pTagRFP-zyxin vector

cat.# FP373

The vector sequence has been compiled using the information from sequence databases, published literature, and other sources, together with partial sequences obtained by Evrogen. This vector has not been completely sequenced.

Download vector information: Data sheet (pdf) Sequence (txt) Restriction map (pdf) Restriction table (pdf)

Product Cat.# Size Price pTagRFP-zyxin FP373 20 μg € 400.00 The price does not include delivery. The price varies in different countries. Please contact your local distributor for exact prices and delivery information. Vector type mammalian expression vector Reporter TagRFP Reporter codon usage mammalian Promoter for TagRFP PCMV IE Host cells mammalian Selection prokaryotic - kanamycin eukaryotic - neomycin (G418) Replication prokaryotic - pUC ori eukaryotic - SV40 ori Use red (orange) fluorescent labeling of zyxin

Vector description

pTagRFP-zyxin is a mammalian expression vector encoding TagRFP-zyxin fusion protein (see TagRFP description). The vector can be used for fluorescent labeling of zyxin in living cells.

TagRFP codon usage is optimized for high expression in mammalian cells, i.e. humanized (Haas et al., 1996). Human zyxin is fused to the TagRFP N-terminus.

pTagRFP-zyxin can be used as a source of TagRFP-zyxin hybrid sequence. The vector backbone contains unique restriction sites that permit it excision and further insertion into expression vector of choice.

The vector backbone also contains immediate early promoter of cytomegalovirus (P_{CMV IE}) for protein expression, SV40 origin for replication in mammalian cells expressing SV40 T-antigen, pUC origin of replication for propagation in E. coli, and f1 origin for single-stranded DNA production. SV40 polyadenylation signals (SV40 poly A) direct proper processing of the 3' end of the reporter mRNA.

SV40 early promoter (P_SV40) provides neomycin resistance gene (Neo^r) expression to select stably transfected eukaryotic cells using G418. Bacterial promoter (P) provides kanamycin resistance gene expression (Kan^r) in E. coli. Kan^r/Neo^r gene is linked with herpes simplex virus (HSV) thymidine kinase (TK) polyadenylation signals.

Expression in mammalian cells

pTagRFP-zyxin can be transfected into mammalian cells by any known transfection method. CMV promoter provides strong, constitutive expression of the TagRFP-zyxin fusion in eukaryotic cells. If required, stable transformants can be selected using G418 [Gorman, 1985].

Propagation in E. coli

Suitable host strains for propagation in E. coli include DH5alpha, HB101, XL1-Blue, and other general purpose strains. Plasmid incompatibility group is pMB1/ColE1. The vector confers resistance to kanamycin (30 μg/ml) to E. coli hosts. Copy number in E. coli is about 500.

Location of features

P_{CMV IE}: 1-589
Enhancer region: 59-465
TATA box: 554-560
Transcription start point: 583
Zyxin: 636-2348
TagRFP: 1941-2654
SV40 early mRNA polyadenylation signal
Polyadenylation signals: 2807-2812 & 2836-2841
mRNA 3' ends: 2845 & 2857
f1 single-strand DNA origin: 2904-3359
Bacterial promoter for expression of Kan^r gene
-35 region: 3421-3426
-10 region: 3444-3449
Transcription start point: 3456
SV40 origin of replication: 3700-3835
SV40 early promoter
Enhancer (72-bp tandem repeats): 3533-3604 & 3605-3676
21-bp repeats: 3680-3700, 3701-3721 & 3723-3743
Early promoter element: 3756-3762
Major transcription start points: 3752, 3790, 3796 & 3801
Kanamycin/neomycin resistance gene
Neomycin phosphotransferase coding sequences:
Start codon (ATG): 3884-3886
Stop codon: 4676-4678
G->A mutation to remove Pst I site: 4066
C->A (Arg to Ser) mutation to remove BssH II site: 4412
Herpes simplex virus (HSV) thymidine kinase (TK) polyadenylation signal
Polyadenylation signals: 4914-4919 & 4927-4932
pUC plasmid replication origin: 5263-5906