  BMC Plant Biol. 2009 Jun 10;9:72 doi: 10.1186/1471-2229-9-72
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• Adam V, Nienhaus K, Bourgeois D, Nienhaus GU.
  Structural basis of enhanced photoconversion yield in green fluorescent protein-like protein Dendra2.
  Biochemistry. 2009 Jun 9;48(22):4905-15 doi: 10.1021/bi900383a
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• Anderson DD, Stover PJ.
  SHMT1 and SHMT2 are functionally redundant in nuclear De novo thymidylate biosynthesis.
  PLoS One. 2009 Jun 9;4(6):e5839 doi: 10.1371/journal.pone.0005839
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• Bohnacker T, Marone R, Collmann E, Calvez R, Hirsch E, Wymann MP.
  PI3Kgamma adaptor subunits define coupling to degranulation and cell motility by distinct PtdIns(3,4,5)P3 pools in mast cells.
  Sci Signal. 2009 Jun 9;2(74):ra27 doi: 10.1126/scisignal.2000259
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• Kural C, Nonet ML, Selvin PR.
  FIONA on Caenorhabditis elegans.
  Biochemistry. 2009 Jun 9;48(22):4663-5 doi: 10.1021/bi8023477
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• Serebrovskaya EO, Edelweiss EF, Stremovskiy OA, Lukyanov KA, Chudakov DM, Deyev SM.
  Targeting cancer cells by using an antireceptor antibody-photosensitizer fusion protein.
  Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9221-5 doi: 10.1073/pnas.0904140106
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• Gligorijevic B, Kedrin D, Segall JE, Condeelis J, van Rheenen J.
  Dendra2 photoswitching through the Mammary Imaging Window.
  J Vis Exp. 2009 Jun 5;(28) doi: 10.3791/1278
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• Gogvadze E, Stukacheva E, Buzdin A, Sverdlov E.
  Human-specific modulation of transcriptional activity provided by endogenous retroviral insertions.
  J Virol. 2009 Jun;83(12):6098-105 doi: 10.1128/JVI.00123-09
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• Huisken J, Stainier DY.
  Selective plane illumination microscopy techniques in developmental biology.
  Development. 2009 Jun;136(12):1963-75 doi: 10.1242/dev.022426
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• Sharbel TF, Voigt ML, Corral JM, Thiel T, Varshney A, Kumlehn J, Vogel H, Rotter B.
  Molecular signatures of apomictic and sexual ovules in the Boechera holboellii complex.
  Plant J. 2009 Jun;58(5):870-82 doi: 10.1111/j.1365-313X.2009.03826.x
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• Suto K, Masuda H, Takenaka Y, Tsuji FI, Mizuno H.
  Structural basis for red-shifted emission of a GFP-like protein from the marine copepod Chiridius poppei.
  Genes Cells. 2009 Jun;14(6):727-37 doi: 10.1111/j.1365-2443.2009.01305.x
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• Tachibana A, Tohiguchi K, Ueno T, Setogawa Y, Harada A, Tanabe T.
  Preparation of long sticky ends for universal ligation-independent cloning: sequential T4 DNA polymerase treatments.
  J Biosci Bioeng. 2009 Jun;107(6):668-9 doi: 10.1016/j.jbiosc.2009.01.019
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• Vander Heyden AB, Naismith TV, Snapp EL, Hodzic D, Hanson PI.
  LULL1 retargets TorsinA to the nuclear envelope revealing an activity that is impaired by the DYT1 dystonia mutation.
  Mol Biol Cell. 2009 Jun;20(11):2661-72 doi: 10.1091/mbc.E09-01-0094
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• Pauchet Y, Wilkinson P, van Munster M, Augustin S, Pauron D, ffrench-Constant RH.
  Pyrosequencing of the midgut transcriptome of the poplar leaf beetle Chrysomela tremulae reveals new gene families in Coleoptera.
  Insect Biochem Mol Biol. 2009 May-Jun;39(5-6):403-13 doi: 10.1016/j.ibmb.2009.04.001
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• Sun W, Li Y, Chen L, Chen H, You F, Zhou X, Zhou Y, Zhai Z, Chen D, Jiang Z.
  ERIS, an endoplasmic reticulum IFN stimulator, activates innate immune signaling through dimerization.
  Proc Natl Acad Sci U S A. 2009 May 26;106(21):8653-8 doi: 10.1073/pnas.0900850106
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• Lamm N, Ordan E, Shponkin R, Richler C, Aker M, Tzfati Y.
  Diminished telomeric 3' overhangs are associated with telomere dysfunction in Hoyeraal-Hreidarsson syndrome.
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• Bulankina AV, Deggerich A, Wenzel D, Mutenda K, Wittmann JG, Rudolph MG, Burger KN, Honing S.
  TIP47 functions in the biogenesis of lipid droplets.
  J Cell Biol. 2009 May 18;185(4):641-55 doi: 10.1083/jcb.200812042
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• Kobrinsky E, Abrahimi P, Duong SQ, Thomas S, Harry JB, Patel C, Lao QZ, Soldatov NM.
  Effect of Ca(v)beta subunits on structural organization of Ca(v)1.2 calcium channels.
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• Meyer E, Aglyamova GV, Wang S, Buchanan-Carter J, Abrego D, Colbourne JK, Willis BL, Matz MV.
  Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx.
  BMC Genomics. 2009 May 12;10:219 doi: 10.1186/1471-2164-10-219
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• Schmitz R, Hansmann ML, Bohle V, Martin-Subero JI, Hartmann S, Mechtersheimer G, Klapper W, Vater I, Giefing M, Gesk S, Stanelle J, Siebert R, Kuppers R.
  TNFAIP3 (A20) is a tumor suppressor gene in Hodgkin lymphoma and primary mediastinal B cell lymphoma.
  J Exp Med. 2009 May 11;206(5):981-9 doi: 10.1084/jem.20090528
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• Shu X, Royant A, Lin MZ, Aguilera TA, Lev-Ram V, Steinbach PA, Tsien RY.
  Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome.
  Science. 2009 May 8;324(5928):804-7 doi: 10.1126/science.1168683
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• Sugino H, Ozaki K, Shirasaki Y, Arakawa T, Shoji S, Funatsu T.
  On-chip microfluidic sorting with fluorescence spectrum detection and multiway separation.
  Lab Chip. 2009 May 7;9(9):1254-60 doi: 10.1039/b815765k
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• Makio T, Stanton LH, Lin CC, Goldfarb DS, Weis K, Wozniak RW.
  The nucleoporins Nup170p and Nup157p are essential for nuclear pore complex assembly.
  J Cell Biol. 2009 May 4;185(3):459-73. doi: 10.1083/jcb.200810029
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• Onischenko E, Stanton LH, Madrid AS, Kieselbach T, Weis K.
  Role of the Ndc1 interaction network in yeast nuclear pore complex assembly and maintenance.
  J Cell Biol. 2009 May 4;185(3):475-91 doi: 10.1083/jcb.200810030
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• Rexach M.
  Piecing together nuclear pore complex assembly during interphase.
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• Vanlandingham PA, Ceresa BP.
  Rab7 regulates late endocytic trafficking downstream of multivesicular body biogenesis and cargo sequestration.
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• Walker JC, Harland RM.
  microRNA-24a is required to repress apoptosis in the developing neural retina.
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• Boronnikova SV.
  Genetic variation in Ural populations of the rare plant species Adenophora lilifolia (L.) DC. on the basis of analysis of polymorphism of ISSR markers.
  Genetika. 2009 May;45(5):652-5 http://www.springerlink.com
  pmid: 19534424
• Nowotschin S, Eakin GS, Hadjantonakis AK.
  Live-imaging fluorescent proteins in mouse embryos: multi-dimensional, multi-spectral perspectives.
  Trends Biotechnol. 2009 May;27(5):266-76 doi: 10.1016/j.tibtech.2009.02.006
  pmid: 19339068
• Samarkina ON, Popova AG, Gvozdik EY, Chkalina AV, Zvyagin IV, Rylova YV, Rudenko NV, Lusta KA, Kelmanson IV, Gorokhovatsky AY, Vinokurov LM.
  Universal and rapid method for purification of GFP-like proteins by the ethanol extraction.
  Protein Expr Purif. 2009 May;65(1):108-13 doi: 10.1016/j.pep.2008.11.008
  pmid: 19084068
• Bai X, Adams BJ, Ciche TA, Clifton S, Gaugler R, Hogenhout SA, Spieth J, Sternberg PW, Wilson RK, Grewal PS.
  Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1.
  BMC Genomics. 2009 Apr 30;10:205 doi: 10.1186/1471-2164-10-205
  pmid: 19405965
• Hollis ER 2nd, Jamshidi P, Low K, Blesch A, Tuszynski MH.
  Induction of corticospinal regeneration by lentiviral trkB-induced Erk activation.
  Proc Natl Acad Sci U S A. 2009 Apr 28;106(17):7215-20 doi: 10.1073/pnas.0810624106
  pmid: 19359495
• Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G.
  A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.
  BMC Genomics. 2009 Apr 20;10:163 doi: 10.1186/1471-2164-10-163
  pmid: 19379481
• Hojman P, Eriksen J, Gehl J.
  In Vivo Imaging of Far-red Fluorescent Proteins after DNA Electrotransfer to Muscle Tissue.
  Biol Proced Online. 2009 Apr 10;11:253-62 doi: 10.1007/s12575-009-9005-0
  pmid: 19495913
• Cai CQ, Doyon Y, Ainley WM, Miller JC, Dekelver RC, Moehle EA, Rock JM, Lee YL, Garrison R, Schulenberg L, Blue R, Worden A, Baker L, Faraji F, Zhang L, Holmes MC, Rebar EJ, Collingwood TN, Rubin-Wilson B, Gregory PD, Urnov FD, Petolino JF.
  Targeted transgene integration in plant cells using designed zinc finger nucleases.
  Plant Mol Biol. 2009 Apr;69(6):699-709 doi: 10.1007/s11103-008-9449-7
  pmid: 19112554
• Nekrasov AN, Petrovskaya LE, Toporova VA, Kryukova EA, Rodina AV, Moskaleva EY, Kirpichnikov MP.
  Design of a novel interleukin-13 antagonist from analysis of informational structure.
  Biochemistry (Mosc). 2009 Apr;74(4):399-405 http://www.springerlink.com
  pmid: 19463093
• Raymond JA, Janech MG.
  Ice-binding proteins from enoki and shiitake mushrooms.
  Cryobiology. 2009 Apr;58(2):151-6 doi: 10.1016/j.cryobiol.2008.11.009
  pmid: 19121299
• Treiber N, Peters T, Sindrilaru A, Huber R, Kohn M, Menke A, Briviba K, Kreppel F, Basu A, Maity P, Koller M, Iben S, Wlaschek M, Kochanek S, Scharffetter-Kochanek K.
  Overexpression of manganese superoxide dismutase in human dermal fibroblasts enhances the contraction of free floating collagen lattice: implications for ageing and hyperplastic scar formation.
  Arch Dermatol Res. 2009 Apr;301(4):273-87 doi: 10.1007/s00403-009-0935-9
  pmid: 19306099
• Whetten RW, Sofia VA, Frampton J.
  Polymerase chain reaction preparation of template for massively parallel pyrosequencing.
  J Biomol Tech. 2009 Apr;20(2):128-34
  pmid: 19503624
• Danilevich VN, Barinova ES, Grishin EV.
  Microparticles from coupled DNA formed in the process of polymerase chain reaction.
  Bioorg Khim. 2009 Mar-Apr;35(2):226-38 http://www.springerlink.com
  pmid: 19537174
• Shcherbo D, Souslova EA, Goedhart J, Chepurnykh TV, Gaintzeva A, Shemiakina II, Gadella TW, Lukyanov S, Chudakov DM.
  Practical and reliable FRET/FLIM pair of fluorescent proteins.
  BMC Biotechnol. 2009 Mar 25;9:24 doi: 10.1186/1472-6750-9-24
  pmid: 19321010
• Yue GH, Zhu ZY, Wang CM, Xia JH.
  A simple and efficient method for isolating polymorphic microsatellites from cDNA.
  BMC Genomics. 2009 Mar 25;10:125 doi: 10.1186/1471-2164-10-125
  pmid: 19320968
• Saleh A, Shan L, Halayko AJ, Kung S, Gounni AS.
  Critical role for STAT3 in IL-17A-mediated CCL11 expression in human airway smooth muscle cells.
  J Immunol. 2009 Mar 15;182(6):3357-65 doi: 10.4049/jimmunol.0801882
  pmid: 19265112
• Shcherbo D, Murphy CS, Ermakova GV, Solovieva EA, Chepurnykh TV, Shcheglov AS, Verkhusha VV, Pletnev VZ, Hazelwood KL, Roche PM, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM.
  Far-red fluorescent tags for protein imaging in living tissues.
  Biochem J. 2009 Mar 15;418(3):567-74 doi: 10.1042/BJ20081949
  pmid: 19143658
• Denekamp NY, Thorne MA, Clark MS, Kube M, Reinhardt R, Lubzens E.
  Discovering genes associated with dormancy in the monogonont rotifer Brachionus plicatilis.
  BMC Genomics. 2009 Mar 13;10:108 doi: 10.1186/1471-2164-10-108
  pmid: 19284654
• Blow N.
  Transcriptomics: The digital generation.
  Nature. 2009 Mar 12;458(7235):239-42 doi: 10.1038/458239a
  pmid: 19279641
• al-Haj L, Al-Ahmadi W, Al-Saif M, Demirkaya O, Khabar KS.
  Cloning-free regulated monitoring of reporter and gene expression.
  BMC Mol Biol. 2009 Mar 8;10:20 doi: 10.1186/1471-2199-10-20
  pmid: 19267938
• Weisova P, Concannon CG, Devocelle M, Prehn JH, Ward MW.
  Regulation of glucose transporter 3 surface expression by the AMP-activated protein kinase mediates tolerance to glutamate excitation in neurons.
  J Neurosci. 2009 Mar 4;29(9):2997-3008 doi: 10.1523/JNEUROSCI.0354-09.2009
  pmid: 19261894
• Sachdeva M, Zhu S, Wu F, Wu H, Walia V, Kumar S, Elble R, Watabe K, Mo YY.
  p53 represses c-Myc through induction of the tumor suppressor miR-145.
  Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3207-12 doi: 10.1073/pnas.0808042106
  pmid: 19202062
• Wu F, Zhu S, Ding Y, Beck WT, Mo YY.
  MicroRNA-mediated regulation of Ubc9 expression in cancer cells.
  Clin Cancer Res. 2009 Mar 1;15(5):1550-7 doi: 10.1158/1078-0432.CCR-08-0820
  pmid: 19223510
• Bogdanova EA, Shagina IA, Mudrik E, Ivanov I, Amon P, Vagner LL, Lukyanov SA, Shagin DA.
  DSN depletion is a simple method to remove selected transcripts from cDNA populations.
  Mol Biotechnol. 2009 Mar;41((3)):247-53 doi: 10.1007/s12033-008-9131-y
  pmid: 19127453
• Nikapitiya C, Oh C, Whang I, Kim CG, Lee YH, Kim SJ, Lee J.
  Molecular characterization, gene expression analysis and biochemical properties of α-amylase from the disk abalone, Haliotis discus discus.
  Comp Biochem Physiol B Biochem Mol Biol. 2009 Mar;152(3):271-81 doi: 10.1016/j.cbpb.2008.12.007
  pmid: 19135166
• Shibata T, Tanaka T, Shimizu K, Hayakawa S, Kuroda K.
  Immunofluorescence imaging of the influenza virus M1 protein is dependent on the fixation method.
  J Virol Methods. 2009 Mar;156(1-2):162-5 doi: 10.1016/j.jviromet.2008.10.020
  pmid: 19027795
• Zhang Z, Zeng B, Zhang Z, Jiao G, Li H, Jing Z, Ouyang J, Yuan X, Chai L, Che Y, Zhang Y, Yang R.
  Suppressor of cytokine signaling 3 promotes bone marrow cells to differentiate into CD8+ T lymphocytes in lung tissue via up-regulating Notch1 expression.
  Cancer Res. 2009 Feb 15;69(4):1578-86 doi: 10.1158/0008-5472.CAN-08-2744
  pmid: 19190337
• Zhao Q, Caballero OL, Levy S, Stevenson BJ, Iseli C, de Souza SJ, Galante PA, Busam D, Leversha MA, Chadalavada K, Rogers YH, Venter JC, Simpson AJ, Strausberg RL.
  Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line.
  Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1886-91 doi: 10.1073/pnas.0812945106
  pmid: 19181860
• Shah SN, Eckert KA.
  Human postmeiotic segregation 2 exhibits biased repair at tetranucleotide microsatellite sequences.
  Cancer Res. 2009 Feb 1;69(3):1143-9 doi: 10.1158/0008-5472.CAN-08-3499
  pmid: 19155293
• Antony B, Fujii T, Moto K, Matsumoto S, Fukuzawa M, Nakano R, Tatsuki S, Ishikawa Y.
  Pheromone-gland-specific fatty-acyl reductase in the adzuki bean borer, Ostrinia scapulalis (Lepidoptera: Crambidae).
  Insect Biochem Mol Biol. 2009 Feb;39(2):90-5 doi: 10.1016/j.ibmb.2008.10.008
  pmid: 19041942
• Chi YH, Salzman RA, Balfe S, Ahn JE, Sun W, Moon J, Yun DJ, Lee SY, Higgins TJ, Pittendrigh B, Murdock LL, Zhu-Salzman K.
  Cowpea bruchid midgut transcriptome response to a soybean cystatin--costs and benefits of counter-defence.
  Insect Mol Biol. 2009 Feb;18(1):97-110 doi: 10.1111/j.1365-2583.2008.00854.x
  pmid: 19196350
• Cvackova Z, Masata M, Stanek D, Fidlerova H, Raska I.
  Chromatin position in human HepG2 cells: although being non-random, significantly changed in daughter cells.
  J Struct Biol. 2009 Feb;165(2):107-17 doi: 10.1016/j.jsb.2008.10.007
  pmid: 19056497
• Furnes C, Seppola M, Robertsen B.
  Molecular characterisation and expression analysis of interferon gamma in Atlantic cod (Gadus morhua).
  Fish Shellfish Immunol. 2009 Feb;26(2):285-92 doi: 10.1016/j.fsi.2008.12.002
  pmid: 19100838
• He M, Xia Y.
  Construction and analysis of a normalized cDNA library from Metarhizium anisopliae var. acridum germinating and differentiating on Locusta migratoria wings.
  FEMS Microbiol Lett. 2009 Feb;291(1):127-35 doi: 10.1111/j.1574-6968.2008.01447.x
  pmid: 19076228
• Patot S, Lepetit D, Charif D, Varaldi J, Fleury F.
  Molecular detection, penetrance, and transmission of an inherited virus responsible for behavioral manipulation of an insect parasitoid.
  Appl Environ Microbiol. 2009 Feb;75(3):703-10 doi: 10.1128/AEM.01778-08
  pmid: 19060167
• Borovikova EA, Makhrov AA.
  Detection of the mitochondrial DNA haplotype characteristic of the least cisco (Coregonus sardinella, Valenciennes, 1848) in the vendace (C. albula, Linnaeus, 1758) population of Vodlozero (the Baltic Sea basin).
  Izv Akad Nauk Ser Biol. 2009 Jan-Feb;(1):95-9 http://www.springerlink.com
  pmid: 19239118
• Drobizhev M, Tillo S, Makarov NS, Hughes TE, Rebane A.
  Absolute two-photon absorption spectra and two-photon brightness of orange and red fluorescent proteins.
  J Phys Chem B. 2009 Jan 29;113(4):855-9 doi: 10.1021/jp8087379
  pmid: 19127988
• Espinosa A, Garcia A, Hartel S, Hidalgo C, Jaimovich E.
  NADPH oxidase and hydrogen peroxide mediate insulin-induced calcium increase in skeletal muscle cells.
  J Biol Chem. 2009 Jan 23;284(4):2568-75 doi: 10.1074/jbc.M804249200
  pmid: 19028699
• Pauchet Y, Freitak D, Heidel-Fischer HM, Heckel DG, Vogel H.
  Immunity or digestion: glucanase activity in a glucan-binding protein family from Lepidoptera.
  J Biol Chem. 2009 Jan 23;284(4):2214-24 doi: 10.1074/jbc.M806204200
  pmid: 19033442
• Kawashima T, Okuno H, Nonaka M, Adachi-Morishima A, Kyo N, Okamura M, Takemoto-Kimura S, Worley PF, Bito H.
  Synaptic activity-responsive element in the Arc/Arg3.1 promoter essential for synapse-to-nucleus signaling in activated neurons.
  Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):316-21 doi: 10.1073/pnas.0806518106
  pmid: 19116276
• Elliott AM, Al-Hajj MA.
  ABCB8 mediates doxorubicin resistance in melanoma cells by protecting the mitochondrial genome.
  Mol Cancer Res. 2009 Jan;7(1):79-87 doi: 10.1158/1541-7786.MCR-08-0235
  pmid: 19147539
• Tsutsumi R, Fukata Y, Noritake J, Iwanaga T, Perez F, Fukata M.
  Identification of G protein alpha subunit-palmitoylating enzyme.
  Mol Cell Biol. 2009 Jan;29(2):435-47 doi: 10.1128/MCB.01144-08
  pmid: 19001095
• Adler EM.
  Getting to the Scene.
  Sci Signal. 2009;2(76):ec209 http://stke.sciencemag.org
• Amsen EM, Rotin D.
  Technical Note: The Use of RNA-interference as a Tool to Find Proteins Involved in Melanosome Formation or Transport.
  Mol Cell Biol. 2009; http://precedings.nature.com
• Barker MS, Vogel H, Schranz ME.
  Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales.
  Gen Biol Evol. 2009;2009:391-9 doi: 10.1093/gbe/evp040
  pmid: 20333207
• Baxter SW, McMillan O, Chamberlain N, Hoffrench R, Jiggens CD.
  Prospects for Locating Adaptive Genes in Lepidopteran Genomes: A Case Study of Butterfly Color Patterns.
  In: Molecular Biology and Genetics of the Lepidoptera. Marian R. Goldsmith, Frantisek Marec (eds). ISBN: 978-1-4200-6014-0. 2009; http://books.google.com
• Beliakov IS, Karakasheva TA, Mazurenko NN.
  Exon-intron structure of the LY6G6D gene.
  Mol Biol (Mosk). 2009;43(4):590-8 http://www.springerlink.com
• Clifton SW, Mitreva M.
  Strategies for undertaking expressed sequence tag (EST) projects.
  Methods Mol Biol. 2009;533:13-32 doi: 10.1007/978-1-60327-136-3_2
  pmid: 19277564
• Fox S, Filichkin S, Mockler TC.
  Applications of Ultra-high-Throughput Sequencing.
  Methods Mol Biol. 2009;553:79-108 doi: 10.1007/978-1-60327-563-7_5
  pmid: 19588102
• Gautam SG, Perron A, Mutoh H, Knopfel T.
  Exploration of fluorescent protein voltage probes based on circularly permuted fluorescent proteins.
  Front Neuroengineering. 2009;2:14 doi: 10.3389/neuro.16.014.2009
  pmid: 19862342
• Goedhart J, Gadella TWJ Jr
  Fluorescence resonance energy transfer imaging of PKC signalling in living cells using genetically encoded fluorescent probes.
  J R Soc Interface. 2009;6(Suppl_1):S27-34 www.ncbi.nlm.nih.gov
• Guo F, Souslova E, Chudakov D, Paton JFR, Kasparov S.
  Cellular substrates for angiotensin1-7 (Ang1-7) action in the rostral ventro-lateral medulla (RVLM) of the normotentsive and spontaneously hypertensive rat (SHR).
  FASEB J. 2009; 23(1_MeetingAbstracts):958.3
• Hess ST, Gould TJ, Gunewardene M, Bewersdorf J, Mason MD.
  Ultrahigh resolution imaging of biomolecules by fluorescence photoactivation localization microscopy.
  Methods Mol Biol. 2009;544:483-522 doi: 10.1007/978-1-59745-483-4_32
  pmid: 19488720
• Jouzani GS, Goldenkova IV, Piruzian ES.
  Expression of hybrid cry3aM–licBM2 genes in transgenic potatoes (Solanum tuberosum).
  Plant Cell Tissue Organ Cult. 2009;92(3):321-5 http://www.springerlink.com
• Jubelin G, Chavez CV, Taieb F, Banfield MJ, Samba-Louaka A, Nobe R, Nougayrede JP, Zumbihl R, Givaudan A, Escoubas JM, Oswald E.
  Cycle inhibiting factors (CIFs) are a growing family of functional cyclomodulins present in invertebrate and mammal bacterial pathogens.
  PLoS One. 2009;4(3):e4855 doi: 10.1371/journal.pone.0004855
  pmid: 19308257
• Khodosevich K, Seeburg PH, Monyer H.
  Major signaling pathways in migrating neuroblasts.
  Front Mol Neurosci. 2009;2:7 doi: 10.3389/neuro.02.007.2009
  pmid: 19668709
• Kimura A, Ikeo K, Nonaka M.
  Evolutionary origin of the vertebrate blood complement and coagulation systems inferred from liver EST analysis of lamprey.
  Dev Comp Immunol. 2009;33(1):77-87 doi: 10.1016/j.dci.2008.07.005
  pmid: 18760304
• Kimura A.
  Evolution of the complement components with unique domain structure.
  Doctoral Thesis. 2009; http://repository.dl.itc.u-tokyo.ac.jp
• Kuespert K, Hauck CR.
  Characterizing host receptor recognition by individual bacterial pathogens.
  Methods Mol Biol. 2009;470:57-65 doi: 10.1007/978-1-59745-204-5_5
  pmid: 19089375
• Mukai M, Honda A.
  Analysis of promoter binding proteins of Ebp1 that is inhibitor protein of influenza virus RNA polymerase
  Micro-NanoMechatronics and Human Science, 2009. MHS 2009. International Symposium. 2009;271-4 http://ieeexplore.ieee.org
• Myers D, Terada L.
  Visualization of Reactive Oxygen Species Production at Focal Adhesions.
  Am J Respir Crit Care Med. 2009; 179(1_MeetingAbstracts):A4166
• Nakagawa T, Ishiguro S, Kimura T.
  Gateway vectors for plant transformation.
  Plant Biotechnology. 2009;26:275-84 http://www.wdc-jp.biz
• Prescott M.
  Genetically Encoded Fluorescent Probes: Some Properties and Applications in Life Sciences.
  In: Fluorescence Applications in Biotechnology and Life Sciences. By Ewa M. Goldys. ISBN: 978-0-470-08370-3. 2009; http://books.google.com
• Raymond JA, Janech MG, Fritsen CH.
  NOVEL ICE-BINDING PROTEINS FROM A PSYCHROPHILIC ANTARCTIC ALGA (CHLAMYDOMONADACEAE, CHLOROPHYCEAE)
  Journal of Phycology. 2009; 45(1):130-6 http://www3.interscience.wiley.com
• SK Pierce, NE Curtis, JA Schwartz.
  Chlorophyll a synthesis by an animal using transferred algal nuclear genes.
  Symbiosis. 2009;49(3):121-31 http://www.springerlink.com

2008

• Hazelwood LA, Free RB, Cabrera DM, Skinbjerg M, Sibley DR.
  Reciprocal modulation of function between the D1 and D2 dopamine receptors and the Na+,K+-ATPase.
  J Biol Chem. 2008 Dec 26;283(52):36441-53 doi: 10.1074/jbc.M805520200
  pmid: 18984584
• Wang X, Su B, Siedlak SL, Moreira PI, Fujioka H, Wang Y, Casadesus G, Zhu X.
  Amyloid-beta overproduction causes abnormal mitochondrial dynamics via differential modulation of mitochondrial fission/fusion proteins.
  Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19318-23 doi: 10.1073/pnas.0804871105
  pmid: 19050078
• Gould TJ, Gunewardene MS, Gudheti MV, Verkhusha VV, Yin SR, Gosse JA, Hess ST.
  Nanoscale imaging of molecular positions and anisotropies.
  Nat Methods. 2008 Dec;5(12):1027-30 doi: 10.1038/nmeth.1271
  pmid: 19011626
• Ikeda T, Ohsugi T, Kimura T, Matsushita S, Maeda Y, Harada S, Koito A.
  The antiretroviral potency of APOBEC1 deaminase from small animal species.
  Nucleic Acids Res. 2008 Dec;36(21):6859-71 doi: 10.1093/nar/gkn802
  pmid: 18971252
• Baranova LA, Emel'ianova VP, Zhornik EV, Minov AM, Naumenko LV, Volotovskii ID.
  Cloning and analysis of coding cDNA sequence of human lymphocyte Csk tyrosine kinase under normal conditions and in choroidal melanoma.
  Izv Akad Nauk Ser Biol. 2008 Nov-Dec;(6):663-70 http://www.springerlink.com
  pmid: 19198071
• Yazawa R, Yasuike M, Leong J, von Schalburg KR, Cooper GA, Beetz-Sargent M, Robb A, Davidson WS, Jones SR, Koop BF.
  EST and mitochondrial DNA sequences support a distinct Pacific form of salmon louse, Lepeophtheirus salmonis.
  Mar Biotechnol (NY). 2008 Nov-Dec;10(6):741-9 doi: 10.1007/s10126-008-9112-y
  pmid: 18574633
• Abbott KL, Matthews RT, Pierce M.
  Receptor tyrosine phosphatase beta (RPTPbeta) activity and signaling are attenuated by glycosylation and subsequent cell surface galectin-1 binding.
  J Biol Chem. 2008 Nov 28;283(48):33026-35 doi: 10.1074/jbc.M803646200
  pmid: 18838383
• Adam V, Lelimousin M, Boehme S, Desfonds G, Nienhaus K, Field MJ, Wiedenmann J, McSweeney S, Nienhaus GU, Bourgeois D.
  Structural characterization of IrisFP, an optical highlighter undergoing multiple photo-induced transformations.
  Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18343-8 doi: 10.1073/pnas.0805949105
  pmid: 19017808
• Koop BF, von Schalburg KR, Leong J, Walker N, Lieph R, Cooper GA, Robb A, Beetz-Sargent M, Holt RA, Moore R, Brahmbhatt S, Rosner J, Rexroad CE 3rd, McGowan CR, Davidson WS.
  A salmonid EST genomic study: genes, duplications, phylogeny and microarrays.
  BMC Genomics. 2008 Nov 17;9:545 doi: 10.1186/1471-2164-9-545
  pmid: 19014685
• Grant DM, Zhang W, McGhee EJ, Bunney TD, Talbot CB, Kumar S, Munro I, Dunsby C, Neil MA, Katan M, French PM.
  Multiplexed FRET to image multiple signaling events in live cells.
  Biophys J. 2008 Nov 15;95(10):L69-71 doi: 10.1529/biophysj.108.139204
  pmid: 18757561
• Lai KO, Zhao Y, Ch'ng TH, Martin KC.
  Importin-mediated retrograde transport of CREB2 from distal processes to the nucleus in neurons.
  Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):17175-80 doi: 10.1073/pnas.0803906105
  pmid: 18957537
• Lartigue L, Medina C, Schembri L, Chabert P, Zanese M, Tomasello F, Dalibart R, Thoraval D, Crouzet M, Ichas F, De Giorgi F.
  An intracellular wave of cytochrome c propagates and precedes Bax redistribution during apoptosis.
  J Cell Sci. 2008 Nov 1;121(Pt 21):3515-23 doi: 10.1242/jcs.029587
  pmid: 18840646
• Roelofsen T, Akkers R, Beumer W, Apotheker M, Steeghs I, van de Ven J, Gelderblom C, Garritsen A, Dechering K.
  Sphingosine-1-phosphate acts as a developmental stage specific inhibitor of platelet-derived growth factor-induced chemotaxis of osteoblasts.
  J Cell Biochem. 2008 Nov 1;105(4):1128-38 doi: 10.1002/jcb.21915
  pmid: 18819098
• Ebine K, Okatani Y, Uemura T, Goh T, Shoda K, Niihama M, Morita MT, Spitzer C, Otegui MS, Nakano A, Ueda T.
  A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana.
  Plant Cell. 2008 Nov;20(11):3006-21 doi: 10.1105/tpc.107.057711
  pmid: 18984676
• Garbuz DG, Zatsepina OG, Przhiboro AA, Yushenova I, Guzhova IV, Evgen'ev MB.
  Larvae of related Diptera species from thermally contrasting habitats exhibit continuous up-regulation of heat shock proteins and high thermotolerance.
  Mol Ecol. 2008 Nov;17(21):4763-77 doi: 10.1111/j.1365-294X.2008.03947.x
  pmid: 19140990
• Nikapitiya C, De Zoysa M, Lee J.
  Molecular characterization and gene expression analysis of a pattern recognition protein from disk abalone, Haliotis discus discus.
  Fish Shellfish Immunol. 2008 Nov;25(5):638-47 doi: 10.1016/j.fsi.2008.08.002
  pmid: 18782621
• Niwa S, Tanaka Y, Hirokawa N.
  KIF1Bβ- and KIF1A-mediated axonal transport of presynaptic regulator Rab3 occurs in a GTP-dependent manner through DENN/MADD.
  Nat Cell Biol. 2008 Nov;10(11):1269-79 doi: 10.1038/ncb1785
  pmid: 18849981
• Ogundiwin EA, Marti C, Forment J, Pons C, Granell A, Gradziel TM, Peace CP, Crisosto CH.
  Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit.
  Plant Mol Biol. 2008 Nov;68(4-5):379-97 doi: 10.1007/s11103-008-9378-5
  pmid: 18661259
• Prokupek A, Hoffmann F, Eyun SI, Moriyama E, Zhou M, Harshman L.
  An evolutionary expressed sequence tag analysis of Drosophila spermatheca genes.
  Evolution. 2008 Nov;62(11):2936-47 doi: 10.1111/j.1558-5646.2008.00493.x
  pmid: 18752616
• Pletnev S, Shcherbo D, Chudakov DM, Pletneva N, Merzlyak EM, Wlodawer A, Dauter Z, Pletnev V.
  A crystallographic study of bright far-red fluorescent protein mKate reveals pH-induced cis-trans isomerization of the chromophore.
  J Biol Chem. 2008 Oct 24;283(43):28980-7 doi: 10.1074/jbc.M800599200
  pmid: 18682399
• Subach OM, Gundorov IS, Yoshimura M, Subach FV, Zhang J, Gruenwald D, Souslova EA, Chudakov DM, Verkhusha VV.
  Conversion of Red Fluorescent Protein into a Bright Blue Probe.
  Chem Biol. 2008 Oct 20;15(10):1116-24 doi: 10.1016/j.chembiol.2008.08.006
  pmid: 18940671
• Garcia-Bates TM, Bernstein SH, Phipps RP.
  Peroxisome proliferator-activated receptor gamma overexpression suppresses growth and induces apoptosis in human multiple myeloma cells.
  Clin Cancer Res. 2008 Oct 15;14(20):6414-25 doi: 10.1158/1078-0432.CCR-08-0457
  pmid: 18927280
• Bushman BS, Larson SR, Mott IW, Cliften PF, Wang RR, Chatterton NJ, Hernandez AG, Ali S, Kim RW, Thimmapuram J, Gong G, Liu L, Mikel MA.
  Development and annotation of perennial Triticeae ESTs and SSR markers.
  Genome. 2008 Oct;51(10):779-88 doi: 10.1139/G08-062
  pmid: 18923529
• Mahanama De Zoysaa, Wickramaarachchilage Anoja Pushpamalia, Chulhong Oha, Ilson Whangc, Se Jae Kimc and Jehee Lee.
  Transcriptional up-regulation of disk abalone selenium dependent glutathione peroxidase by H₂O₂ oxidative stress and Vibrio alginolyticus bacterial infection.
  Fish & Shellfish Immunology. 2008 Oct;25(4):446-57 http://www.sciencedirect.com
• Pogorelko G, Fursova O, Klimov E.
  Identification and Analysis of the Arabidopsis thaliana Atfas4 Gene Whose Overexpression Results in the Development of A Fasciated Stem.
  J Proteomics Bioinform. 2008 Oct;1(7):329-335
  pmid: 19295920
• Powers SK, Jackson MJ.
  Exercise-induced oxidative stress: cellular mechanisms and impact on muscle force production.
  Physiol Rev. 2008 Oct;88(4):1243-76 doi: 10.1152/physrev.00031.2007
  pmid: 18923182
• von Schalburg KR, Leong J, Cooper GA, Robb A, Beetz-Sargent MR, Lieph R, Holt RA, Moore R, Ewart KV, Driedzic WR, ten Hallers BF, Zhu B, de Jong PJ, Davidson WS, Koop BF.
  Rainbow smelt (Osmerus mordax) genomic library and EST resources.
  Mar Biotechnol (NY). 2008 Sep-Oct;10(5):487-91 doi: 10.1007/s10126-008-9089-6
  pmid: 18386095
• Ouyang M, Sun J, Chien S, Wang Y.
  Determination of hierarchical relationship of Src and Rac at subcellular locations with FRET biosensors.
  Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14353-8 doi: 10.1073/pnas.0807537105
  pmid: 18799748
• Manna D, Bhardwaj N, Vora MS, Stahelin RV, Lu H, Cho W.
  Differential roles of phosphatidylserine, PtdIns(4,5)P2, and PtdIns(3,4,5)P3 in plasma membrane targeting of C2 domains. Molecular dynamics simulation, membrane binding, and cell translocation studies of the PKCalpha C2 domain.
  J Biol Chem. 2008 Sep 19;283(38):26047-58 doi: 10.1074/jbc.M802617200
  pmid: 18621733
• Baker K, Holtzman NG, Burdine RD.
  Direct and indirect roles for Nodal signaling in two axis conversions during asymmetric morphogenesis of the zebrafish heart.
  Proc Natl Acad Sci U S A. 2008 Sep 16;105(37):13924-9 doi: 10.1073/pnas.0802159105
  pmid: 18784369
• Tachibana K, Hara M, Hattori Y, Kishimoto T.
  Cyclin B-cdk1 controls pronuclear union in interphase.
  Curr Biol. 2008 Sep 9;18(17):1308-13 doi: 10.1016/j.cub.2008.07.077
  pmid: 18701285
• Nokes RL, Fields IC, Collins RN, Folsch H.
  Rab13 regulates membrane trafficking between TGN and recycling endosomes in polarized epithelial cells.
  J Cell Biol. 2008 Sep 8;182(5):845-53 doi: 10.1083/jcb.200802176
  pmid: 18779367
• Greber D, El-Baba MD, Fussenegger M.
  Intronically encoded siRNAs improve dynamic range of mammalian gene regulation systems and toggle switch.
  Nucleic Acids Res. 2008 Sep;36(16):e101 doi: 10.1093/nar/gkn443
  pmid: 18632760
• Ohsawa S, Hamada S, Yoshida H, Miura M.
  Caspase-mediated changes in histone H1 in early apoptosis: prolonged caspase activation in developing olfactory sensory neurons.
  Cell Death Differ. 2008 Sep;15(9):1429-39 doi: 10.1038/cdd.2008.71
  pmid: 18483489
• Solstad T, Larsen AN, Seppola M, Jorgensen TO.
  Identification, cloning and expression analysis of a hepcidin cDNA of the Atlantic cod (Gadus morhua L.).
  Fish Shellfish Immunol. 2008 Sep;25(3):298-310 doi: 10.1016/j.fsi.2008.05.013
  pmid: 18602479
• Brautigam A, Shrestha RP, Whitten D, Wilkerson CG, Carr KM, Froehlich JE, Weber AP.
  Low-coverage massively parallel pyrosequencing of cDNAs enables proteomics in non-model species: comparison of a species-specific database generated by pyrosequencing with databases from related species for proteome analysis of pea chloroplast envelopes.
  J Biotechnol. 2008 Aug 31;136(1-2):44-53 doi: 10.1016/j.jbiotec.2008.02.007
  pmid: 18394738
• de la Fuente J, Maritz-Olivier C, Naranjo V, Ayoubi P, Nijhof AM, Almazan C, Canales M, Perez de la Lastra JM, Galindo RC, Blouin EF, Gortazar C, Jongejan F, Kocan KM.
  Evidence of the role of tick subolesin in gene expression.
  BMC Genomics. 2008 Aug 2;9:372 doi: 10.1186/1471-2164-9-372
  pmid: 18673577
• Duan Z, Weinstein EJ, Ji D, Ames RY, Choy E, Mankin H, Hornicek FJ.
  Lentiviral short hairpin RNA screen of genes associated with multidrug resistance identifies PRP-4 as a new regulator of chemoresistance in human ovarian cancer.
  Mol Cancer Ther. 2008 Aug;7(8):2377-85 doi: 10.1158/1535-7163.MCT-08-0316
  pmid: 18687998
• Held MA, Boulaflous A, Brandizzi F.
  Advances in fluorescent protein-based imaging for the analysis of plant endomembranes.
  Plant Physiol. 2008 Aug;147(4):1469-81 doi: 10.1104/pp.108.120147
  pmid: 18678739
• Koh SW, Chandrasekara K, Abbondandolo CJ, Coll TJ, Rutzen AR.
  VIP and VIP gene silencing modulation of differentiation marker N-cadherin and cell shape of corneal endothelium in human corneas ex vivo.
  Invest Ophthalmol Vis Sci. 2008 Aug;49(8):3491-8 doi: 10.1167/iovs.07-1543
  pmid: 18441300
• Stepanenko OV, Verkhusha VV, Kuznetsova IM, Uversky VN, Turoverov KK.
  Fluorescent proteins as biomarkers and biosensors: throwing color lights on molecular and cellular processes.
  Curr Protein Pept Sci. 2008 Aug;9(4):338-69 http://asb.aecom.yu.edu
  pmid: 18691124
• Wang YY, Yang Y, Chen Q, Yu J, Hou Y, Han L, He J, Jiao D, Yu H.
  Simultaneous knockdown of p18INK4C, p27Kip1 and MAD1 via RNA interference results in the expansion of long-term culture-initiating cells of murine bone marrow cells in vitro.
  Acta Biochim Biophys Sin (Shanghai). 2008 Aug;40(8):711-20
  pmid: 18685787
• Danilevich VN, Petrovskaya LE, Grishin EV.
  DNA nano- and microparticles: new products of polymerase chain reaction.
  Dokl Biochem Biophys. 2008 Jul-Aug;421:168-70 http://www.springerlink.com
  pmid: 18853764
• Deliolanis NC, Kasmieh R, Wurdinger T, Tannous BA, Shah K, Ntziachristos V.
  Performance of the red-shifted fluorescent proteins in deep-tissue molecular imaging applications.
  J Biomed Opt. 2008 Jul-Aug;13(4):044008 doi: 10.1117/1.2967184
  pmid: 19021336
• Kondrat'eva TF, Danilevich VN, Karavaiko GI.
  The primary structure and characteristics of the ISAfe600, an insertion sequence from Acidithiobacillus ferrooxidans strains.
  Mikrobiologiia. 2008 Jul-Aug;77(4):524-32 http://www.springerlink.com
  pmid: 18825980
• Marakhonov AV, Baranova AV, Skoblov MIu.
  Antisense regulation of human gene MAP3K13: true phenomenon or artifact?
  Mol Biol (Mosk). 2008 Jul-Aug;42(4):581-7 http://www.springerlink.com
  pmid: 18856057
• Turchin IV, Kamensky VA, Plehanov VI, Orlova AG, Kleshnin MS, Fiks II, Shirmanova MV, Meerovich IG, Arslanbaeva LR, Jerdeva VV, Savitsky AP.
  Fluorescence diffuse tomography for detection of red fluorescent protein expressed tumors in small animals.
  J Biomed Opt. 2008 Jul-Aug;13(4):041310 doi: 10.1117/1.2953528
  pmid: 19021318
• Anisimova VE, Shcheglov AS, Bogdanova EA, Rebrikov DV, Nekrasov AN, Barsova EV, Shagin DA, Lukyanov SA.
  Is crab duplex-specific nuclease a member of the Serratia family of non-specific nucleases?
  Gene. 2008 Jul 15;418(1-2):41-8 doi: 10.1016/j.gene.2008.04.005
  pmid: 18514436
• Oikawa T, Itoh T, Takenawa T.
  Sequential signals toward podosome formation in NIH-src cells.
  J Cell Biol. 2008 Jul 14;182(1):157-69 doi: 10.1083/jcb.200801042
  pmid: 18606851
• Yamauchi J, Miyamoto Y, Kusakawa S, Torii T, Mizutani R, Sanbe A, Nakajima H, Kiyokawa N, Tanoue A.
  Neurofibromatosis 2 tumor suppressor, the gene induced by valproic acid, mediates neurite outgrowth through interaction with paxillin.
  Exp Cell Res. 2008 Jul 1;314(11-12):2279-88 doi: 10.1016/j.yexcr.2008.03.019
  pmid: 18486129
• Brown MM, Williams TD, Chipman JK, Katsiadaki I, Sanders M, Craft JA.
  Construction of subtracted EST and normalised cDNA libraries from liver of chemical-exposed three-spined stickleback (Gasterosteus aculeatus) containing pollutant-responsive genes as a resource for transcriptome analysis.
  Mar Environ Res. 2008 Jul;66(1):127-30 doi: 10.1016/j.marenvres.2008.02.043
  pmid: 18397803
• Khan ZA, Boscolo E, Picard A, Psutka S, Melero-Martin JM, Bartch TC, Mulliken JB, Bischoff J.
  Multipotential stem cells recapitulate human infantile hemangioma in immunodeficient mice.
  J Clin Invest. 2008 Jul;118(7):2592-9 doi: 10.1172/JCI33493
  pmid: 18535669
• Paulmann D, Magulski T, Schwarz R, Heitmann L, Flehmig B, Vallbracht A, Dotzauer A.
  Hepatitis A virus protein 2B suppresses beta interferon (IFN) gene transcription by interfering with IFN regulatory factor 3 activation.
  J Gen Virol. 2008 Jul;89(Pt 7):1593-604 doi: 10.1099/vir.0.83521-0
  pmid: 18559929
• Novaes E, Drost DR, Farmerie WG, Pappas GJ Jr, Grattapaglia D, Sederoff RR, Kirst M.
  High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.
  BMC Genomics. 2008 Jun 30;9:312 doi: 10.1186/1471-2164-9-312
  pmid: 18590545
• Arrach N, Zhao M, Porwollik S, Hoffman RM, McClelland M.
  Salmonella promoters preferentially activated inside tumors.
  Cancer Res. 2008 Jun 15;68(12):4827-32 doi: 10.1158/0008-5472.CAN-08-0552
  pmid: 18559530
• Lin MZ, Glenn JS, Tsien RY.
  A drug-controllable tag for visualizing newly synthesized proteins in cells and whole animals.
  Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7744-9. doi: 10.1073/pnas.0803060105
  pmid: 18511556
• Baltrusch S, Lenzen S.
  Monitoring of glucose-regulated single insulin secretory granule movement by selective photoactivation.
  Diabetologia. 2008 Jun;51(6):989-96 doi: 10.1007/s00125-008-0979-y
  pmid: 18389213
• Garcia-Reyero N, Griffitt RJ, Liu L, Kroll KJ, Farmerie WG, Barber DS, Denslow ND.
  Construction of a robust microarray from a non-model species largemouth bass, Micropterus salmoides (Lacepede), using pyrosequencing technology.
  J Fish Biol. 2008 Jun;72(9):2354-76 http://www3.interscience.wiley.com
• Kapoor V, Karpov V, Linton C, Subach FV, Verkhusha VV, Telford WG.
  Solid state yellow and orange lasers for flow cytometry.
  Cytometry A. 2008 Jun;73(6):570-7 doi: 10.1002/cyto.a.20563
  pmid: 18449918
• Shaner NC, Lin MZ, McKeown MR, Steinbach PA, Hazelwood KL, Davidson MW, Tsien RY.
  Improving the photostability of bright monomeric orange and red fluorescent proteins.
  Nat Methods. 2008 Jun;5(6):545-51 doi: 10.1038/nmeth.1209
  pmid: 18454154
• Tian Y, Corkey RF, Yaney GC, Goforth PB, Satin LS, Moitoso de Vargas L.
  Differential modulation of L-type calcium channel subunits by oleate.
  Am J Physiol Endocrinol Metab. 2008 Jun;294(6):E1178-86 doi: 10.1152/ajpendo.90237.2008
  pmid: 18430963
• Winnard PT Jr, Pathak AP, Dhara S, Cho SY, Raman V, Pomper MG.
  Molecular imaging of metastatic potential.
  J Nucl Med. 2008 Jun;49 Suppl 2:96S-112S doi: 10.2967/jnumed.107.045948
  pmid: 18523068
• Glazkov MV, Drozd SF, Golovatenko-Abramov PK, Martynova MIu, Nesterova AP.
  Survival of transgenic mouse embryos carrying different genetic constructs.
  Ontogenez. 2008 May-Jun;39(3):208-11 http://www.springerlink.com
  pmid: 18634333
• Yamochi T, Ohnuma K, Hosono O, Tanaka H, Kanai Y, Morimoto C.
  SSA/Ro52 autoantigen interacts with Dcp2 to enhance its decapping activity.
  Biochem Biophys Res Commun. 2008 May 23;370(1):195-9 doi: 10.1016/j.bbrc.2008.03.075
  pmid: 18361920
• Anisimova VE, Rebrikov DV, Shagin DA, Kozhemyako VB, Menzorova NI, Staroverov DB, Ziganshin R, Vagner LL, Rasskazov VA, Lukyanov SA, Shcheglov AS.
  Isolation, characterization and molecular cloning of duplex-specific nuclease from the hepatopancreas of the Kamchatka crab.
  BMC Biochem. 2008 May 21;9:14 doi: 10.1186/1471-2091-9-14
  pmid: 18495036
• Logacheva MD, Samigullin TH, Dhingra A, Penin AA.
  Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale -a wild ancestor of cultivated buckwheat.
  BMC Plant Biol. 2008 May 20;8:59 doi: 10.1186/1471-2229-8-59
  pmid: 18492277
• Motley AM, Ward GP, Hettema EH.
  Dnm1p-dependent peroxisome fission requires Caf4p, Mdv1p and Fis1p.
  J Cell Sci. 2008 May 15;121(Pt 10):1633-40 doi: 10.1242/jcs.026344
  pmid: 18445678
• Kwok S, Lee C, Sanchez SA, Hazlett TL, Gratton E, Hayashi Y.
  Genetically encoded probe for fluorescence lifetime imaging of CaMKII activity.
  Biochem Biophys Res Commun. 2008 May 2;369(2):519-25 doi: 10.1016/j.bbrc.2008.02.070
  pmid: 18302935
• Chernov I, Stukacheva E, Akopov S, Didych D, Nikolaev L, Sverdlov E.
  A new technique for selective identification and mapping of enhancers within long genomic sequences.
  Biotechniques. 2008 May;44(6):775-84 doi: 10.2144/000112732
  pmid: 18476831
• Fischer HM, Wheat CW, Heckel DG, Vogel H.
  Evolutionary origins of a novel host plant detoxification gene in butterflies.
  Mol Biol Evol. 2008 May;25(5):809-20 doi: 10.1093/molbev/msn014
  pmid: 18296701
• Nikapitiya C, De Zoysa M, Kang HS, Oh C, Whang I, Lee J.
  Molecular characterization and expression analysis of regucalcin in disk abalone (Haliotis discus discus): Intramuscular calcium administration stimulates the regucalcin mRNA expression.
  Comp Biochem Physiol B Biochem Mol Biol. 2008 May;150(1):117-24 doi: 10.1016/j.cbpb.2008.02.004
  pmid: 18372203
• Witze ES, Litman ES, Argast GM, Moon RT, Ahn NG.
  Wnt5a control of cell polarity and directional movement by polarized redistribution of adhesion receptors.
  Science. 2008 Apr 18;320(5874):365-9. doi: 10.1126/science.1151250
  pmid: 18420933
• De Zoysa M, Pushpamali WA, Whang I, Kim SJ, Lee J.
  Mitochondrial thioredoxin-2 from disk abalone (Haliotis discus discus): Molecular characterization, tissue expression and DNA protection activity of its recombinant protein.
  Comp Biochem Physiol B Biochem Mol Biol. 2008 Apr;149(4):630-9 doi: 10.1016/j.cbpb.2007.12.009
  pmid: 18255328
• Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH.
  Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.
  Mol Ecol. 2008 Apr;17(7):1636-47 doi: 10.1111/j.1365-294X.2008.03666.x
  pmid: 18266620
• Wang L, Zhou GB, Liu P, Song JH, Liang Y, Yan XJ, Xu F, Wang BS, Mao JH, Shen ZX, Chen SJ, Chen Z.
  Dissection of mechanisms of Chinese medicinal formula Realgar-Indigo naturalis as an effective treatment for promyelocytic leukemia.
  Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4826-31 doi: 10.1073/pnas.0712365105
  pmid: 18344322
• Satoh T, Arii J, Suenaga T, Wang J, Kogure A, Uehori J, Arase N, Shiratori I, Tanaka S, Kawaguchi Y, Spear PG, Lanier LL, Arase H.
  PILRalpha is a herpes simplex virus-1 entry coreceptor that associates with glycoprotein B.
  Cell. 2008 Mar 21;132(6):935-44 doi: 10.1016/j.cell.2008.01.043
  pmid: 18358807
• Holmstrom TH, Mialon A, Kallio M, Nymalm Y, Mannermaa L, Holm T, Johansson H, Black E, Gillespie D, Salminen TA, Langel U, Valdez BC, Westermarck J.
  c-Jun Supports Ribosomal RNA Processing and Nucleolar Localization of RNA Helicase DDX21.
  J Biol Chem. 2008 Mar 14;283(11):7046-53 doi: 10.1074/jbc.M709613200
  pmid: 18180292
• Bogdanova EA, Shagin DA, Lukyanov SA.
  Normalization of full-length enriched cDNA.
  Mol Biosyst. 2008 Mar;4(3):205-12 doi: 10.1039/b715110c
  pmid: 18437263
• Ekanayake PM, De Zoysa M, Kang HS, Wan Q, Jee Y, Lee YH, Kim SJ, Lee J.
  Cloning, characterization and tissue expression of disk abalone (Haliotis discus discus) catalase.
  Fish Shellfish Immunol. 2008 Mar;24(3):267-78 doi: 10.1016/j.fsi.2007.11.007
  pmid: 18187341
• Hirayama S, Yamazaki Y, Kitamura A, Oda Y, Morito D, Okawa K, Kimura H, Cyr DM, Kubota H, Nagata K.
  MKKS Is a Centrosome-shuttling Protein Degraded by Disease-causing Mutations via CHIP-mediated Ubiquitination.
  Mol Biol Cell. 2008 Mar;19(3):899-911
  pmid: 18094050
• Martynova NY, Eroshkin FM, Ermolina LV, Ermakova GV, Korotaeva AL, Smurova KM, Gyoeva FK, Zaraisky AG.
  The LIM-domain protein Zyxin binds the homeodomain factor Xanf1/Hesx1 and modulates its activity in the anterior neural plate of Xenopus laevis embryo.
  Dev Dyn. 2008 Mar;237(3):736-49 doi: 10.1002/dvdy.21471
  pmid: 18297730
• Pushpamali WA, De Zoysa M, Kang HS, Oh CH, Whang I, Kim SJ, Lee J.
  Comparative study of two thioredoxin peroxidases from disk abalone (Haliotis discus discus): Cloning, recombinant protein purification, characterization of antioxidant activities and expression analysis.
  Fish Shellfish Immunol. 2008 Mar;24(3):294-307 doi: 10.1016/j.fsi.2007.11.016
  pmid: 18226547
• Chini V, Cattaneo AG, Rossi F, Bernardini G, Terova G, Saroglia M, Gornati R.
  Genes expressed in Blue Fin Tuna (Thunnus thynnus) liver and gonads.
  Gene. 2008 Feb 29;410(1):207-13 doi: 10.1016/j.gene.2007.12.012
  pmid: 18234455
• Salzburger W, Renn SC, Steinke D, Braasch I, Hofmann HA, Meyer A.
  Annotation of expressed sequence tags for the East African cichlid fish Astatotilapia burtoni and evolutionary analyses of cichlid ORFs.
  BMC Genomics. 2008 Feb 25;9:96 doi: 10.1186/1471-2164-9-96
  pmid: 18298844
• Chain FJ, Ilieva D, Evans BJ.
  Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization.
  BMC Evol Biol. 2008 Feb 8;8:43 doi: 10.1186/1471-2148-8-43
  pmid: 18261230
• Sohn YS, Breuer W, Munnich A, Cabantchik ZI.
  Redistribution of accumulated cell iron: a modality of chelation with therapeutic implications.
  Blood. 2008 Feb 1;111(3):1690-9
  pmid: 17975016
• Naumova OIu, Rychkov SIu, Morozova IIu, Khaiat SSh, Semikov AV, Zhukova OV.
  Mitochondrial DNA diversity in Siberian Tatars of the Tobol-Irtysh basin.
  Genetika. 2008 Feb;44(2):257-68 http://www.springerlink.com
  pmid: 18619046
• Seppola M, Larsen AN, Steiro K, Robertsen B, Jensen I.
  Characterisation and expression analysis of the interleukin genes, IL-1beta, IL-8 and IL-10, in Atlantic cod (Gadus morhua L.).
  Mol Immunol. 2008 Feb;45(4):887-97
  pmid: 17875325
• Zhao Y, Hoshiyama H, Shay JW, Wright WE.
  Quantitative telomeric overhang determination using a double-strand specific nuclease.
  Nucleic Acids Res. 2008 Feb;36(3):e14
  pmid: 18073199
• Belogurov AA Jr, Kurkova IN, Friboulet A, Thomas D, Misikov VK, Zakharova MY, Suchkov SV, Kotov SV, Alehin AI, Avalle B, Souslova EA, Morse HC 3rd, Gabibov AG, Ponomarenko NA.
  Recognition and degradation of myelin basic protein peptides by serum autoantibodies: novel biomarker for multiple sclerosis.
  J Immunol. 2008 Jan 15;180(2):1258-67
  pmid: 18178866
• Peng RH, Xiong AS, Xue Y, Li X, Liu JG, Cai B, Yao QH.
  Kamchatka crab duplex-specific nuclease-mediated transcriptome subtraction method for identifying long cDNAs of differentially expressed genes.
  Anal Biochem. 2008 Jan 15;372(2):148-55
  pmid: 17905189
• Kadereit B, Kumar P, Wang WJ, Miranda D, Snapp EL, Severina N, Torregroza I, Evans T, Silver DL.
  Evolutionarily conserved gene family important for fat storage.
  Proc Natl Acad Sci U S A. 2008 Jan 8;105(1):94-9
  pmid: 18160536
• Hoffman RM.
  A better fluorescent protein for whole-body imaging.
  Trends Biotechnol. 2008 Jan;26(1):1-4
  pmid: 18037177
• Weill CO, Biri S, Adib A, Erbacher P.
  A practical approach for intracellular protein delivery.
  Cytotechnology. 2008 Jan;56(1):41-8 doi: 10.1007/s10616-007-9102-3
  pmid: 19002840
• Bhattacharyya S, Kulesa PM, Fraser SE.
  Vital labeling of embryonic cells using fluorescent dyes and proteins.
  Methods Cell Biol. 2008;87:187-210 doi: 10.1016/S0091-679X(08)00210-0
  pmid: 18485298
• Cechova J, Baranek M, Pidra M.
  Optimization of the Preparation of ds cDNA from Flower Buds of Apricot for the cDNA-AFLP Analysis.
  I International Symposium on Biotechnology of Fruit Species: BIOTECHFRUIT2008. 2008; http://www.actahort.org/books
• Markvicheva KN, Bogdanova EA, Staroverov DB, Lukyanov S, Belousov VV.
  Imaging of intracellular hydrogen peroxide production with HyPer upon stimulation of HeLa cells with EGF.
  Methods Mol Biol. 2008;476:79-86
  pmid: 19157010
• Stark DA, Kasemeier-Kulesa JC, Kulesa PM.
  Photoactivation cell labeling for cell tracing in avian development.
  CSH Protocols. 2008; pdb.prot4975
• Stenkova AM, Isaeva MP, Rasskazov VA.
  Development of a multiplex PCR for detection of the Yersinia genus with identification of pathogenic species (Y. pestis, Y. pseudotuberculosis, Y. enterocolitica).
  Mol Gen Mikrobiol Virusol. 2008;(3):18-23 http://www.springerlink.com
  pmid: 18756819
• Wang N, Whang I, Lee J.
  A novel C-type lectin from abalone, Haliotis discus discus, agglutinates Vibrio alginolyticus.
  Dev Comp Immunol. 2008;32(9):1034-40 doi: 10.1016/j.dci.2008.02.001
  pmid: 18372041

2007

• Clark MS, Thorne MA, Purac J, Grubor-Lajsic G, Kube M, Reinhardt R, Worland MR.
  Surviving extreme polar winters by desiccation: clues from Arctic springtail (Onychiurus arcticus) EST libraries.
  BMC Genomics. 2007 Dec 21;8:475
  pmid: 18154659
• Shroff H, Galbraith CG, Galbraith JA, White H, Gillette J, Olenych S, Davidson MW, Betzig E.
  Dual-color superresolution imaging of genetically expressed probes within individual adhesion complexes.
  Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20308-13
  pmid: 18077327
• Miyamoto Y, Yamauchi J, Chan JR, Okada A, Tomooka Y, Hisanaga S, Tanoue A.
  Cdk5 regulates differentiation of oligodendrocyte precursor cells through the direct phosphorylation of paxillin.
  J Cell Sci. 2007 Dec 15;120(Pt 24):4355-66
  pmid: 18042622
• Shaner NC, Patterson GH, Davidson MW.
  Advances in fluorescent protein technology.
  J Cell Sci. 2007 Dec 15;120(Pt 24):4247-60
  pmid: 18057027
• Xia J, Liao L, Sarkar J, Matsumoto K, Reddy JK, Xu J, Kemper B.
  Redundant enhancement of mouse constitutive androstane receptor transactivation by p160 coactivator family members.
  Arch Biochem Biophys. 2007 Dec 1;468(1):49-57
  pmid: 17950690
• Bai X, Grewal PS.
  Identification of two down-regulated genes in entomopathogenic nematode Heterorhabditis bacteriophora infective juveniles upon contact with insect hemolymph.
  Mol Biochem Parasitol. 2007 Dec;156(2):162-6
  pmid: 17767967
• de la Fuente J, Blouin EF, Manzano-Roman R, Naranjo V, Almazan C, Perez de la Lastra JM, Zivkovic Z, Jongejan F, Kocan KM.
  Functional genomic studies of tick cells in response to infection with the cattle pathogen, Anaplasma marginale.
  Genomics. 2007 Dec;90(6):712-22
  pmid: 17964755
• Goodin MM, Chakrabarty R, Banerjee R, Yelton S, Debolt S.
  New gateways to discovery.
  Plant Physiol. 2007 Dec;145(4):1100-9
  pmid: 18056860
• Ramsey JS, Wilson AC, de Vos M, Sun Q, Tamborindeguy C, Winfield A, Malloch G, Smith DM, Fenton B, Gray SM, Jander G.
  Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design.
  BMC Genomics. 2007 Nov 16;8:423
  pmid: 18021414
• Xie YF, Wang BC, Li B, Cai YF, Xie L, Xia YX, Chang PA, Jiang HZ.
  Construction of cDNA library of cotton mutant (Xiangmian-18) library during gland forming stage.
  Colloids Surf B Biointerfaces. 2007 Nov 15;60(2):258-263
  pmid: 17689935
• He T, Zong S, Wu X, Wei Y, Xiang J
  CD4+ T cell acquisition of the bystander pMHC I colocalizing in the same immunological synapse comprising pMHC II and costimulatory CD40, CD54, CD80, OX40L, and 41BBL.
  Biochem Biophys Res Commun. 2007 Nov 3;362(4):822-8
  pmid: 17803957
• De Zoysa M, Lee J.
  Molecular cloning and expression analysis of interferon-gamma inducible lysosomal thiol reductase (GILT)-like cDNA from disk abalone (Haliotis discus discus).
  J Invertebr Pathol. 2007 Nov;96(3):221-9
  pmid: 17599346
• Jollivet F, Raposo G, Dimitrov A, Sougrat R, Goud B, Perez F.
  Analysis of de novo Golgi complex formation after enzyme-based inactivation.
  Mol Biol Cell. 2007 Nov;18(11):4637-47
  pmid: 17855505
• Condon KC, Condon GC, Dafa'alla TH, Forrester OT, Phillips CE, Scaife S, Alphey L.
  Germ-line transformation of the Mexican fruit fly.
  Insect Mol Biol. 2007 Oct;16(5):573-80
  pmid: 17894556
• Pletneva N, Pletnev V, Tikhonova T, Pakhomov AA, Popov V, Martynov VI, Wlodawer A, Dauter Z, Pletnev S.
  Refined crystal structures of red and green fluorescent proteins from the button polyp Zoanthus.
  Acta Crystallogr D Biol Crystallogr. 2007 Oct;63(Pt 10):1082-93
  pmid: 17881826
• Timmermans MJ, de Boer ME, Nota B, de Boer TE, Marien J, Klein-Lankhorst RM, van Straalen NM, Roelofs D.
  Collembase: a repository for springtail genomics and soil quality assessment.
  BMC Genomics. 2007 Sep 27;8:341
  pmid: 17900339
• Gonzalez-Ibeas D, Blanca J, Roig C, Gonzalez-To M, Pico B, Truniger V, Gomez P, Deleu W, Cano-Delgado A, Arus P, Nuez F, Garcia-Mas J, Puigdomenech P, Aranda MA.
  MELOGEN: an EST database for melon functional genomics.
  BMC Genomics. 2007 Sep 3;8:306
  pmid: 17767721
• Bell P, Vandenberghe LH, Wu D, Johnston J, Limberis M, Wilson JM.
  A comparative analysis of novel fluorescent proteins as reporters for gene transfer studies.
  J Histochem Cytochem. 2007 Sep;55(9):931-9
  pmid: 17510373
• Olenych SG, Claxton NS, Ottenberg GK, Davidson MW.
  The fluorescent protein color palette.
  Curr Protoc Cell Biol. 2007 Sep;Chapter 21:Unit 21.5 doi: 10.1002/0471143030.cb2105s36
  pmid: 18228502
• Seiffert M, Stilgenbauer S, Dohner H, Lichter P.
  Efficient nucleofection of primary human B cells and B-CLL cells induces apoptosis, which depends on the microenvironment and on the structure of transfected nucleic acids.
  Leukemia. 2007 Sep;21(9):1977-83
  pmid: 17637809
• Shcherbo D, Merzlyak EM, Chepurnykh TV, Fradkov AF, Ermakova GV, Solovieva EA, Lukyanov KA, Bogdanova EA, Zaraisky AG, Lukyanov S, Chudakov DM.
  Bright far-red fluorescent protein for whole-body imaging.
  Nat Methods. 2007 Sep;4(9):741-6
  pmid: 17721542
• Vaupotic T, Plemenitas A.
  Differential gene expression and Hog1 interaction with osmoresponsive genes in the extremely halotolerant black yeast Hortaea werneckii.
  BMC Genomics. 2007 Aug 16;8:280
  pmid: 17705830
• Kanemaru K, Okubo Y, Hirose K, Iino M.
  Regulation of neurite growth by spontaneous Ca²⁺ oscillations in astrocytes.
  J Neurosci. 2007 Aug 15;27(33):8957-66
  pmid: 17699677
• Yockteng R, Marthey S, Chiapello H, Gendrault A, Hood ME, Rodolphe F, Devier B, Wincker P, Dossat C, Giraud T.
  Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes.
  BMC Genomics. 2007 Aug 10;8:272
  pmid: 17692127
• Baker DJ, Wuenschell G, Xia L, Termini J, Bates SE, Riggs AD, O'Connor TR.
  Nucleotide excision repair eliminates unique DNA-protein cross-links from mammalian cells.
  J Biol Chem. 2007 Aug 3;282(31):22592-604
  pmid: 17507378
• Pletneva NV, Pletnev SV, Chudakov DM, Tikhonova TV, Popov VO, Martynov VI, Wlodawer A, Dauter Z, Pletnev VZ.
  Three-dimensional structure of yellow fluorescent protein zYFP538 from Zoanthus sp. at the resolution 1.8 angstrom.
  Bioorg Khim. 2007 Jul-Aug;33(4):421-30 http://www.springerlink.com
  pmid: 17886433
• Motley AM, Hettema EH
  Yeast peroxisomes multiply by growth and division.
  J Cell Biol. 2007 Jul 30;178(3):399-410
  pmid: 17646399
• Hattori H, Zhang X, Jia Y, Subramanian KK, Jo H, Loison F, Newburger PE, Luo HR.
  RNAi screen identifies UBE2D3 as a mediator of all-trans retinoic acid-induced cell growth arrest in human acute promyelocytic NB4 cells.
  Blood. 2007 Jul 15;110(2):640-50
  pmid: 17420285
• Abe Y, Takeuchi T, Kagawa-Miki L, Ueda N, Shigemoto K, Yasukawa M, Kito K.
  A mitotic kinase TOPK enhances Cdk1/cyclin B1-dependent phosphorylation of PRC1 and promotes cytokinesis.
  J Mol Biol. 2007 Jul 6;370(2):231-45
  pmid: 17512944
• Hong J, Doebele RC, Lingen MW, Quilliam LA, Tang WJ, Rosner MR.
  Anthrax edema toxin inhibits endothelial cell chemotaxis via Epac and Rap1.
  J Biol Chem. 2007 Jul 6;282(27):19781-7
  pmid: 17491018
• De Zoysa M, Kang HS, Song YB, Jee Y, Lee YD, Lee J.
  First report of invertebrate Mx: cloning, characterization and expression analysis of Mx cDNA in disk abalone (Haliotis discus discus).
  Fish Shellfish Immunol. 2007 Jul;23(1):86-96
  pmid: 17097889
• Hurtaud C, Gelly C, Chen Z, Levi-Meyrueis C, Bouillaud F.
  Glutamine stimulates translation of uncoupling protein 2mRNA.
  Cell Mol Life Sci. 2007 Jul;64(14):1853-60
  pmid: 17514359
• Li QB, Chen ZC, You Y, Zou P.
  Small interfering RNA of cyclooxygenase-2 induces growth inhibition and apoptosis independently of Bcl-2 in human myeloma RPMI8226 cells.
  Acta Pharmacol Sin. 2007 Jul;28(7):1031-6
  pmid: 17588340
• Merzlyak EM, Goedhart J, Shcherbo D, Bulina ME, Shcheglov AS, Fradkov AF, Gaintzeva A, Lukyanov KA, Lukyanov S, Gadella TW, Chudakov DM.
  Bright monomeric red fluorescent protein with an extended fluorescence lifetime.
  Nat Methods. 2007 Jul;4(7):555-7
  pmid: 17572680
• Souslova EA, Chudakov DM.
  Genetically encoded intracellular sensors based on fluorescent proteins.
  Biochemistry (Mosc). 2007 Jul;72(7):683-97
  pmid: 17680759
• Souslova EA, Belousov VV, Lock J, Stromblad S, Kasparov S, Bolshakov AP, Pinelis VG, Labas YA, Lukyanov S, Mayr LM, Chudakov DM.
  Single fluorescent protein-based Ca²⁺ sensors with increased dynamic range.
  BMC Biotechnol. 2007 Jun 29;7:37
  pmid: 17603870
• Abernathy JW, Xu P, Li P, Xu DH, Kucuktas H, Klesius P, Arias C, Liu Z.
  Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis.
  BMC Genomics. 2007 Jun 18;8:176
  pmid: 17577414
• Quilang J, Wang S, Li P, Abernathy J, Peatman E, Wang Y, Wang L, Shi Y, Wallace R, Guo X, Liu Z.
  Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers.
  BMC Genomics. 2007 Jun 8;8:157
  pmid: 17559679
• Douglas SE, Knickle LC, Kimball J, Reith ME.
  Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species.
  BMC Genomics. 2007 Jun 4;8:144
  pmid: 17547761
• Issa R, Xie S, Khorasani N, Sukkar M, Adcock IM, Lee KY, Chung KF.
  Corticosteroid inhibition of growth-related oncogene protein-alpha via mitogen-activated kinase phosphatase-1 in airway smooth muscle cells.
  J Immunol. 2007 Jun 1;178(11):7366-75
  pmid: 17513787
• Chiappetta G, De Marco C, Quintiero A, Califano D, Gherardi S, Malanga D, Scrima M, Montero-Conde C, Cito L, Monaco M, Motti ML, Pasquinelli R, Agosti V, Robledo M, Fusco A, Viglietto G.
  Overexpression of the S-phase kinase-associated protein 2 in thyroid cancer.
  Endocr Relat Cancer. 2007 Jun;14(2):405-20
  pmid: 17639054
• D'Autreaux F, Morikawa Y, Cserjesi P, Gershon MD.
  Hand2 is necessary for terminal differentiation of enteric neurons from crest-derived precursors but not for their migration into the gut or for formation of glia.
  Development. 2007 Jun;134(12):2237-49
  pmid: 17507395
• Stark DA, Kulesa PM.
  An in vivo comparison of photoactivatable fluorescent proteins in an avian embryo model.
  Dev Dyn. 2007 Jun;236(6):1583-94
  pmid: 17486622
• Mocz G.
  Fluorescent proteins and their use in marine biosciences, biotechnology, and proteomics.
  Mar Biotechnol (NY). 2007 May-Jun;9(3):305-28
  pmid: 17372780
• Yamauchi J, Miyamoto Y, Murabe M, Fujiwara Y, Sanbe A, Fujita Y, Murase S, Tanoue A.
  Gadd45a, the gene induced by the mood stabilizer valproic acid, regulates neurite outgrowth through JNK and the substrate paxillin in N1E-115 neuroblastoma cells.
  Exp Cell Res. 2007 May 15;313(9):1886-96
  pmid: 17428471
• Morimoto A, Matsunaga S, Kurihara D, Fukui K.
  Visualization of mitotic HeLa cells by advanced polarized light microscopy.
  Micron. 2007 May 10;
  pmid: 17560789
• Baltrusch S, Lenzen S.
  Novel insights into the regulation of the bound and diffusible glucokinase in MIN6 β-cells.
  Diabetes. 2007 May;56(5):1305-15
  pmid: 17287461
• Chudakov DM, Lukyanov S, Lukyanov KA.
  Using photoactivatable fluorescent protein Dendra2 to track protein movement.
  Biotechniques. 2007 May;42(5):553, 555, 557 passim
  pmid: 17515192
• Danley PD, Mullen SP, Liu F, Nene V, Quackenbush J, Shaw KL.
  A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution.
  BMC Genomics. 2007 Apr 25;8:109
  pmid: 17459168
• Ray P, Tsien R, Gambhir SS.
  Construction and validation of improved triple fusion reporter gene vectors for molecular imaging of living subjects.
  Cancer Res. 2007 Apr 1;67(7):3085-93
  pmid: 17409415
• Zhang L, Gurskaya NG, Merzlyak EM, Staroverov DB, Mudrik NN, Samarkina ON, Vinokurov LM, Lukyanov S, Lukyanov KA.
  Method for real-time monitoring of protein degradation at the single cell level.
  Biotechniques. 2007 Apr;42(4):446, 448, 450
  pmid: 17489230
• Pfister D, De Mulder K, Philipp I, Kuales G, Hrouda M, Eichberger P, Borgonie G, Hartenstein V, Ladurner P.
  The exceptional stem cell system of Macrostomum lignano: Screening for gene expression and studying cell proliferation by hydroxyurea treatment and irradiation.
  Front Zool. 2007 Mar 9;4:9
  pmid: 17349046
• Brueggemann LI, Moran CJ, Barakat JA, Yeh JZ, Cribbs LL, Byron KL.
  Vasopressin stimulates action potential firing by protein kinase C-dependent inhibition of KCNQ5 in A7r5 rat aortic smooth muscle cells.
  Am J Physiol Heart Circ Physiol. 2007 Mar;292(3):H1352-63
  pmid: 17071736
• Zaragosi LE, Billon N, Ailhaud G, Dani C.
  Nucleofection is a valuable transfection method for transient and stable transgene expression in adipose tissue-derived stem cells.
  Stem Cells. 2007 Mar;25(3):790-7
  pmid: 17158239
• Hultman KA, Bahary N, Zon LI, Johnson SL.
  Gene Duplication of the zebrafish kit ligand and partitioning of melanocyte development functions to kit ligand a.
  PLoS Genet. 2007 Jan 26;3(1):e17
  pmid: 17257055
• Ma LH, Liu H, Xiong H, Chen B, Zhang XW, Wang YY, Le HY, Huang QH, Zhang QH, Li BL, Chen Z, Chen SJ.
  Aberrant transcriptional regulation of the MLL fusion partner EEN by AML1-ETO and its implication in leukemogenesis.
  Blood. 2007 Jan 15;109(2):769-77
  pmid: 16990610
• Vedtofte L, Bodvarsdottir TB, Karlsen AE, Heller RS.
  Developmental biology of the Psammomys obesus pancreas: cloning and expression of the Neurogenin-3 gene.
  J Histochem Cytochem. 2007 Jan;55(1):97-104
  pmid: 16982847
• Chudakov DM, Lukyanov S, Lukyanov KA.
  Tracking intracellular protein movements using photoswitchable fluorescent proteins PS-CFP2 and Dendra2.
  Nat Protoc. 2007;2(8):2024-32
  pmid: 17703215
• G. McNamara and C.A. Boswell.
  A Thousand Proteins of Light: 15 Years of Advances in Fluorescent Proteins.
  In: Modern Research and Educational Topics in Microscopy. Microscopy book series (A. Mendez-Vilas, J. Diaz eds) ISBN-13: 978-84-611-9419-3. 2007;287-96 www.formatex.org/microscopy/
• Howe D.
  Identifying Candidate Genes Associated with Cold Adaptation in Douglas-fir using DNA Microarrays.
  Master of Science thesis (Oregon State University). 2007;P.118 http://hdl.handle.net/1957/3097
• Lukyanov S, Lukyanov K, Gurskaya N, Bogdanova E, Buzdin A.
  Selective suppression of polymerase chain reaction and its most popular applications.
  In: Nucleic Acids Hybridization: Modern Applications. Buzdin, Anton; Lukyanov, Sergey (Eds.) ISBN: 978-1-4020-6039-7. 2007;29-51 http://www.springerlink.com
• Lukyanov S, Rebrikov D, Buzdin A.
  Suppression subtractive hybridization.
  In: Nucleic Acids Hybridization: Modern Applications. Buzdin, Anton; Lukyanov, Sergey (Eds.) ISBN: 978-1-4020-6039-7. 2007;53-84 http://www.springerlink.com
• Shcheglov A, Zhulidov P, Bogdanova E, Shagin D.
  Normalization of cDNA Libraries.
  In: Nucleic Acids Hybridization: Modern Applications. Buzdin, Anton; Lukyanov, Sergey (Eds.) ISBN: 978-1-4020-6039-7. 2007;97-124 http://www.springerlink.com
• Smith C.
  Keeping tabs on fluorescent tags.
  Nat Methods. 2007;4(9):755-760 http://www.nature.com
• Stoner MA, Auerbach SS, Zamule SM, Strom SC, Omiecinski CJ.
  Transactivation of a DR-1 PPRE by a human constitutive androstane receptor variant expressed from internal protein translation start sites.
  Nucleic Acids Res. 2007;35(7):2177-90
  pmid: 17355985
• Wang J, Jemielity S, Uva P, Wurm Y, Graff J, Keller L.
  An annotated cDNA library and microarray for large-scale gene-expression studies in the ant Solenopsis invicta.
  Genome Biol. 2007;8(1):R9
  pmid: 17224046

2006

• Moroz LL, Edwards JR, Puthanveettil SV, Kohn AB, Ha T, Heyland A, Knudsen B, Sahni A, Yu F, Liu L, Jezzini S, Lovell P, Iannucculli W, Chen M, Nguyen T, Sheng H, Shaw R, Kalachikov S, Panchin YV, Farmerie W, Russo JJ, Ju J, Kandel ER.
  Neuronal transcriptome of aplysia: neuronal compartments and circuitry.
  Cell. 2006 Dec 29;127(7):1453-67
  pmid: 17190607
• Remington SJ.
  Fluorescent proteins: maturation, photochemistry and photophysics.
  Curr Opin Struct Biol. 2006 Dec;16(6):714-21
  pmid: 17064887
• Wolff M, Wiedenmann J, Nienhaus GU, Valler M, Heilker R.
  Novel fluorescent proteins for high-content screening.
  Drug Discov Today. 2006 Dec;11(23-24):1054-60
  pmid: 17129823
• Vallon M, Essler M.
  Proteolytically processed soluble tumor endothelial marker (TEM) 5 mediates endothelial cell survival during angiogenesis by linking integrin alpha(v)beta3 to glycosaminoglycans.
  J Biol Chem. 2006 Nov 10;281(45):34179-88
  pmid: 16982628
• Ebert A, Tittmann BR, Du J, Scheuchenzuber W.
  Technique for rapid in vitro single-cell elastography.
  Ultrasound Med Biol. 2006 Nov;32(11):1687-702
  pmid: 17112955
• Agarwal S, Harada J, Schreifels J, Lech P, Nikolai B, Yamaguchi T, Chanda SK, Somia NV.
  Isolation, characterization, and genetic complementation of a cellular mutant resistant to retroviral infection.
  Proc Natl Acad Sci U S A. 2006 Oct 24;103(43):15933-8
  pmid: 17043244
• Cheung F, Haas BJ, Goldberg SM, May GD, Xiao Y, Town CD.
  Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.
  BMC Genomics. 2006 Oct 24;7:272
  pmid: 17062153
• Chudakov DM, Chepurnykh TV, Belousov VV, Lukyanov S, Lukyanov KA.
  Fast and precise protein tracking using repeated reversible photoactivation.
  Traffic. 2006 Oct;7(10):1304-10
  pmid: 16889652
• Evdokimov AG, Pokross ME, Egorov NS, Zaraisky AG, Yampolsky IV, Merzlyak EM, Shkoporov AN, Sander I, Lukyanov KA, Chudakov DM.
  Structural basis for the fast maturation of Arthropoda green fluorescent protein.
  EMBO Rep. 2006 Oct;7(10):1006-12
  pmid: 16936637
• Serganova I , Moroz E, Moroz M, Pillarsetty N, Blasberg R
  Non-invasive molecular imaging and reporter genes.
  Central European Journal of Biology. 2006 1;1:88-123 http://www.springer.com/
• Patwari P, Higgins LJ, Chutkow WA, Yoshioka J, Lee RT.
  The interaction of thioredoxin with Txnip. Evidence for formation of a mixed disulfide by disulfide exchange.
  J Biol Chem. 2006 Aug 4;281(31):21884-91
  pmid: 16766796
• Fujibe T, Saji H, Watahiki MK, Yamamoto KT.
  Overexpression of the RADICAL-INDUCED CELL DEATH1 (RCD1) gene of Arabidopsis causes weak rcd1 phenotype with compromised oxidative-stress responses.
  Biosci Biotechnol Biochem. 2006 Aug;70(8):1827-31
  pmid: 16926493
• Hayakawa T, Kudo T, Ito T, Takahashi N, Yamaya T.
  ACT domain repeat protein 7, ACR7, interacts with a chaperone HSP18.0-CII in rice nuclei.
  Plant Cell Physiol. 2006 Jul;47(7):891-904
  pmid: 16720649
• Du C, Ge B, Liu Z, Fu K, Chan WC, McKeithan TW.
  PCR-based generation of shRNA libraries from cDNAs.
  BMC Biotechnol. 2006 Jun 21;6:28
  pmid: 16790063
• Wilmann PG, Battad J, Petersen J, Wilce MC, Dove S, Devenish RJ, Prescott M, Rossjohn J.
  The 2.1A crystal structure of copGFP, a representative member of the copepod clade within the green fluorescent protein superfamily.
  J Mol Biol. 2006 Jun 16;359(4):890-900
  pmid: 16697009
• Cohen EE, Lingen MW, Zhu B, Zhu H, Straza MW, Pierce C, Martin LE, Rosner MR.
  Protein kinase C zeta mediates epidermal growth factor-induced growth of head and neck tumor cells by regulating mitogen-activated protein kinase.
  Cancer Res. 2006 Jun 15;66(12):6296-303
  pmid: 16778206
• Henderson JN, Remington SJ.
  The kindling fluorescent protein: a transient photoswitchable marker.
  Physiology (Bethesda). 2006 Jun;21:162-70.
  pmid: 16714474
• Xu YX, Zhu ZY, Lo LC, Wang CM, Lin G, Feng F, Yue GH.
  Characterization of two parvalbumin genes and their association with growth traits in Asian seabass (Lates calcarifer).
  Anim Genet. 2006 Jun;37(3):266-8
  pmid: 16734689
• Gur'ianova OA, Makhanov M, Chenchik AA, Chumakov PM, Frolova EI.
  Genome-wide lentivector-based pooled shRNA library optimization.
  Mol Biol (Mosk). 2006 May-Jun;40(3):448-59 (in Russian)
  pmid: 16813164
• Abe Y, Takeuchi T, Imai Y, Murase R, Kamei Y, Fujibuchi T, Matsumoto S, Ueda N, Ogasawara M, Shigemoto K, Kito K.
  A Small Ras-like protein Ray/Rab1c modulates the p53-regulating activity of PRPK.
  Biochem Biophys Res Commun. 2006 May 26;344(1):377-85
  pmid: 16600182
• Efimov VA, Birikh KR, Staroverov DB, Lukyanov SA, Tereshina MB, Zaraisky AG, Chakhmakhcheva OG.
  Hydroxyproline-based DNA mimics provide an efficient gene silencing in vitro and in vivo.
  Nucleic Acids Res. 2006 May 2;34(8):2247-57
  pmid: 16670431
• Anisimova VE, Rebrikov DV, Zhulidov PA, Staroverov DB, Lukyanov SA, Shcheglov AS.
  Renaturation, activation, and practical use of recombinant duplex-specific nuclease from Kamchatka crab.
  Biochemistry (Mosc). 2006 May;71(5):513-9
  pmid: 16732729
• Suzuki S, Kanno M, Fujiwara T, Sugiyama H, Yokoyama A, Takahashi H, Tanaka J.
  Molecular cloning and characterization of Nop25, a novel nucleolar RNA binding protein, highly conserved in vertebrate species.
  Exp Cell Res. 2006 Apr 15;312(7):1031-41
  pmid: 16430885
• Giepmans BN, Adams SR, Ellisman MH, Tsien RY.
  The fluorescent toolbox for assessing protein location and function.
  Science. 2006 Apr 14;312(5771):217-24
  pmid: 16614209
• Belousov VV, Fradkov AF, Lukyanov KA, Staroverov DB, Shakhbazov KS, Terskikh AV, Lukyanov S.
  Genetically encoded fluorescent indicator for intracellular hydrogen peroxide.
  Nat Methods. 2006 Apr;3(4):281-6
  pmid: 16554833
• Gurskaya NG, Verkhusha VV, Shcheglov AS, Staroverov DB, Chepurnykh TV, Fradkov AF, Lukyanov S, Lukyanov KA.
  Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light.
  Nat Biotechnol. 2006 Apr;24(4):461-5
  pmid: 16550175
• Miracle A, Ankley G, Lattier D.
  Expression of two vitellogenin genes (vg1 and vg3) in fathead minnow (Pimephales promelas) liver in response to exposure to steroidal estrogens and androgens.
  Ecotoxicol Environ Saf. 2006 Mar;63(3):337-42
  pmid: 16464498
• Naranjo V, Hofle U, Vicente J, Martin MP, Ruiz-Fons F, Gortazar C, Kocan KM, de la Fuente J.
  Genes differentially expressed in oropharyngeal tonsils and mandibular lymph nodes of tuberculous and nontuberculous European wild boars naturally exposed to Mycobacterium bovis.
  FEMS Immunol Med Microbiol. 2006 Mar;46(2):298-312
  pmid: 16487312
• Souslova EA, Chudakov DM.
  Photoswitchable cyan fluorescent protein as a FRET donor.
  Microsc Res Tech. 2006 Mar;69(3):207-9
  pmid: 16538627
• Volik S, Raphael BJ, Huang G, Stratton MR, Bignel G, Murnane J, Brebner JH, Bajsarowicz K, Paris PL, Tao Q, Kowbel D, Lapuk A, Shagin DA, Shagina IA, Gray JW, Cheng JF, de Jong PJ, Pevzner P, Collins C.
  Decoding the fine-scale structure of a breast cancer genome and transcriptome.
  Genome Res. 2006 Mar;16(3):394-404
  pmid: 16461635
• Tateyama S, Horisawa K, Takashima H, Miyamoto-Sato E, Doi N, Yanagawa H.
  Affinity selection of DNA-binding protein complexes using mRNA display.
  Nucleic Acids Res. 2006 Feb 14;34(3):e27
  pmid: 16478713
• Simon A, Glöckner G, Felder M, Melkonian M, Becker B.
  EST analysis of the scaly green flagellate Mesostigma viride (Streptophyta): implications for the evolution of green plants (Viridiplantae).
  BMC Plant Biol. 2006 Feb 13;6:2
  pmid: 16476162
• McBeath AJ, Collet B, Paley R, Duraffour S, Aspehaug V, Biering E, Secombes CJ, Snow M.
  Identification of an interferon antagonist protein encoded by segment 7 of infectious salmon anaemia virus.
  Virus Res. 2006 Feb;115(2):176-84
  pmid: 16202469
• Sandhu SK, Jagdale GB, Hogenhout SA, Grewal PS.
  Comparative analysis of the expressed genome of the infective juvenile entomopathogenic nematode, Heterorhabditis bacteriophora.
  Mol Biochem Parasitol. 2006 Feb;145(2):239-44
  pmid: 16414368
• Rumi M, Ishihara S, Aziz M, Kazumori H, Ishimura N, Yuki T, Kadota C, Kadowaki Y, Kinoshita Y.
  RNA polymerase II mediated transcription from the polymerase III promoters in short hairpin RNA expression vector.
  Biochem Biophys Res Commun. 2006 Jan 13;339(2):540-7
  pmid: 16300730
• Bulina ME, Chudakov DM, Britanova OV, Yanushevich YG, Staroverov DB, Chepurnykh TV, Merzlyak EM, Shkrob MA, Lukyanov S, Lukyanov KA.
  A genetically encoded photosensitizer.
  Nat Biotechnol. 2006 Jan;24(1):95-9
  pmid: 16369538
• Deng W, Zhu X, Skogerbo G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, He H, Cui Y, Wang Y, Bu D, Chen R.
  Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.
  Genome Res. 2006 Jan;16(1):20-9
  pmid: 16344563
• Bulina ME, Lukyanov KA, Britanova OV, Onichtchouk D, Lukyanov S, Chudakov DM.
  Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed.
  Nat Protoc. 2006;1(2):947-53
  pmid: 17406328
• Gamas P, Debelle F., Berges H, Godiard L, Niebel A, Journet E, Gouzy J.
  Medicago truncatula cDNA and genomic libraries.
  In: The Medicago truncatula handbook. Mathesius U, Journet EP, Sumner LW (eds). ISBN 0-9754303-1-9. 2006; http://www.noble.org/MedicagoHandbook/
• Lukyanov KA, Chudakov DM, Fradkov AF, Labas YA, Matz MV, Lukyanov S.
  Discovery and properties of GFP-like proteins from nonbioluminescent anthozoa.
  Methods Biochem Anal. 2006;47:121-38
  pmid: 16335712
• Lukyanov KA, Chudakov DM, Fradkov AF, Labas YA, Matz MV, Lukyanov SA.
  Discovery and properties of GFP-like proteins from non-bioluminescent Anthozoa.
  In: Green fluorescent protein: properties and applications. Chalfie M, Kain S, (Eds). Willey-Liss, New York ISBN-13: 978-0-471-73682-0. 2006;121-38 http://books.google.com
• Xia J, Kim SH, Macmillan S, Truant R.
  Practical three color live cell imaging by widefield microscopy.
  Biol Proced Online. 2006;8:63-8
  pmid: 16909160

2005

• Chudakov DM, Lukyanov S, Lukyanov KA.
  Fluorescent proteins as a toolkit for in vivo imaging.
  Trends Biotechnol. 2005 Dec;23(12):605-13
  pmid: 16269193
• Shaner NC, Steinbach PA, Tsien RY.
  A guide to choosing fluorescent proteins.
  Nat Methods. 2005 Dec;2(12):905-9
  pmid: 16299475
• Altshuler IM, Zhulidov PA, Bogdanova EA, Mudrik NN, Shagin DA.
  Application of the duplex-specific nuclease preference method to the analysis of point mutations in human genes.
  Bioorg Khim. 2005 Nov-Dec;31(6):627-36 http://www.springerlink.com
  pmid: 16363136
• Hasdemir B, Fitzgerald DJ, Prior IA, Tepikin AV, Burgoyne RD.
  Traffic of Kv4 K+ channels mediated by KChIP1 is via a novel post-ER vesicular pathway.
  J Cell Biol. 2005 Nov 7;171(3):459-69
  pmid: 16260497
• Lukyanov KA, Chudakov DM, Lukyanov S, Verkhusha VV.
  Innovation: Photoactivatable fluorescent proteins.
  Nat Rev Mol Cell Biol. 2005 Nov;6(11):885-91
  pmid: 16167053
• Melton L.
  Imaging: the big picture.
  Nature. 2005 Sep 29;437(7059):775-9
  pmid: 16193058
• Zhu JX, Goldoni S, Bix G, Owens RT, McQuillan DJ, Reed CC, Iozzo RV.
  Decorin evokes protracted internalization and degradation of the epidermal growth factor receptor via caveolar endocytosis.
  J Biol Chem. 2005 Sep 16;280(37):32468-79
  pmid: 15994311
• Ozalp C, Szczesna-Skorupa E, Kemper B.
  Bimolecular fluorescence complementation analysis of cytochrome p450 2c2, 2e1, and NADPH-cytochrome p450 reductase molecular interactions in living cells.
  Drug Metab Dispos. 2005 Sep;33(9):1382-90
  pmid: 15980100
• Wang Z, Chua HK, Gusti AA, He F, Fenner B, Manopo I, Wang H, Kwang J.
  RING-H2 protein WSSV249 from white spot syndrome virus sequesters a shrimp ubiquitin-conjugating enzyme, PvUbc, for viral pathogenesis.
  J Virol. 2005 Jul;79(14):8764-72
  pmid: 15994770
• Nguyen B, Bowers RM, Wahlund TM, Read BA.
  Suppressive subtractive hybridization of and differences in gene expression content of calcifying and noncalcifying cultures of Emiliania huxleyi strain 1516.
  Appl Environ Microbiol. 2005 May;71(5):2564-75
  pmid: 15870347
• Quillin ML, Anstrom DM, Shu X, O'Leary S, Kallio K, Chudakov DM, Remington SJ.
  Kindling fluorescent protein from Anemonia sulcata: dark-state structure at 1.38 A resolution.
  Biochemistry. 2005 Apr 19;44(15):5774-87
  pmid: 15823036
• Abdeeva IA, Komakhin RA, Musiichuk KA, Goldenkova IV.
  The development of yeast vector system for study of regulational functions of eukaryotic noncoding elements.
  Mol Biol (Mosk). 2005 Mar-Apr;39(2):207-13 (in Russian)
  pmid: 15856943
• Zhulidov PA, Bogdanova EA, Shcheglov AS, Shagina IA, Wagner LL, Khazpekov GL, Kozhemyako VV, Lukyanov SA, Shagin DA.
  A method for the preparation of normalized cDNA libraries enriched with full-length sequences.
  Bioorg Khim. 2005 Mar-Apr;31(2):186-94 http://www.springerlink.com
  pmid: 15889793
• Yanushevich YG, Shagin DA, Fradkov AF, Shakhbazov KS, Barsova EV, Gurskaya NG, Labas YA, Matz MV, Lukyanov KA, Lukyanov SA.
  Spectral diversity among the members of the family of Green Fluorescent Protein in hydroid jellyfish (Cnidaria, Hydrozoa).
  Bioorg Khim. 2005 Jan-Feb;31(1):49-53 http://www.springerlink.com
  pmid: 15787213
• Wilmann PG, Petersen J, Devenish RJ, Prescott M, Rossjohn J.
  Variations on the GFP chromophore: A polypeptide fragmentation within the chromophore revealed in the 2.1-A crystal structure of a nonfluorescent chromoprotein from Anemonia sulcata.
  J Biol Chem. 2005 Jan 28;280(4):2401-4
  pmid: 15542608
• Diatchenko L, Slade GD, Nackley AG, Bhalang K, Sigurdsson A, Belfer I, Goldman D, Xu K, Shabalina SA, Shagin D, Max MB, Makarov SS, Maixner W.
  Genetic basis for individual variations in pain perception and the development of a chronic pain condition.
  Hum Mol Genet. 2005 Jan 1;14(1):135-43
  pmid: 15537663
• Peyker A, Rocks O, Bastiaens PI.
  Imaging activation of two Ras isoforms simultaneously in a single cell.
  Chembiochem. 2005 Jan;6(1):78-85
  pmid: 15637661
• Chudakov DM, and Lukyanov KA.
  Using photoactivatable GFPs to study protein dynamics and function.
  In: Jorde LB, Little PFR, Dunn MJ and Subramaniam S. (Eds), Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. John Wiley & Sons Ltd: Chichester. 2005;2129-37 http://books.google.com
• Comley J.
  HIGH CONTENT SCREENING emerging importance of novel reagents/probes and pathway analysis.
  Drug Discovery World Summer. 2005;31-53 http://clients.parabolasoft.co.uk

2004

• Lu L, Kwang J.
  Identification of a novel shrimp protein phosphatase and its association with latency-related ORF427 of white spot syndrome virus.
  FEBS Lett. 2004 Nov 5;577(1-2):141-6
  pmid: 15527775
• Chudakov DM, Verkhusha VV, Staroverov DB, Souslova EA, Lukyanov S, Lukyanov KA.
  Photoswitchable cyan fluorescent protein for protein tracking.
  Nat Biotechnol. 2004 Nov;22(11):1435-9
  pmid: 15502815
• Gelfand M.
  Doing Science in Uncertain Times.
  PLoS Biol. 2004 Jul;2(7):E214
  pmid: 15252457
• Shagin DA, Barsova EV, Yanushevich YG, Fradkov AF, Lukyanov KA, Labas YA, Semenova TN, Ugalde JA, Meyers A, Nunez JM, Widder EA, Lukyanov SA, Matz MV.
  GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity.
  Mol Biol Evol. 2004 May;21(5):841-50
  pmid: 14963095
• Zhulidov PA, Bogdanova EA, Shcheglov AS, Vagner LL, Khaspekov GL, Kozhemyako VB, Matz MV, Meleshkevitch E, Moroz LL, Lukyanov SA, Shagin DA.
  Simple cDNA normalization using kamchatka crab duplex-specific nuclease.
  Nucleic Acids Res. 2004 Feb 18;32(3):e37
  pmid: 14973331
• Hawley TS, Herbert DJ, Eaker SS, Hawley RG.
  Multiparameter flow cytometry of fluorescent protein reporters.
  Methods Mol Biol. 2004;263:219-38
  pmid: 14976369
• Rebrikov DV, Desai SM, Siebert PD, Lukyanov SA.
  Suppression subtractive hybridization.
  Methods Mol Biol. 2004;258:107-34
  pmid: 14970460