References citing Evrogen products & services

2013
  • Ryumina AP, Serebrovskaya EO, Shirmanova MV, Snopova LB, Kuznetsova MM, Turchin IV, Ignatova NI, Klementieva NV, Fradkov AF, Shakhov BE, Zagaynova EV, Lukyanov KA, Lukyanov SA.
    Flavoprotein miniSOG as a genetically encoded photosensitizer for cancer cells.
    Biochim Biophys Acta. 2013 Nov;1830(11):5059-67
    pmid: 23876295
  • Koczurkiewicz P, Podolak I, Skrzeczyńska-Moncznik J, Sarna M, Wójcik KA, Ryszawy D, Galanty A, Lasota S, Madeja Z, Czyż J, Michalik M.
    Triterpene saponosides from Lysimachia ciliata differentially attenuate invasive potential of prostate cancer cells.
    Chem Biol Interact. 2013 Oct 25;206(1):6-17
    pmid: 23954719
  • Matlashov MV, Belousov VV, Enikolopov G.
    How Much H2O2 Is Produced by Recombinant D-Amino Acid Oxidase in Mammalian Cells?
    Antioxid Redox Signal. 2013 Oct 23;[Epub ahead of print]
    pmid: 24020354
  • Ronen M, Shalaby S, Horwitz BA.
    Role of the transcription factor ChAP1 in cytoplasmic redox homeostasis: imaging with a genetically encoded sensor in the maize pathogen Cochliobolus heterostrophus.
    Mol Plant Pathol. 2013 Oct;14(8):786-90
    pmid: 23745603
  • Ronen M, Shalaby S, Horwitz BA.
    Role of the transcription factor ChAP1 in cytoplasmic redox homeostasis: imaging with a genetically encoded sensor in the maize pathogen Cochliobolus heterostrophus.
    Mol Plant Pathol. 2013 Oct;14(8):786-90
    pmid: 23934216
  • Kruzel ML, Actor JK, Zimecki M, Wise J, Płoszaj P, Mirza S, Kruzel M, Hwang SA, Ba X, Boldogh I.
    Novel recombinant human lactoferrin: Differential activation of oxidative stress related gene expression.
    J Biotechnol. 2013 Sep 23;pii: S0168-1656(13)00402-1. doi: 10.1016/j.jbiotec.2013.09.011. [Epub ahead of print]
    pmid: 24070904
  • Rosenfeld GE, Mercer EJ, Mason CE, Evans T.
    Small heat shock proteins Hspb7 and Hspb12 regulate early steps of cardiac morphogenesis.
    Dev Biol. 2013 Sep 15;381(2):389-400
    pmid: 23850773
  • Niescier RF, Chang KT, Min KT.
    Miro, MCU, and calcium: bridging our understanding of mitochondrial movement in axons.
    Front Cell Neurosci. 2013 Sep 10;7:148
    pmid: 24058334
  • Shaw JL, Chang KT.
    Nebula/DSCR1 Upregulation Delays Neurodegeneration and Protects against APP-Induced Axonal Transport Defects by Restoring Calcineurin and GSK-3β Signaling.
    PLoS Genet. 2013 Sep;9(9):e1003792
    pmid: 24086147
  • Wang B, Van Veldhoven PP, Brees C, Rubio N, Nordgren M, Apanasets O, Kunze M, Baes M, Agostinis P, Fransen M.
    Mitochondria are targets for peroxisome-derived oxidative stress in cultured mammalian cells.
    Free Radic Biol Med. 2013 Aug 27;65C:882-894
    pmid: 23988789
  • Kobayashi J, Shidara H, Morisawa Y, Kawakami M, Tanahashi Y, Hotta K, Oka K.
    A method for selective ablation of neurons in C. elegans using the phototoxic fluorescent protein, KillerRed.
    Neurosci Lett. 2013 Aug 26;548:261-4
    pmid: 23748043
  • Gaytán P, Roldán-Salgado A.
    Elimination of redundant and stop codons during the chemical synthesis of degenerate oligonucleotides. Combinatorial testing on the chromophore region of the red fluorescent protein mKate.
    ACS Synth Biol. 2013 Aug 16;2(8):453-62
    pmid: 23654278
  • Guess MG, Barthel KK, Pugach EK, Leinwand LA.
    Measuring microRNA reporter activity in skeletal muscle using hydrodynamic limb vein injection of plasmid DNA combined with in vivo imaging.
    Skelet Muscle. 2013 Aug 1;3(1):19
    pmid: 23915674
  • Grisham MB.
    Methods to detect hydrogen peroxide in living cells: Possibilities and pitfalls.
    Comp Biochem Physiol A Mol Integr Physiol. 2013 Aug;165(4):429-38
    pmid: 23396306
  • Espinosa A, Campos C, Díaz-Vegas A, Galgani JE, Juretic N, Osorio-Fuentealba C, Bucarey JL, Tapia G, Valenzuela R, Contreras-Ferrat A, Llanos P, Jaimovich E.
    Insulin-dependent H2O2 production is higher in muscle fibers of mice fed with a high-fat diet.
    Int J Mol Sci. 2013 Jul 29;14(8):15740-54
    pmid: 23899788
  • Zhdanov AV, Waters AH, Golubeva AV, Dmitriev RI, Papkovsky DB.
    Availability of the key metabolic substrates dictates the respiratory response of cancer cells to the mitochondrial uncoupling.
    Biochim Biophys Acta. 2013 Jul 23;1837(1):51-62
    pmid: 23891695
  • Waldeck W, Mueller G, Glatting KH, Hotz-Wagenblatt A, Diessl N, Chotewutmonti S, Langowski J, Semmler W, Wiessler M, Braun K.
    Spatial Localization of Genes Determined by Intranuclear DNA Fragmentation with the Fusion Proteins Lamin KRED and Histone KRED und Visible Light.
    Int J Med Sci. 2013 Jul 7;10(9):1136-48
    pmid: 23869190
  • Lee S, Lim WA, Thorn KS.
    Improved Blue, Green, and Red Fluorescent Protein Tagging Vectors for S. cerevisiae.
    PLoS One. 2013 Jul 2;8(7):e67902
    pmid: 23844123
  • Knorr DA, Bock A, Brentjens RJ, Kaufman DS.
    Engineered human embryonic stem cell-derived lymphocytes to study in vivo trafficking and immunotherapy.
    Stem Cells Dev. 2013 Jul 1;22(13):1861-9
    pmid: 23421330
  • Cheng WY, Larson JM, Samet JM.
    Monitoring intracellular oxidative events using dynamic spectral unmixing microscopy.
    Methods. 2013 Jun 29;pii: S1046-2023(13)00209-0. doi: 10.1016/j.ymeth.2013.06.008. [Epub ahead of print]
    pmid: 23816786
  • Alam R, Zylstra J, Fontaine DM, Branchini BR, Maye MM.
    Novel multistep BRET-FRET energy transfer using nanoconjugates of firefly proteins, quantum dots, and red fluorescent proteins.
    Nanoscale. 2013 Jun 21;5(12):5303-6
    pmid: 23685756
  • Cai D, Cohen KB, Luo T, Lichtman JW, Sanes JR.
    Improved tools for the Brainbow toolbox.
    Nat Methods. 2013 Jun;10(6):540-7
    pmid: 23866336
  • Pletneva NV, Pletnev VZ, Souslova E, Chudakov DM, Lukyanov S, Martynov VI, Arhipova S, Artemyev I, Wlodawer A, Dauter Z, Pletnev S.
    Yellow fluorescent protein phiYFPv (Phialidium): structure and structure-based mutagenesis.
    Acta Crystallogr D Biol Crystallogr. 2013 Jun;69(Pt 6):1005-12
    pmid: 23695245
  • Vijftigschild LA, van der Ent CK, Beekman JM.
    A novel fluorescent sensor for measurement of CFTR function by flow cytometry.
    Cytometry A. 2013 Jun;83(6):576-84
    pmid: 23463616
  • Eremeeva EV, Markova SV, Vysotski ES.
    Highly active BRET-reporter based on yellow mutant of Renilla muelleri luciferase.
    Dokl Biochem Biophys. 2013 May-Jun;450(1):147-50
    pmid: 23824457
  • Sun Q, Gao W, Loughran P, Shapiro R, Fan J, Billiar TR, Scott MJ.
    Caspase 1 activation is protective against hepatocyte cell death by up-regulating beclin 1 protein and mitochondrial autophagy in the setting of redox stress.
    J Biol Chem. 2013 May 31;288(22):15947-58
    pmid: 23589298
  • Lukyanov KA, Belousov VV.
    Genetically encoded fluorescent redox sensors.
    Biochim Biophys Acta. 2013 May 29;pii: S0304-4165(13)00226-2. doi: 10.1016/j.bbagen.2013.05.030. [Epub ahead of print]
    pmid: 23726987
  • Rivera-Molina F, Toomre D.
    Live-cell imaging of exocyst links its spatiotemporal dynamics to various stages of vesicle fusion.
    J Cell Biol. 2013 May 27;201(5):673-80
    pmid: 23690179
  • Kaludercic N, Carpi A, Nagayama T, Sivakumaran V, Zhu G, Lai EW, Bedja D, De Mario A, Chen K, Gabrielson KL, Lindsey ML, Pacak K, Takimoto E, Shih JC, Kass DA, Di Lisa F, Paolocci N.
    Monoamine Oxidase B Prompts Mitochondrial and Cardiac Dysfunction in Pressure Overloaded Hearts.
    Antioxid Redox Signal. 2013 May 22;[Epub ahead of print]
    pmid: 23581564
  • Heo JM, Nielson JR, Dephoure N, Gygi SP, Rutter J.
    Intramolecular interactions control Vms1 translocation to damaged mitochondria.
    Mol Biol Cell. 2013 May;24(9):1263-73
    pmid: 23468520
  • Martinelli R, Kamei M, Sage PT, Massol R, Varghese L, Sciuto T, Toporsian M, Dvorak AM, Kirchhausen T, Springer TA, Carman CV.
    Release of cellular tension signals self-restorative ventral lamellipodia to heal barrier micro-wounds.
    J Cell Biol. 2013 Apr 29;201(3):449-65
    pmid: 23629967
  • Hajas G, Bacsi A, Aguilera-Aguirre L, Hegde ML, Tapas KH, Sur S, Radak Z, Ba X, Boldogh I.
    8-Oxoguanine DNA glycosylase-1 links DNA repair to cellular signaling via the activation of the small GTPase Rac1.
    Free Radic Biol Med. 2013 Apr 21;61C:384-394
    pmid: 23612479
  • Kim E, Gordonov T, Liu Y, Bentley WE, Payne GF.
    Reverse engineering to suggest biologically relevant redox activities of phenolic materials.
    ACS Chem Biol. 2013 Apr 19;8(4):716-24
    pmid: 23320381
  • Erhart D, Zimmermann M, Jacques O, Wittwer MB, Ernst B, Constable E, Zvelebil M, Beaufils F, Wymann MP.
    Chemical development of intracellular protein heterodimerizers.
    Chem Biol. 2013 Apr 18;20(4):549-57
    pmid: 23601644
  • Mylle E, Codreanu MC, Boruc J, Russinova E.
    Emission spectra profiling of fluorescent proteins in living plant cells.
    Plant Methods. 2013 Apr 3;9(1):10
    pmid: 23552272
  • Birk J, Meyer M, Aller I, Hansen HG, Odermatt A, Dick TP, Meyer AJ, Appenzeller-Herzog C.
    Endoplasmic reticulum: reduced and oxidized glutathione revisited.
    J Cell Sci. 2013 Apr 1;126(Pt 7):1604-17
    pmid: 23424194
  • Andrio E, Marino D, Marmeys A, de Segonzac MD, Damiani I, Genre A, Huguet S, Frendo P, Puppo A, Pauly N.
    Hydrogen peroxide-regulated genes in the Medicago truncatula-Sinorhizobium meliloti symbiosis.
    New Phytol. 2013 Apr;198(1):179-89
    pmid: 23347006
  • Bose JL, Fey PD, Bayles KW.
    Genetic tools to enhance the study of gene function and regulation in Staphylococcus aureus.
    Appl Environ Microbiol. 2013 Apr;79(7):2218-24
    pmid: 23354696
  • Klimenko OV, Shtilman MI.
    Transfection of Kasumi-1 cells with a new type of polymer carriers loaded with miR-155 and antago-miR-155.
    Cancer Gene Ther. 2013 Apr;20(4):237-41
    pmid: 23538486
  • Panieri E, Gogvadze V, Norberg E, Venkatesh R, Orrenius S, Zhivotovsky B.
    Reactive oxygen species generated in different compartments induce cell death, survival, or senescence.
    Free Radic Biol Med. 2013 Apr;57:176-87
    pmid: 23295411
  • Mikhaylova M, Karpova A, Bär J, Bethge P, Yuanxiang P, Chen Y, Zuschratter W, Behnisch T, Kreutz MR.
    Cellular distribution of the NMDA-receptor activated synapto-nuclear messenger Jacob in the rat brain.
    Brain Struct Funct. 2013 Mar 29;[Epub ahead of print]
    pmid: 23539133
  • Bilan DS, Pase L, Joosen L, Gorokhovatsky AY, Ermakova YG, Gadella TW, Grabher C, Schultz C, Lukyanov S, Belousov VV.
    HyPer-3: a genetically encoded H(2)O(2) probe with improved performance for ratiometric and fluorescence lifetime imaging.
    ACS Chem Biol. 2013 Mar 15;8(3):535-42
    pmid: 23256573
  • Rask L, Fregil M, Høgdall E, Mitchelmore C, Eriksen J.
    Development of a metastatic fluorescent Lewis Lung carcinoma mouse model: Identification of mRNAs and microRNAs involved in tumor invasion.
    Gene. 2013 Mar 15;517(1):72-81
    pmid: 23296057
  • Richard M, Boulin T, Robert VJ, Richmond JE, Bessereau JL.
    Biosynthesis of ionotropic acetylcholine receptors requires the evolutionarily conserved ER membrane complex.
    Proc Natl Acad Sci U S A. 2013 Mar 12;110(11):E1055-63
    pmid: 23431131
  • Kitaguchi T, Oya M, Wada Y, Tsuboi T, Miyawaki A.
    Extracellular calcium influx activates adenylate cyclase 1 and potentiates insulin secretion in MIN6 cells.
    Biochem J. 2013 Mar 1;450(2):365-73
    pmid: 23282092
  • Gibbs-Flournoy EA, Simmons SO, Bromberg PA, Dick TP, Samet JM.
    Monitoring intracellular redox changes in ozone-exposed airway epithelial cells.
    Environ Health Perspect. 2013 Mar;121(3):312-7
    pmid: 23249900
  • Shirmanova MV, Serebrovskaya EO, Lukyanov KA, Snopova LB, Sirotkina MA, Prodanetz NN, Bugrova ML, Minakova EA, Turchin IV, Kamensky VA, Lukyanov SA, Zagaynova EV.
    Phototoxic effects of fluorescent protein KillerRed on tumor cells in mice.
    J Biophotonics. 2013 Mar;6(3):283-90
    pmid: 22696211
  • Wasserberg D, Nicosia C, Tromp EE, Subramaniam V, Huskens J, Jonkheijm P.
    Oriented Protein Immobilization using Covalent and Noncovalent Chemistry on a Thiol-Reactive Self-Reporting Surface.
    J Am Chem Soc. 2013 Feb 27;135(8):3104-11
    pmid: 23379762
  • Abe H, Wakabayashi R, Yonemura H, Yamada S, Goto M, Kamiya N.
    Split spy0128 as a potent scaffold for protein cross-linking and immobilization.
    Bioconjug Chem. 2013 Feb 20;24(2):242-50
    pmid: 23350748
  • Didych DA, Shamsutdinov MF, Smirnov NA, Akopov SB, Monastyrskaya GS, Uspenskaya NY, Nikolaev LG, Sverdlov ED.
    Human PSENEN and U2AF1L4 genes are concertedly regulated by a genuine bidirectional promoter.
    Gene. 2013 Feb 15;515(1):34-41
    pmid: 23246698
  • Gandhirajan RK, Meng S, Chandramoorthy HC, Mallilankaraman K, Mancarella S, Gao H, Razmpour R, Yang XF, Houser SR, Chen J, Koch WJ, Wang H, Soboloff J, Gill DL, Madesh M.
    Blockade of NOX2 and STIM1 signaling limits lipopolysaccharide-induced vascular inflammation.
    J Clin Invest. 2013 Feb 1;123(2):887-902
    pmid: 23348743
  • Bertz A, Ehlers JE, Wöhl-Bruhn S, Bunjes H, Gericke KH, Menzel H.
    Mobility of green fluorescent protein in hydrogel-based drug-delivery systems studied by anisotropy and fluorescence recovery after photobleaching.
    Macromol Biosci. 2013 Feb;13(2):215-26
    pmid: 23255283
  • Brynildsen MP, Winkler JA, Spina CS, MacDonald IC, Collins JJ.
    Potentiating antibacterial activity by predictably enhancing endogenous microbial ROS production.
    Nat Biotechnol. 2013 Feb;31(2):160-5
    pmid: 23292609
  • Love NR, Chen Y, Ishibashi S, Kritsiligkou P, Lea R, Koh Y, Gallop JL, Dorey K, Amaya E.
    Amputation-induced reactive oxygen species are required for successful Xenopus tadpole tail regeneration.
    Nat Cell Biol. 2013 Feb;15(2):222-8
    pmid: 23314862
  • Yoshihama Y, Izumisawa Y, Akimoto K, Satoh Y, Mizushima T, Satoh K, Chida K, Takagawa R, Akiyama H, Ichikawa Y, Kunisaki C, Inayama Y, Endo I, Nagashima Y, Ohno S.
    High expression of KIBRA in low atypical protein kinase C-expressing gastric cancer correlates with lymphatic invasion and poor prognosis.
    Cancer Sci. 2013 Feb;104(2):259-65
    pmid: 23163744
  • Kasymov V, Larina O, Castaldo C, Marina N, Patrushev M, Kasparov S, Gourine AV.
    Differential sensitivity of brainstem versus cortical astrocytes to changes in pH reveals functional regional specialization of astroglia.
    J Neurosci. 2013 Jan 9;33(2):435-41
    pmid: 23303924
  • Bonekamp NA, Islinger M, Lázaro MG, Schrader M.
    Cytochemical detection of peroxisomes and mitochondria.
    Methods Mol Biol. 2013;931:467-82
    pmid: 23027018
  • Hernández-Barrera A, Quinto C, Johnson EA, Wu HM, Cheung AY, Cárdenas L.
    Using hyper as a molecular probe to visualize hydrogen peroxide in living plant cells: a method with virtually unlimited potential in plant biology.
    Methods Enzymol. 2013;527:275-90
    pmid: 23830637
  • Karlsson T, Bolshakova A, Magalhães MA, Loitto VM, Magnusson KE.
    Fluxes of water through aquaporin 9 weaken membrane-cytoskeleton anchorage and promote formation of membrane protrusions.
    PLoS One. 2013;8(4):e59901
    pmid: 23573219
  • Mishina NM, Markvicheva KN, Bilan DS, Matlashov ME, Shirmanova MV, Liebl D, Schultz C, Lukyanov S, Belousov VV.
    Visualization of Intracellular Hydrogen Peroxide with HyPer, a Genetically Encoded Fluorescent Probe.
    Methods Enzymol. 2013;526:45-59
    pmid: 23791093
  • Mishina NM, Markvicheva KN, Fradkov AF, Zagaynova EV, Schultz C, Lukyanov S, Belousov VV.
    Imaging H2O2 Microdomains in Receptor Tyrosine Kinases Signaling.
    Methods Enzymol. 2013;526:175-87
    pmid: 23791101
2012
  • Viswanatha R, Ohouo PY, Smolka MB, Bretscher A.
    Local phosphocycling mediated by LOK/SLK restricts ezrin function to the apical aspect of epithelial cells.
    J Cell Biol. 2012 Dec 10;199(6):969-84
    pmid: 23209304
  • Hotard AL, Shaikh FY, Lee S, Yan D, Teng MN, Plemper RK, Crowe JE Jr, Moore ML.
    A stabilized respiratory syncytial virus reverse genetics system amenable to recombination-mediated mutagenesis.
    Virology. 2012 Dec 5;434(1):129-36
    pmid: 23062737
  • Sakurai C, Hashimoto H, Nakanishi H, Arai S, Wada Y, Sun-Wada GH, Wada I, Hatsuzawa K.
    SNAP-23 regulates phagosome formation and maturation in macrophages.
    Mol Biol Cell. 2012 Dec;23(24):4849-63
    pmid: 23087210
  • Shemiakina II, Ermakova GV, Cranfill PJ, Baird MA, Evans RA, Souslova EA, Staroverov DB, Gorokhovatsky AY, Putintseva EV, Gorodnicheva TV, Chepurnykh TV, Strukova L, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM, Shcherbo D.
    A monomeric red fluorescent protein with low cytotoxicity.
    Nat Commun. 2012 Nov 13;3:1204
    pmid: 23149748
  • Chai Y, Li W, Feng G, Yang Y, Wang X, Ou G.
    Live imaging of cellular dynamics during Caenorhabditis elegans postembryonic development.
    Nat Protoc. 2012 Nov 8;7(12):2090-102
    pmid: 23138350
  • de Rosny E, Carpentier P.
    GFP-Like Phototransformation Mechanisms in the Cytotoxic Fluorescent Protein KillerRed Unraveled by Structural and Spectroscopic Investigations.
    J Am Chem Soc. 2012 Oct 31;134(43):18015-21
    pmid: 23025285
  • Wang Y, Nartiss Y, Steipe B, McQuibban GA, Kim PK.
    ROS-induced mitochondrial depolarization initiates PARK2/PARKIN-dependent mitochondrial degradation by autophagy.
    Autophagy. 2012 Oct 1;8(10):1462-76
    pmid: 22889933
  • Pardo A, Stöcker M, Kampmeier F, Melmer G, Fischer R, Thepen T, Barth S.
    In vivo imaging of immunotoxin treatment using Katushka-transfected A-431 cells in a murine xenograft tumour model.
    Cancer Immunol Immunother. 2012 Oct;61(10):1617-26
    pmid: 22350071
  • Salomonnson E, Mihalko LA, Verkhusha VV, Luker KE, Luker GD.
    Cell-based and in vivo spectral analysis of fluorescent proteins for multiphoton microscopy.
    J Biomed Opt. 2012 Sep 1;17(9):96001
    pmid: 22975677
  • Pletnev S, Pletneva NV, Souslova EA, Chudakov DM, Lukyanov S, Wlodawer A, Dauter Z, Pletnev V.
    Structural basis for bathochromic shift of fluorescence in far-red fluorescent proteins eqFP650 and eqFP670.
    Acta Crystallogr D Biol Crystallogr. 2012 Sep;68(Pt 9):1088-97
    pmid: 22948909
  • Shibuya T, Tsujimoto Y.
    Deleterious effects of mitochondrial ROS generated by KillerRed photodynamic action in human cell lines and C. elegans.
    J Photochem Photobiol B. 2012 Aug 22;117C:1-12
    pmid: 23000754
  • Mishina NM, Bogeski I, Bolotin DA, Hoth M, Niemeyer BA, Schultz C, Zagaynova EV, Lukyanov S, Belousov VV.
    Can we see PIP(3) and hydrogen peroxide with a single probe?
    Antioxid Redox Signal. 2012 Aug 1;17(3):505-12
    pmid: 22369174
  • Zelmer A, Carroll P, Andreu N, Hagens K, Mahlo J, Redinger N, Robertson BD, Wiles S, Ward TH, Parish T, Ripoll J, Bancroft GJ, Schaible UE.
    A new in vivo model to test anti-tuberculosis drugs using fluorescence imaging.
    J Antimicrob Chemother. 2012 Aug;67(8):1948-60
    pmid: 22635525
  • Cao C, Chen Y, Masood R, Sinha UK, Kobielak A.
    α-Catulin Marks the Invasion Front of Squamous Cell Carcinoma and Is Important for Tumor Cell Metastasis.
    Mol Cancer Res. 2012 Jul;10(7):892-903
    pmid: 22648798
  • Telford WG, Hawley T, Subach F, Verkhusha V, Hawley RG.
    Flow cytometry of fluorescent proteins.
    Methods. 2012 Jul;57(3):318-30
    pmid: 22293036
  • Khan MJ, Rizwan Alam M, Waldeck-Weiermair M, Karsten F, Groschner L, Riederer M, Hallström S, Rockenfeller P, Konya V, Heinemann A, Madeo F, Graier WF, Malli R.
    Inhibition of autophagy rescues palmitic acid-induced necroptosis of endothelial cells.
    J Biol Chem. 2012 Jun 15;287(25):21110-20
    pmid: 22556413
  • Jacoby K, Metzger M, Shen BW, Certo MT, Jarjour J, Stoddard BL, Scharenberg AM.
    Expanding LAGLIDADG endonuclease scaffold diversity by rapidly surveying evolutionary sequence space.
    Nucleic Acids Res. 2012 Jun;40(11):4954-64
    pmid: 22334611
  • Zanet J, Jayo A, Plaza S, Millard T, Parsons M, Stramer B.
    Fascin promotes filopodia formation independent of its role in actin bundling.
    J Cell Biol. 2012 May 14;197(4):477-86
    pmid: 22564415
  • Godfrey R, Arora D, Bauer R, Stopp S, Müller JP, Heinrich T, Böhmer SA, Dagnell M, Schnetzke U, Scholl S, Östman A, Böhmer FD.
    Cell transformation by FLT3 ITD in acute myeloid leukemia involves oxidative inactivation of the tumor suppressor protein-tyrosine phosphatase DEP-1/ PTPRJ.
    Blood. 2012 May 10;119(19):4499-511
    pmid: 22438257
  • Deng X, Li Z, Zhang W.
    Transcriptome sequencing of Salmonella enterica serovar Enteritidis under desiccation and starvation stress in peanut oil.
    Food Microbiol. 2012 May;30(1):311-5
    pmid: 22265317
  • Iida R, Ueki M, Yasuda T.
    Identification of Rhit as a novel transcriptional repressor of human Mpv17-like protein with a mitigating effect on mitochondrial dysfunction, and its transcriptional regulation by FOXD3 and GABP.
    Free Radic Biol Med. 2012 Apr 15;52(8):1413-22
    pmid: 22306510
  • Gurskaya NG, Staroverov DB, Zhang L, Fradkov AF, Markina NM, Pereverzev AP, Lukyanov KA.
    Analysis of alternative splicing of cassette exons at single-cell level using two fluorescent proteins.
    Nucleic Acids Res. 2012 Apr 1;40(8):e57
    pmid: 22259036
  • Choi WG, Swanson SJ, Gilroy S.
    High-resolution imaging of Ca2+ , redox status, ROS and pH using GFP biosensors.
    Plant J. 2012 Apr;70(1):118-28
    pmid: 22449047
  • Yin BC, Liu YQ, Ye BC.
    One-Step, Multiplexed Fluorescence Detection of microRNAs Based on Duplex-Specific Nuclease Signal Amplification.
    J Am Chem Soc. 2012 Mar 21;134(11):5064-7
    pmid: 22394262
  • Ryan SD, Bhanot K, Ferrier A, De Repentigny Y, Chu A, Blais A, Kothary R.
    Microtubule stability, Golgi organization, and transport flux require dystonin-a2-MAP1B interaction.
    J Cell Biol. 2012 Mar 19;196(6):727-42
    pmid: 22412020
  • Anderson DD, Woeller CF, Chiang EP, Shane B, Stover PJ.
    Serine hydroxymethyltransferase anchors de novo thymidylate synthesis pathway to nuclear lamina for DNA synthesis.
    J Biol Chem. 2012 Mar 2;287(10):7051-62
    pmid: 22235121
  • Back P, De Vos WH, Depuydt GG, Matthijssens F, Vanfleteren JR, Braeckman BP.
    Exploring real-time in vivo redox biology of developing and aging Caenorhabditis elegans.
    Free Radic Biol Med. 2012 Mar 1;52(5):850-9
    pmid: 22226831
  • Numata T, Sato K, Christmann J, Marx R, Mori Y, Okada Y, Wehner F.
    The ΔC splice-variant of TRPM2 is the hypertonicity-induced cation channel in HeLa cells, and the ecto-enzyme CD38 mediates its activation.
    J Physiol. 2012 Mar 1;590(Pt 5):1121-38
    pmid: 22219339
  • Ray P, Lewin SA, Mihalko LA, Lesher-Perez SC, Takayama S, Luker KE, Luker GD.
    Secreted CXCL12 (SDF-1) forms dimers under physiological conditions.
    Biochem J. 2012 Mar 1;442(2):433-42
    pmid: 22142194
  • Dower K, Filone CM, Hodges EN, Bjornson ZB, Rubins KH, Brown LE, Schaus S, Hensley LE, Connor JH.
    Identification of a pyridopyrimidinone inhibitor of orthopoxviruses from a diversity-oriented synthesis library.
    J Virol. 2012 Mar;86(5):2632-40
    pmid: 22205744
  • Goh T, Joi S, Mimura T, Fukaki H.
    The establishment of asymmetry in Arabidopsis lateral root founder cells is regulated by LBD16/ASL18 and related LBD/ASL proteins.
    Development. 2012 Mar;139(5):883-93
    pmid: 22278921
  • Gusdon AM, Zhu J, Van Houten B, Chu CT.
    ATP13A2 regulates mitochondrial bioenergetics through macroautophagy.
    Neurobiol Dis. 2012 Mar;45(3):962-72
    pmid: 22198378
  • Sauvage C, Vagner M, Derôme N, Audet C, Bernatchez L.
    Coding Gene Single Nucleotide Polymorphism Mapping and Quantitative Trait Loci Detection for Physiological Reproductive Traits in Brook Charr, Salvelinus fontinalis.
    G3 (Bethesda). 2012 Mar;2(3):379-92
    pmid: 22413092
  • von Reumont BM, Jenner RA, Wills MA, Dell'ampio E, Pass G, Ebersberger I, Meyer B, Koenemann S, Iliffe TM, Stamatakis A, Niehuis O, Meusemann K, Misof B.
    Pancrustacean phylogeny in the light of new phylogenomic data: support for remipedia as the possible sister group of hexapoda.
    Mol Biol Evol. 2012 Mar;29(3):1031-45
    pmid: 22049065
  • Kyriazis GA, Soundarapandian MM, Tyrberg B.
    Sweet taste receptor signaling in beta cells mediates fructose-induced potentiation of glucose-stimulated insulin secretion.
    Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):E524-32
    pmid: 22315413
  • Navaroli DM, Bellvé KD, Standley C, Lifshitz LM, Cardia J, Lambright D, Leonard D, Fogarty KE, Corvera S.
    Rabenosyn-5 defines the fate of the transferrin receptor following clathrin-mediated endocytosis.
    Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):E471-80
    pmid: 22308388
  • Gijavanekar C, Strych U, Fofanov Y, Fox GE, Willson RC.
    Rare target enrichment for ultrasensitive PCR detection using cot-rehybridization and duplex-specific nuclease.
    Analytical Biochemistry. 2012 Feb 1;421(1):81-5
    pmid: 22155054
  • Cheng WY, Currier J, Bromberg PA, Silbajoris R, Simmons SO, Samet JM.
    Linking oxidative events to inflammatory and adaptive gene expression induced by exposure to an organic particulate matter component.
    Environ Health Perspect. 2012 Feb;120(2):267-74
    pmid: 21997482
  • Huang V, Place RF, Portnoy V, Wang J, Qi Z, Jia Z, Yu A, Shuman M, Yu J, Li LC.
    Upregulation of Cyclin B1 by miRNA and its implications in cancer.
    Nucleic Acids Res. 2012 Feb;40(4):1695-707
    pmid: 22053081
  • Lai Z, Kane NC, Kozik A, Hodgins KA, Dlugosch KM, Barker MS, Matvienko M, Yu Q, Turner KG, Pearl SA, Bell GD, Zou Y, Grassa C, Guggisberg A, Adams KL, Anderson JV, Horvath DP, Kesseli RV, Burke JM, Michelmore RW, Rieseberg LH.
    Genomics of Compositae weeds: EST libraries, microarrays, and evidence of introgression.
    Am J Bot. 2012 Feb;99(2):209-18
    pmid: 22058181
  • Sanders KM, Zhu MH, Britton F, Koh SD, Ward SM.
    Anoctamins and gastrointestinal smooth muscle excitability.
    Exp Physiol. 2012 Feb;97(2):200-6
    pmid: 22002868
  • Svistunova DM, Musinova YR, Polyakov VY, Sheval EV.
    A simple method for the immunocytochemical detection of proteins inside nuclear structures that are inaccessible to specific antibodies.
    J Histochem Cytochem. 2012 Feb;60(2):152-8
    pmid: 22114257
  • Swennenhuis JF, Foulk B, Coumans FA, Terstappen LW.
    Construction of repeat-free fluorescence in situ hybridization probes.
    Nucleic Acids Res. 2012 Feb;40(3):e20
    pmid: 22123742
  • Yoshii H, Yoshii Y, Asai T, Furukawa T, Takaichi S, Fujibayashi Y.
    Photo-excitation of carotenoids causes cytotoxicity via singlet oxygen production.
    Biochem Biophys Res Commun. 2012 Jan 6;417(1):640-5
    pmid: 22185691
  • Li B, Shahid R, Peshkepija P, Zimmer M.
    Water Diffusion In And Out Of The β-Barrel Of GFP and The Fast Maturing Fluorescent Protein, TurboGFP.
    Chem Phys. 2012 Jan 1;392(1):143-148
    pmid: 22582003
  • Lobert VH, Stenmark H.
    The ESCRT machinery mediates polarization of fibroblasts through regulation of myosin light chain.
    J Cell Sci. 2012 Jan 1;125(Pt 1):29-36
    pmid: 22266905
  • Murakami T, Yang SP, Xie L, Kawano T, Fu D, Mukai A, Bohm C, Chen F, Robertson J, Suzuki H, Tartaglia GG, Vendruscolo M, Kaminski Schierle GS, Chan FT, Moloney A, Crowther D, Kaminski CF, Zhen M, St George-Hyslop P.
    ALS mutations in FUS cause neuronal dysfunction and death in Caenorhabditis elegans by a dominant gain-of-function mechanism.
    Hum Mol Genet. 2012 Jan 1;21(1):1-9
    pmid: 21949354
  • Caysa H, Hoffmann S, Luetzkendorf J, Mueller LP, Unverzagt S, Mäder K, Mueller T.
    Monitoring of xenograft tumor growth and response to chemotherapy by non-invasive in vivo multispectral fluorescence imaging.
    PLoS One. 2012;7(10):e47927
    pmid: 23112873
  • Eaton CJ, Cabrera IE, Servin JA, Wright SJ, Cox MP, Borkovich KA.
    The Guanine Nucleotide Exchange Factor RIC8 Regulates Conidial Germination through Gα Proteins in Neurospora crassa.
    PLoS One. 2012;7(10):e48026
    pmid: 23118921
  • Feine I, Pinkas I, Salomon Y, Scherz A.
    Local oxidative stress expansion through endothelial cells--a key role for gap junction intercellular communication.
    PLoS One. 2012;7(7):e41633
    pmid: 22911831
  • Garczynski SF, Wanner KW, Unruh TR.
    Identification and initial characterization of the 3′ end of gene transcripts encoding putative members of the pheromone receptor subfamily in Lepidoptera.
    Insect Science. 2012;19(1):64-74 ISI:000299391800008 http://onlinelibrary.wiley.com
  • Miranda JG, Weaver AL, Qin Y, Park JG, Stoddard CI, Lin MZ, Palmer AE.
    New Alternately Colored FRET Sensors for Simultaneous Monitoring of Zn(2+) in Multiple Cellular Locations.
    PLoS One. 2012;7(11):e49371
    pmid: 23173058
  • Pase L, Nowell CJ, Lieschke GJ.
    In vivo real-time visualization of leukocytes and intracellular hydrogen peroxide levels during a zebrafish acute inflammation assay.
    Methods Enzymol. 2012;506:135-56
    pmid: 22341223
  • Savitsky AP, Rusanov AL, Zherdeva VV, Gorodnicheva TV, Khrenova MG, Nemukhin AV.
    FLIM-FRET Imaging of Caspase-3 Activity in Live Cells Using Pair of Red Fluorescent Proteins.
    Theranostics. 2012;2(2):215-26
    pmid: 22375160
  • Watakabe A, Kato S, Kobayashi K, Takaji M, Nakagami Y, Sadakane O, Ohtsuka M, Hioki H, Kaneko T, Okuno H, Kawashima T, Bito H, Kitamura Y, Yamamori T.
    Visualization of Cortical Projection Neurons with Retrograde TET-Off Lentiviral Vector.
    PLoS One. 2012;7(10):e46157
    pmid: 23071541
2011
  • Luker KE, Mihalko LA, Schmidt BT, Lewin SA, Ray P, Shcherbo D, Chudakov DM, Luker GD.
    In vivo imaging of ligand receptor binding with Gaussia luciferase complementation.
    Nat Med. 2011 Dec 4;18(1):172-7
    pmid: 22138753
  • Kondrychyn I, Teh C, Garcia-Lecea M, Guan Y, Kang A, Korzh V.
    Zebrafish Enhancer TRAP transgenic line database ZETRAP 2.0.
    Zebrafish. 2011 Dec;8(4):181-2
    pmid: 22181660
  • Love NR, Thuret R, Chen Y, Ishibashi S, Sabherwal N, Paredes R, Alves-Silva J, Dorey K, Noble AM, Guille MJ, Sasai Y, Papalopulu N, Amaya E.
    pTransgenesis: a cross-species, modular transgenesis resource.
    Development. 2011 Dec;138(24):5451-8
    pmid: 22110059
  • Saito C, Uemura T, Awai C, Ueda T, Abe H, Nakano A.
    Qualitative difference between "bulb" membranes and other vacuolar membranes.
    Plant Signal Behav. 2011 Dec;6(12):1914-7
    pmid: 22105033
  • Vanlangenakker N, Bertrand MJ, Bogaert P, Vandenabeele P, Vanden Berghe T.
    TNF-induced necroptosis in L929 cells is tightly regulated by multiple TNFR1 complex I and II members.
    Cell Death Dis. 2011 Nov 17;2:e230
    pmid: 22089168
  • Egami Y, Fukuda M, Araki N.
    Rab35 regulates phagosome formation through recruitment of ACAP2 in macrophages during FcγR-mediated phagocytosis.
    J Cell Sci. 2011 Nov 1;124(Pt 21):3557-67
    pmid: 22045739
  • Yi H, Cho YJ, Won S, Lee JE, Jin Yu H, Kim S, Schroth GP, Luo S, Chun J.
    Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq.
    Nucleic Acids Res. 2011 Nov 1;39(20):e140
    pmid: 21880599
  • Currie JD, Stewman S, Schimizzi G, Slep KC, Ma A, Rogers SL.
    The microtubule lattice and plus-end association of Drosophila Mini spindles is spatially regulated to fine-tune microtubule dynamics.
    Mol Biol Cell. 2011 Nov;22(22):4343-61
    pmid: 21965297
  • Glass C, Singla DK.
    MicroRNA-1 transfected embryonic stem cells enhance cardiac myocyte differentiation and inhibit apoptosis by modulating the PTEN/Akt pathway in the infarcted heart.
    Am J Physiol Heart Circ Physiol. 2011 Nov;301(5):H2038-49
    pmid: 21856911
  • Surakasi VP, Mohamed AA, Kim Y.
    RNA interference of β1 integrin subunit impairs development and immune responses of the beet armyworm, Spodoptera exigua.
    J Insect Physiol. 2011 Nov;57(11):1537-44
    pmid: 21856307
  • Housley GD.
    Recent insights into the regulation of breathing.
    Auton Neurosci. 2011 Oct 28;164(1-2):3-5
    pmid: 21852203
  • Werner ME, Hwang P, Huisman F, Taborek P, Yu CC, Mitchell BJ.
    Actin and microtubules drive differential aspects of planar cell polarity in multiciliated cells.
    J Cell Biol. 2011 Oct 3;195(1):19-26
    pmid: 21949415
  • Naoghare PK, Tak YK, Kim MJ, Han E, Song JM.
    Knock-down of argonaute 2 (AGO2) induces apoptosis in myeloid leukaemia cells and inhibits siRNA-mediated silencing of transfected oncogenes in HEK-293 cells.
    Basic Clin Pharmacol Toxicol. 2011 Oct;109(4):274-82
    pmid: 21535412
  • Wang X, Su B, Liu W, He X, Gao Y, Castellani RJ, Perry G, Smith MA, Zhu X.
    DLP1-dependent mitochondrial fragmentation mediates 1-methyl-4-phenylpyridinium toxicity in neurons: implications for Parkinson's disease.
    Aging Cell. 2011 Oct;10(5):807-23
    pmid: 21615675
  • Zuccaro A, Lahrmann U, Güldener U, Langen G, Pfiffi S, Biedenkopf D, Wong P, Samans B, Grimm C, Basiewicz M, Murat C, Martin F, Kogel KH.
    Endophytic life strategies decoded by genome and transcriptome analyses of the mutualistic root symbiont Piriformospora indica.
    PLoS Pathog. 2011 Oct;7(10):e1002290
    pmid: 22022265
  • Sartoretto JL, Kalwa H, Pluth MD, Lippard SJ, Michel T.
    Hydrogen peroxide differentially modulates cardiac myocyte nitric oxide synthesis.
    Proc Natl Acad Sci U S A. 2011 Sep 20;108(38):15792-7
    pmid: 21896719
  • Anderson DD, Quintero CM, Stover PJ.
    Identification of a de novo thymidylate biosynthesis pathway in mammalian mitochondria.
    Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15163-8
    pmid: 21876188
  • Chang KT, Niescier RF, Min KT.
    Mitochondrial matrix Ca2+ as an intrinsic signal regulating mitochondrial motility in axons.
    Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15456-61
    pmid: 21876166
  • Rigault P, Boyle B, Lepage P, Cooke JE, Bousquet J, MacKay JJ.
    A white spruce gene catalog for conifer genome analyses.
    Plant Physiol. 2011 Sep;157(1):14-28
    pmid: 21730200
  • Rondanino C, Poland PA, Kinlough CL, Li H, Rbaibi Y, Myerburg MM, Al-bataineh MM, Kashlan OB, Pastor-Soler NM, Hallows KR, Weisz OA, Apodaca G, Hughey RP.
    Galectin-7 modulates the length of the primary cilia and wound repair in polarized kidney epithelial cells.
    Am J Physiol Renal Physiol. 2011 Sep;301(3):F622-33
    pmid: 21677144
  • Su CL, Chao YT, Alex Chang YC, Chen WC, Chen CY, Lee AY, Hwa KT, Shih MC.
    De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome.
    Plant Cell Physiol. 2011 Sep;52(9):1501-14
    pmid: 21771864
  • Hayashi K, Suzuki A, Hirai S, Kurihara Y, Hoogenraad CC, Ohno S.
    Maintenance of dendritic spine morphology by partitioning-defective 1b through regulation of microtubule growth.
    J Neurosci. 2011 Aug 24;31(34):12094-103
    pmid: 21865452
  • Nadell CD, Bassler BL.
    A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms.
    Proc Natl Acad Sci U S A. 2011 Aug 23;108(34):14181-5
    pmid: 21825170
  • Bekal S, Domier LL, Niblack TL, Lambert KN.
    Discovery and initial analysis of novel viral genomes in the soybean cyst nematode.
    J Gen Virol. 2011 Aug;92(Pt 8):1870-9
    pmid: 21490246
  • Ciesek S, Westhaus S, Wicht M, Wappler I, Henschen S, Sarrazin C, Hamdi N, Abdelaziz AI, Strassburg CP, Wedemeyer H, Manns MP, Pietschmann T, von Hahn T.
    Impact of intra- and interspecies variation of occludin on its function as coreceptor for authentic hepatitis C virus particles.
    J Virol. 2011 Aug;85(15):7613-21
    pmid: 21632765
  • Tak YK, Naoghare PK, Han E, Song JM.
    VEGF inhibitor (Iressa) arrests histone deacetylase expression: single-cell cotransfection imaging cytometry for multi-target-multi-drug analysis.
    J Cell Physiol. 2011 Aug;226(8):2115-22
    pmid: 21520063
  • Wang L, Toomey NL, Diaz LA, Walker G, Ramos JC, Barber GN, Ning S.
    Oncogenic IRFs provide a survival advantage for Epstein-Barr virus- or human T-cell leukemia virus type 1-transformed cells through induction of BIC expression.
    J Virol. 2011 Aug;85(16):8328-37
    pmid: 21680528
  • Shagina IA, Bogdanova EA, Altshuler IM, Lukyanov SA, Shagin DA.
    Application of the duplex-specific nuclease for fast analysis of single nucleotide polymorphisms and detection of target DNA in complex PCR products.
    Bioorg Khim. 2011 Jul-Aug;37(4):522-9 (in Russian)
    pmid: 22096995
  • Lombardi ML, Jaalouk DE, Shanahan CM, Burke B, Roux KJ, Lammerding J.
    The interaction between nesprins and sun proteins at the nuclear envelope is critical for force transmission between the nucleus and cytoskeleton.
    J Biol Chem. 2011 Jul 29;286(30):26743-53
    pmid: 21652697
  • Shtutman M, Baig M, Levina E, Hurteau G, Lim CU, Broude E, Nikiforov M, Harkins TT, Carmack CS, Ding Y, Wieland F, Buttyan R, Roninson IB.
    Tumor-specific silencing of COPZ2 gene encoding coatomer protein complex subunit ζ 2 renders tumor cells dependent on its paralogous gene COPZ1.
    Proc Natl Acad Sci U S A. 2011 Jul 26;108(30):12449-54
    pmid: 21746916
  • Dragulescu-Andrasi A, Chan CT, De A, Massoud TF, Gambhir SS.
    Bioluminescence resonance energy transfer (BRET) imaging of protein-protein interactions within deep tissues of living subjects.
    Proc Natl Acad Sci U S A. 2011 Jul 19;108(29):12060-5
    pmid: 21730157
  • Liu M, Yuan M, Lou X, Mao H, Zheng D, Zou R, Zou N, Tang X, Zhao J.
    Label-free optical detection of single-base mismatches by the combination of nuclease and gold nanoparticles.
    Biosens Bioelectron. 2011 Jul 15;26(11):4294-300
    pmid: 21605966
  • Koga H, Martinez-Vicente M, Macian F, Verkhusha VV, Cuervo AM.
    A photoconvertible fluorescent reporter to track chaperone-mediated autophagy.
    Nat Commun. 2011 Jul 12;2:386
    pmid: 21750540
  • Orth JD, Kohler RH, Foijer F, Sorger PK, Weissleder R, Mitchison TJ.
    Analysis of mitosis and antimitotic drug responses in tumors by in vivo microscopy and single-cell pharmacodynamics.
    Cancer Res. 2011 Jul 1;71(13):4608-16
    pmid: 21712408
  • Pavlyukov MS, Antipova NV, Balashova MV, Vinogradova TV, Kopantzev EP, Shakhparonov MI.
    Survivin monomer plays an essential role in apoptosis regulation.
    J Biol Chem. 2011 Jul 1;286(26):23296-307
    pmid: 21536684
  • Snaith HA, Thompson J, Yates JR 3rd, Sawin KE.
    Characterization of Mug33 reveals complementary roles for actin cable-dependent transport and exocyst regulators in fission yeast exocytosis.
    J Cell Sci. 2011 Jul 1;124(Pt 13):2187-99
    pmid: 21652630
  • Adamidi C, Wang Y, Gruen D, Mastrobuoni G, You X, Tolle D, Dodt M, Mackowiak SD, Gogol-Doering A, Oenal P, Rybak A, Ross E, Sánchez Alvarado A, Kempa S, Dieterich C, Rajewsky N, Chen W.
    De novo assembly and validation of planaria transcriptome by massive parallel sequencing and shotgun proteomics.
    Genome Res. 2011 Jul;21(7):1193-200
    pmid: 21536722
  • Dower K, Rubins KH, Hensley LE, Connor JH.
    Development of Vaccinia reporter viruses for rapid, high content analysis of viral function at all stages of gene expression.
    Antiviral Res. 2011 Jul;91(1):72-80
    pmid: 21569797
  • Pletneva NV, Pletnev VZ, Shemiakina II, Chudakov DM, Artemyev I, Wlodawer A, Dauter Z, Pletnev S.
    Crystallographic study of red fluorescent protein eqFP578 and its far-red variant Katushka reveals opposite pH-induced isomerization of chromophore.
    Protein Sci. 2011 Jul;20(7):1265-74
    pmid: 21563226
  • Feldmeyer B, Wheat CW, Krezdorn N, Rotter B, Pfenninger M.
    Short read Illumina data for the de novo assembly of a non-model snail species transcriptome (Radix balthica, Basommatophora, Pulmonata), and a comparison of assembler performance.
    BMC Genomics. 2011 Jun 16;12:317
    pmid: 21679424
  • Vogel H, Altincicek B, Glöckner G, Vilcinskas A.
    A comprehensive transcriptome and immune-gene repertoire of the lepidopteran model host Galleria mellonella.
    BMC Genomics. 2011 Jun 11;12:308
    pmid: 21663692
  • Hojman P, Spanggaard I, Olsen CH, Gehl J, Gissel H.
    Calcium electrotransfer for termination of transgene expression in muscle.
    Hum Gene Ther. 2011 Jun;22(6):753-60
    pmid: 21470044
  • Luo H, Yang J, Jin H, Huang C, Fu J, Yang F, Gong H, Zeng S, Luo Q, Zhang Z.
    Tetrameric far-red fluorescent protein as a scaffold to assemble an octavalent peptide nanoprobe for enhanced tumor targeting and intracellular uptake in vivo.
    FASEB J. 2011 Jun;25(6):1865-73
    pmid: 21350116
  • Verreault M, Strutt D, Masin D, Fink D, Gill R, Bally MB.
    Development of glioblastoma cell lines expressing red fluorescence for non-invasive live imaging of intracranial tumors.
    Anticancer Res. 2011 Jun;31(6):2161-71
    pmid: 21737636
  • Brickley K, Stephenson FA.
    Trafficking kinesin protein (TRAK)-mediated transport of mitochondria in axons of hippocampal neurons.
    J Biol Chem. 2011 May 20;286(20):18079-92
    pmid: 21454691
  • Milan M, Coppe A, Reinhardt R, Cancela LM, Leite RB, Saavedra C, Ciofi C, Chelazzi G, Patarnello T, Bortoluzzi S, Bargelloni L.
    Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring.
    BMC Genomics. 2011 May 12;12:234
    pmid: 21569398
  • Vegh RB, Solntsev KM, Kuimova MK, Cho S, Liang Y, Loo BL, Tolbert LM, Bommarius AS.
    Reactive oxygen species in photochemistry of the red fluorescent protein "Killer Red".
    Chem Commun (Camb). 2011 May 7;47(17):4887-9
    pmid: 21359336
  • Grosse-Wilde E, Kuebler LS, Bucks S, Vogel H, Wicher D, Hansson BS.
    Antennal transcriptome of Manduca sexta.
    Proc Natl Acad Sci U S A. 2011 May 3;108(18):7449-54
    pmid: 21498690
  • Askar SF, Ramkisoensing AA, Schalij MJ, Bingen BO, Swildens J, van der Laarse A, Atsma DE, de Vries AA, Ypey DL, Pijnappels DA.
    Antiproliferative treatment of myofibroblasts prevents arrhythmias in vitro by limiting myofibroblast-induced depolarization.
    Cardiovasc Res. 2011 May 1;90(2):295-304
    pmid: 21233254
  • Liu X, Shi R, Zou D, Li Z, Liu X, Chen Y, Yang X, Zhou Y, Zheng D.
    Positive selection vector using the KillerRed gene.
    Anal Biochem. 2011 May 1;412(1):120-2
    pmid: 21284929
  • Schoggins JW, Wilson SJ, Panis M, Murphy MY, Jones CT, Bieniasz P, Rice CM.
    A diverse range of gene products are effectors of the type I interferon antiviral response.
    Nature. 2011 Apr 28;472(7344):481-5
    pmid: 21478870
  • McJunkin K, Mazurek A, Premsrirut PK, Zuber J, Dow LE, Simon J, Stillman B, Lowe SW.
    Reversible suppression of an essential gene in adult mice using transgenic RNA interference.
    Proc Natl Acad Sci U S A. 2011 Apr 26;108(17):7113-8
    pmid: 21482754
  • Morinaka A, Yamada M, Itofusa R, Funato Y, Yoshimura Y, Nakamura F, Yoshimura T, Kaibuchi K, Goshima Y, Hoshino M, Kamiguchi H, Miki H.
    Thioredoxin mediates oxidation-dependent phosphorylation of CRMP2 and growth cone collapse.
    Sci Signal. 2011 Apr 26;4(170):ra26
    pmid: 21521879
  • Fraser BA, Weadick CJ, Janowitz I, Rodd FH, Hughes KA.
    Sequencing and characterization of the guppy (Poecilia reticulata) transcriptome.
    BMC Genomics. 2011 Apr 20;12:202
    pmid: 21507250
  • Zhang Z, Wang Y, Wang S, Liu J, Warren W, Mitreva M, Walter RB.
    Transcriptome analysis of female and male Xiphophorus maculatus Jp 163 A.
    PLoS One. 2011 Apr 5;6(4):e18379
    pmid: 21483681
  • Francis SS, Sfakianos J, Lo B, Mellman I.
    A hierarchy of signals regulates entry of membrane proteins into the ciliary membrane domain in epithelial cells.
    J Cell Biol. 2011 Apr 4;193(1):219-33
    pmid: 21444686
  • Bowman S, Hubert S, Higgins B, Stone C, Kimball J, Borza T, Bussey JT, Simpson G, Kozera C, Curtis BA, Hall JR, Hori TS, Feng CY, Rise M, Booman M, Gamperl AK, Trippel E, Symonds J, Johnson SC, Rise ML.
    An integrated approach to gene discovery and marker development in Atlantic cod (Gadus morhua).
    Mar Biotechnol (NY). 2011 Apr;13(2):242-55
    pmid: 20396923
  • Christodoulou DC, Gorham JM, Herman DS, Seidman JG.
    Construction of normalized RNA-seq libraries for next-generation sequencing using the crab duplex-specific nuclease.
    Curr Protoc Mol Biol. 2011 Apr;Chapter 4:Unit4.12
    pmid: 21472699
  • Goto S, Mano S, Nakamori C, Nishimura M.
    Arabidopsis ABERRANT PEROXISOME MORPHOLOGY9 is a peroxin that recruits the PEX1-PEX6 complex to peroxisomes.
    Plant Cell. 2011 Apr;23(4):1573-87
    pmid: 21487094
  • Gu K, Chiam H, Tian D, Yin Z.
    Molecular cloning and expression of heteromeric ACCase subunit genes from Jatropha curcas.
    Plant Sci. 2011 Apr;180(4):642-9
    pmid: 21421413
  • Thierfelder S, Ostermann K, Göbel A, Rödel G.
    Vectors for glucose-dependent protein expression in Saccharomyces cerevisiae.
    Appl Biochem Biotechnol. 2011 Apr;163(8):954-64
    pmid: 20949330
  • Whitfield AE, Rotenberg D, Aritua V, Hogenhout SA.
    Analysis of expressed sequence tags from Maize mosaic rhabdovirus-infected gut tissues of Peregrinus maidis reveals the presence of key components of insect innate immunity.
    Insect Mol Biol. 2011 Apr;20(2):225-42
    pmid: 21199018
  • Garbuz DG, Yushenova IA, Zatsepina OG, Przhiboro AA, Bettencourt BR, Evgen'ev MB.
    Organization and evolution of hsp70 clusters strikingly differ in two species of Stratiomyidae (Diptera) inhabiting thermally contrasting environments.
    BMC Evol Biol. 2011 Mar 22;11:74
    pmid: 21426536
  • Mader CC, Oser M, Magalhaes MA, Bravo-Cordero JJ, Condeelis J, Koleske AJ, Gil-Henn H.
    An EGFR-Src-Arg-cortactin pathway mediates functional maturation of invadopodia and breast cancer cell invasion.
    Cancer Res. 2011 Mar 1;71(5):1730-41
    pmid: 21257711
  • Meerbrey KL, Hu G, Kessler JD, Roarty K, Li MZ, Fang JE, Herschkowitz JI, Burrows AE, Ciccia A, Sun T, Schmitt EM, Bernardi RJ, Fu X, Bland CS, Cooper TA, Schiff R, Rosen JM, Westbrook TF, Elledge SJ.
    The pINDUCER lentiviral toolkit for inducible RNA interference in vitro and in vivo.
    Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3665-70
    pmid: 21307310
  • Korzh V, Teh C, Kondrychyn I, Chudakov DM, Lukyanov S.
    Visualizing compound transgenic zebrafish in development: a tale of green fluorescent protein and KillerRed.
    Zebrafish. 2011 Mar;8(1):23-9
    pmid: 21348774
  • Lee S, Shrestha S, Prasad SV, Kim Y.
    Role of a small G protein Ras in cellular immune response of the beet armyworm, Spodoptera exigua.
    J Insect Physiol. 2011 Mar;57(3):356-62
    pmid: 21167168
  • Seeb JE, Pascal CE, Grau ED, Seeb LW, Templin WD, Harkins T, Roberts SB.
    Transcriptome sequencing and high-resolution melt analysis advance single nucleotide polymorphism discovery in duplicated salmonids.
    Mol Ecol Resour. 2011 Mar;11(2):335-48
    pmid: 21429141
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    An immunological role of a PKC alpha binding protein (PICK1) expressed in the hemocytes of the beet armyworm, Spodoptera exigua.
    Comp Biochem Physiol B Biochem Mol Biol. 2011 Mar;158(3):216-22
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    Understanding the pathogenesis of Alzheimer's disease: will RNA-Seq realize the promise of transcriptomics?
    J Neurochem. 2011 Mar;116(6):937-46
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    Determination in oocytes of the reproductive modes for the brine shrimp Artemia parthenogenetica.
    Biosci Rep. 2011 Feb;31(1):17-30
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    Development of infectious transcripts from full-length and GFP-tagged cDNA clones of Pepper mottle virus and stable systemic expression of GFP in tobacco and pepper.
    Virus Res. 2011 Feb;155(2):487-94
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    Integration of Hedgehog and BMP signalling by the engrailed2a gene in the zebrafish myotome.
    Development. 2011 Feb;138(4):755-65
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    Precise measurement of protein interacting fractions with fluorescence lifetime imaging microscopy.
    Mol Biosyst. 2011 Feb;7(2):322-36
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    Antibody response to polyhistidine-tagged peptide and protein antigens attached to liposomes via lipid-linked nitrilotriacetic acid in mice.
    Clin Vaccine Immunol. 2011 Feb;18(2):289-97
    pmid: 21159923
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    Pyrosequencing the transcriptome of the greenhouse whitefly, Trialeurodes vaporariorum reveals multiple transcripts encoding insecticide targets and detoxifying enzymes.
    BMC Genomics. 2011 Jan 24;12:56
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    Positioning effects of KillerRed inside of cells correlate with DNA strand breaks after activation with visible light.
    Int J Med Sci. 2011 Jan 21;8(2):97-105
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    Quantification of photosensitized singlet oxygen production by a fluorescent protein.
    Chemphyschem. 2011 Jan 17;12(1):161-5
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    The kinesin KIF9 and reggie/flotillin proteins regulate matrix degradation by macrophage podosomes.
    Mol Biol Cell. 2011 Jan 15;22(2):202-15
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    De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum).
    BMC Genomics. 2011 Jan 13;12:30
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    A Cre-reporter transgenic mouse expressing the far-red fluorescent protein Katushka.
    Genesis. 2011 Jan;49(1):36-45
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    Peroxisome-generated hydrogen peroxide as important mediator of lipotoxicity in insulin-producing cells.
    Diabetes. 2011 Jan;60(1):200-8
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    Optogenetic experimentation on astrocytes.
    Exp Physiol. 2011 Jan;96(1):40-50
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    p120 regulates endothelial permeability independently of its NH2 terminus and Rho binding.
    Am J Physiol Heart Circ Physiol. 2011 Jan;300(1):H36-48
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    Optogenetic monitoring of membrane potentials.
    Exp Physiol. 2011 Jan;96(1):13-8
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    Stability and tick transmission phenotype of gfp-transformed Anaplasma marginale through a complete in vivo infection cycle.
    Appl Environ Microbiol. 2011 Jan;77(1):330-4
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    Endosymbiotic gene transfer and transcriptional regulation of transferred genes in Paulinella chromatophora.
    Mol Biol Evol. 2011 Jan;28(1):407-22
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    Normalization of full-length-enriched cDNA.
    Methods Mol Biol. 2011;729:85-98
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    Preparation of prokaryotic cDNA for full-scale transcriptome analysis.
    Russian Journal of Bioorganic Chemistry. 2011;37(6):775-8 ISI:000297344600012 http://www.springerlink.com
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    DNA nicks promote efficient and safe targeted gene correction.
    PLoS One. 2011;6(9):e23981
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    Defining the transcriptome assembly and its use for genome dynamics and transcriptome profiling studies in pigeonpea (Cajanus cajan L.).
    DNA Res. 2011;18(3):153-64
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    Functional organization of hsp70 cluster in camel (Camelus dromedarius) and other mammals.
    PLoS One. 2011;6(11):e27205
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    Construction of a Normalized Full-Length cDNA Library of Sesame Developing Seed by DSN and SMART™.
    Agricultural Sciences in China. 2011;10(7):1004-9
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    The Use of Duplex-Specific Crab Nuclease for Rapid Analysis of Single-Nucleotide Polymorphisms and the Detection of DNA Targets in Complex PCR Products.
    Russian Journal of Bioorganic Chemistry. 2011;37(4):464-71 ISI:000295533100010 http://www.springerlink.com
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    Transcriptome analysis of sarracenia, an insectivorous plant.
    DNA Res. 2011;18(4):253-61
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    Molecular mechanism of a green-shifted, pH-dependent red fluorescent protein mKate variant.
    PLoS One. 2011;6(8):e23513
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    Telomere G-overhang length measurement method 1: the DSN method.
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2010
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    The habenula prevents helpless behavior in larval zebrafish.
    Curr Biol. 2010 Dec 21;20(24):2211-6
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    Diversity of beetle genes encoding novel plant cell wall degrading enzymes.
    PLoS One. 2010 Dec 17;5(12):e15635
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    Deep sequencing of New World screw-worm transcripts to discover genes involved in insecticide resistance.
    BMC Genomics. 2010 Dec 8;11:695
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  • Gong P, Pirooznia M, Guan X, Perkins EJ.
    Design, validation and annotation of transcriptome-wide oligonucleotide probes for the oligochaete annelid Eisenia fetida.
    PLoS One. 2010 Dec 8;5(12):e14266
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    beta1A integrin is a master regulator of invadosome organization and function.
    Mol Biol Cell. 2010 Dec;21(23):4108-19
    pmid: 20926684
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    Massively parallel sequencing and analysis of expressed sequence tags in a successful invasive plant.
    Ann Bot. 2010 Dec;106(6):1009-17
    pmid: 20929896
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    Lifetime imaging of FRET between red fluorescent proteins.
    J Biophotonics. 2010 Dec;3(12):774-83
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    An orthotopic model of serous ovarian cancer in immunocompetent mice for in vivo tumor imaging and monitoring of tumor immune responses.
    J Vis Exp. 2010 Nov 28;(45)
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    Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered European eel.
    BMC Genomics. 2010 Nov 16;11:635
    pmid: 21080939
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    Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites.
    Proc Natl Acad Sci U S A. 2010 Nov 16;107(46):19873-8
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    Mining the bitter melon (momordica charantia l.) seed transcriptome by 454 analysis of non-normalized and normalized cDNA populations for conjugated fatty acid metabolism-related genes.
    BMC Plant Biol. 2010 Nov 16;10:250
    pmid: 21080948
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    Membrane delivery to the yeast autophagosome from the Golgi-endosomal system.
    Mol Biol Cell. 2010 Nov 15;21(22):3998-4008
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    Optogenetic in vivo cell manipulation in KillerRed-expressing zebrafish transgenics.
    BMC Dev Biol. 2010 Nov 2;10:110
    pmid: 21040591
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    Differential localization of mRNAs during early development in the mollusc, Crepidula fornicata.
    Integr Comp Biol. 2010 Nov;50(5):720-33
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    Characterizing the embryonic transcriptome of the snail Ilyanassa.
    Integr Comp Biol. 2010 Nov;50(5):768-77
    pmid: 21558239
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    Cultured cambial meristematic cells as a source of plant natural products.
    Nat Biotechnol. 2010 Nov;28(11):1213-7
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    Stable, site-specific fluorescent tagging constructs optimized for burkholderia species.
    Appl Environ Microbiol. 2010 Nov;76(22):7635-40
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    Filtering of visual information in the tectum by an identified neural circuit.
    Science. 2010 Oct 29;330(6004):669-73
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    Fluorescent proteins as light-inducible photochemical partners.
    Photochem Photobiol Sci. 2010 Oct 28;9(10):1301-6
    pmid: 20672171
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    Diffusion pathways of oxygen species in the phototoxic fluorescent protein KillerRed.
    Photochem Photobiol Sci. 2010 Oct 28;9(10):1342-50
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    Simultaneous equimolar expression of multiple proteins in plants from a disarmed potyvirus vector.
    J Biotechnol. 2010 Oct 15;150(2):268-75
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    T vector bearing KillerRed protein marker for red/white cloning screening.
    Anal Biochem. 2010 Oct 15;405(2):272-4
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    Knockdown of NBCe1 in vivo compromises the corneal endothelial pump.
    Invest Ophthalmol Vis Sci. 2010 Oct;51(10):5190-7
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    Near-infrared fluorescent proteins.
    Nat Methods. 2010 Oct;7(10):827-9
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    Gilthead sea bream (Sparus auratus) and European sea bass (Dicentrarchus labrax) expressed sequence tags: Characterization, tissue-specific expression and gene markers.
    Mar Genomics. 2010 Sep-Dec;3(3-4):179-91
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    Redox state of the endoplasmic reticulum is controlled by Ero1L-alpha and intraluminal calcium.
    Antioxid Redox Signal. 2010 Sep 15;13(6):721-9
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    Aquaporin-3 mediates hydrogen peroxide uptake to regulate downstream intracellular signaling.
    Proc Natl Acad Sci U S A. 2010 Sep 7;107(36):15681-6
    pmid: 20724658
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    Mitochondria control functional CaV1.2 expression in smooth muscle cells of cerebral arteries.
    Circ Res. 2010 Sep 3;107(5):631-41
    pmid: 20616314
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    An EST-based genome scan using 454 sequencing in the marine snail Littorina saxatilis.
    J Evol Biol. 2010 Sep 1;23(9):2004-16
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    Investigation of the Transcriptome of Prairie Cord Grass, a New Cellulosic Biomass Crop.
    THE PLANT GENOME. 2010 Sep;3(2):69-80 https://www.crops.org
  • Lin LT, Noyce RS, Pham TN, Wilson JA, Sisson GR, Michalak TI, Mossman KL, Richardson CD.
    Replication of subgenomic hepatitis C virus replicons in mouse fibroblasts is facilitated by deletion of interferon regulatory factor 3 and expression of liver-specific microRNA 122.
    J Virol. 2010 Sep;84(18):9170-80
    pmid: 20592082
  • Pizzimenti S, Menegatti E, Berardi D, Toaldo C, Pettazzoni P, Minelli R, Giglioni B, Cerbone A, Dianzani MU, Ferretti C, Barrera G.
    4-Hydroxynonenal, a lipid peroxidation product of dietary polyunsaturated fatty acids, has anticarcinogenic properties in colon carcinoma cell lines through the inhibition of telomerase activity.
    J Nutr Biochem. 2010 Sep;21(9):818-26
    pmid: 19733043
  • Fantin A, Vieira JM, Gestri G, Denti L, Schwarz Q, Prykhozhij S, Peri F, Wilson SW, Ruhrberg C.
    Tissue macrophages act as cellular chaperones for vascular anastomosis downstream of VEGF-mediated endothelial tip cell induction.
    Blood. 2010 Aug 5;116(5):829-40
    pmid: 20404134
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    Astroglia are a possible cellular substrate of angiotensin(1-7) effects in the rostral ventrolateral medulla.
    Cardiovasc Res. 2010 Aug 1;87(3):578-84
    pmid: 20200044
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    S100A4 regulates macrophage chemotaxis.
    Mol Biol Cell. 2010 Aug 1;21(15):2598-610
    pmid: 20519440
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    Implementation of a 220,000-compound HCS campaign to identify disruptors of the interaction between p53 and hDM2 and characterization of the confirmed hits.
    J Biomol Screen. 2010 Aug;15(7):766-82
    pmid: 20639499
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    Characterization and optimization of a novel protein-protein interaction biosensor high-content screening assay to identify disruptors of the interactions between p53 and hDM2.
    Assay Drug Dev Technol. 2010 Aug;8(4):437-58
    pmid: 20662736
  • Izumiya M, Okamoto K, Tsuchiya N, Nakagama H.
    Functional screening using a microRNA virus library and microarrays: a new high-throughput assay to identify tumor-suppressive microRNAs.
    Carcinogenesis. 2010 Aug;31(8):1354-9
    pmid: 20525881
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    Analysis of expressed sequence tags for Frankliniella occidentalis, the western flower thrips.
    Insect Mol Biol. 2010 Aug;19(4):537-51
    pmid: 20522119
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    Construction and preliminary analysis of a normalized cDNA library from Locusta migratoria manilensis topically infected with Metarhizium anisopliae var. acridum.
    J Insect Physiol. 2010 Aug;56(8):998-1002
    pmid: 20470782
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    RNA interference reveals a requirement for both p18INK4c and p27Kip1 in B lymphopoiesis.
    J Mol Cell Biol. 2010 Aug;2(4):209-16
    pmid: 20671115
  • Gourine AV, Kasymov V, Marina N, Tang F, Figueiredo MF, Lane S, Teschemacher AG, Spyer KM, Deisseroth K, Kasparov S.
    Astrocytes control breathing through pH-dependent release of ATP.
    Science. 2010 Jul 30;329(5991):571-5
    pmid: 20647426
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    Cytohesin-2/ARNO, through its interaction with focal adhesion adaptor protein paxillin, regulates preadipocyte migration via the downstream activation of Arf6.
    J Biol Chem. 2010 Jul 30;285(31):24270-81
    pmid: 20525696
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    Imaging CREB activation in living cells.
    J Biol Chem. 2010 Jul 23;285(30):23285-95
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    From raw materials to validated system: the construction of a genomic library and microarray to interpret systemic perturbations in Northern bobwhite.
    Physiol Genomics. 2010 Jul 7;42(2):219-35
    pmid: 20406850
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    Duration and level of transgene expression after gene electrotransfer to skin in mice.
    Gene Ther. 2010 Jul;17(7):839-45
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    Transcriptional profiling of equine endometrium during the time of maternal recognition of pregnancy.
    Biol Reprod. 2010 Jul;83(1):102-13
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    Transcriptional profiling of equine endometrium during the time of maternal recognition of pregnancy.
    Biol Reprod. 2010 Jul;83(1):102-13
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  • Kohaar I, Ploss A, Korol E, Mu K, Schoggins JW, O'Brien TR, Rice CM, Prokunina-Olsson L.
    Splicing diversity of the human OCLN gene and its biological significance for hepatitis C virus entry.
    J Virol. 2010 Jul;84(14):6987-94
    pmid: 20463075
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    PALM imaging and cluster analysis of protein heterogeneity at the cell surface.
    J Biophotonics. 2010 Jul;3(7):446-54
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    Nox4-derived H2O2 mediates endoplasmic reticulum signaling through local Ras activation.
    Mol Cell Biol. 2010 Jul;30(14):3553-68
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    Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate.
    BMC Genomics. 2010 Jun 21;11:390
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    Identification of immune-relevant genes by expressed sequence tag analysis of head kidney from grass carp (Ctenopharyngodon idella).
    Comp Biochem Physiol Part D Genomics Proteomics. 2010 Jun;5(2):116-23
    pmid: 20403773
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    Normalization of genomic DNA using duplex-specific nuclease.
    Biotechniques. 2010 Jun;48(6):455-9
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    EST analysis and identification of gonad-related genes from the normalized cDNA library of large yellow croaker, Larimichthys crocea.
    Comp Biochem Physiol Part D Genomics Proteomics. 2010 Jun;5(2):89-97
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    Fluorescence lifetime endoscopy using TCSPC for the measurement of FRET in live cells.
    Opt Express. 2010 May 24;18(11):11148-58
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    Presenilin 1 mutants impair the self-renewal and differentiation of adult murine subventricular zone-neuronal progenitors via cell-autonomous mechanisms involving notch signaling.
    J Neurosci. 2010 May 19;30(20):6903-15
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    A distinct DGAT with sn-3 acetyltransferase activity that synthesizes unusual, reduced-viscosity oils in Euonymus and transgenic seeds.
    Proc Natl Acad Sci U S A. 2010 May 18;107(20):9464-9
    pmid: 20439724
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    Role of H2O2 in RET/PTC1 chromosomal rearrangement produced by ionizing radiation in human thyroid cells.
    Cancer Res. 2010 May 15;70(10):4123-32
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    Bright monomeric photoactivatable red fluorescent protein for two-color super-resolution sptPALM of live cells.
    J Am Chem Soc. 2010 May 12;132(18):6481-91
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    A high-throughput biophotonics instrument to screen for novel ocular photosensitizing therapeutic agents.
    Invest Ophthalmol Vis Sci. 2010 May;51(5):2705-20
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    A dual promoter lentiviral vector for the in vivo evaluation of gene therapeutic approaches to axon regeneration after spinal cord injury.
    Gene Ther. 2010 May;17(5):577-91
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    Entry of Neisseria meningitidis into mammalian cells requires the Src family protein tyrosine kinases.
    Infect Immun. 2010 May;78(5):1905-14
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    An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags.
    BMC Genomics. 2010 Apr 30;11:278
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    Structural characterization of acylimine-containing blue and red chromophores in mTagBFP and TagRFP fluorescent proteins.
    Chem Biol. 2010 Apr 23;17(4):333-41
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    F-actin dynamics in Neurospora crassa.
    Eukaryot Cell. 2010 Apr;9(4):547-57
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    Normalizing cDNA libraries.
    Curr Protoc Mol Biol. 2010 Apr;Chapter 5:Unit 5.12.1-27
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    The oligoclonal expansion of T cells: study of its stability over time.
    Bioorg Khim. 2010 Mar-Apr;36(2):206-14 http://www.springerlink.com
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  • Fujimoto M, Arimura S, Ueda T, Takanashi H, Hayashi Y, Nakano A, Tsutsumi N.
    Arabidopsis dynamin-related proteins DRP2B and DRP1A participate together in clathrin-coated vesicle formation during endocytosis.
    Proc Natl Acad Sci U S A. 2010 Mar 30;107(13):6094-9
    pmid: 20231465
  • Piatkevich KD, Hulit J, Subach OM, Wu B, Abdulla A, Segall JE, Verkhusha VV.
    Monomeric red fluorescent proteins with a large Stokes shift.
    Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5369-74
    pmid: 20212155
  • Zhu X, Caplan J, Mamillapalli P, Czymmek K, Dinesh-Kumar SP.
    Function of endoplasmic reticulum calcium ATPase in innate immunity-mediated programmed cell death.
    EMBO J. 2010 Mar 3;29(5):1007-18
    pmid: 20075858
  • Buggs RJ, Chamala S, Wu W, Gao L, May GD, Schnable PS, Soltis DE, Soltis PS, Barbazuk WB.
    Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.
    Mol Ecol. 2010 Mar;19 Suppl 1:132-46
    pmid: 20331776
  • Ro S, Park C, Jin J, Zheng H, Blair PJ, Redelman D, Ward SM, Yan W, Sanders KM.
    A model to study the phenotypic changes of interstitial cells of Cajal in gastrointestinal diseases.
    Gastroenterology. 2010 Mar;138(3):1068-78.e1-2
    pmid: 19917283
  • Swan LE, Tomasini L, Pirruccello M, Lunardi J, De Camilli P.
    Two closely related endocytic proteins that share a common OCRL-binding motif with APPL1.
    Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3511-6
    pmid: 20133602
  • Sadd BM, Kube M, Klages S, Reinhardt R, Schmid-Hempel P.
    Analysis of a normalised expressed sequence tag (EST) library from a key pollinator, the bumblebee Bombus terrestris.
    BMC Genomics. 2010 Feb 15;11:110
    pmid: 20156341
  • Niino Y, Hotta K, Oka K.
    Blue fluorescent cGMP sensor for multiparameter fluorescence imaging.
    PLoS One. 2010 Feb 11;5(2):e9164
    pmid: 20161796
  • Felsheim RF, Chavez AS, Palmer GH, Crosby L, Barbet AF, Kurtti TJ, Munderloh UG.
    Transformation of Anaplasma marginale.
    Vet Parasitol. 2010 Feb 10;167(2-4):167-74
    pmid: 19837516
  • Shalek AK, Robinson JT, Karp ES, Lee JS, Ahn DR, Yoon MH, Sutton A, Jorgolli M, Gertner RS, Gujral TS, MacBeath G, Yang EG, Park H.
    Vertical silicon nanowires as a universal platform for delivering biomolecules into living cells.
    Proc Natl Acad Sci U S A. 2010 Feb 2;107(5):1870-5
    pmid: 20080678
  • Krivushin KV, Shcherbakova VA, Petrovskaya LE, Rivkina EM.
    Methanobacterium veterum sp. nov., from ancient Siberian permafrost.
    Int J Syst Evol Microbiol. 2010 Feb;60(Pt 2):455-9
    pmid: 19654368
  • Pauchet Y, Wilkinson P, Vogel H, Nelson DR, Reynolds SE, Heckel DG, ffrench-Constant RH.
    Pyrosequencing the Manduca sexta larval midgut transcriptome: messages for digestion, detoxification and defence.
    Insect Mol Biol. 2010 Feb;19(1):61-75
    pmid: 19909380
  • Vogel H, Heidel AJ, Heckel DG, Groot AT.
    Transcriptome analysis of the sex pheromone gland of the noctuid moth Heliothis virescens.
    BMC Genomics. 2010 Jan 14;11:29
    pmid: 20074338
  • Suenaga T, Satoh T, Somboonthum P, Kawaguchi Y, Mori Y, Arase H.
    Myelin-associated glycoprotein mediates membrane fusion and entry of neurotropic herpesviruses.
    Proc Natl Acad Sci U S A. 2010 Jan 12;107(2):866-71
    pmid: 20080767
  • Costa A, Drago I, Behera S, Zottini M, Pizzo P, Schroeder JI, Pozzan T, Lo Schiavo F.
    H2O2 in plant peroxisomes: an in vivo analysis uncovers a Ca(2+)-dependent scavenging system.
    Plant J. 2010 Jun 1;62(5):760-72
    pmid: 20230493
  • Dang-Quan Zhang, Fu-Huan Ming, Quan-Dong Zhu, Zhi-Dan Song, Xin Han, Ping Jiang
    Establishment and Identification of Cold-Stressed Normalized Full-Length cDNA Library of Ceratoides lanata.
    Bioinformatics and Biomedical Engineering (iCBBE), 2010 4th International Conference. 2010;1-3 http://ieeexplore.ieee.org
  • EA Bogdanova, I Shagina, EV Barsova, I Kelmanson, DA Shagin, SA Lukyanov
    Normalizing cDNA Libraries.
    Current Protocols in Molecular Biology. 2010; http://www.currentprotocols.com
  • Nakamura S, Mano S, Tanaka Y, Ohnishi M, Nakamori C, Araki M, Niwa T, Nishimura M, Kaminaka H, Nakagawa T, Sato Y, Ishiguro S.
    Gateway binary vectors with the bialaphos resistance gene, bar, as a selection marker for plant transformation.
    Biosci Biotechnol Biochem. 2010;74(6):1315-9
    pmid: 20530878
  • RJA BUGGS, S CHAMALA, W WU, L GAO, GD MAY, PS SCHNABLE, DE SOLTIS, PS SOLTIS, WB BARBAZUK.
    Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.
    Molecular Ecology. 2010; http://onlinelibrary.wiley.com
  • Tsoi S, Hulce D, Manion M, Liu J, Dixon W, Foxcroft G, Dyck M.
    Transcriptome Analysis of In Vitro- and In Vivo-Produced Preimplantation Porcine Embryos by 454 Pyrosequencing.
    Biology of Reproduction. 2010;83(1_MeetingAbstracts):110 ISI:000284381300252
  • Yu JZ, Ma XL, Pan KH, Yang GP, Yu WG.
    Construction and characterization of a normalized cDNA library of Nannochloropsis oculata (Eustigmatophyceae).
    Chinese Journal of Oceanology and Limnology. 2010;28(4):802-7 ISI:000279294400013 http://www.springerlink.com
2009
  • Mello LV, O'Meara H, Rigden DJ, Paterson S.
    Identification of novel aspartic proteases from Strongyloides ratti and characterisation of their evolutionary relationships, stage-specific expression and molecular structure.
    BMC Genomics. 2009 Dec 16;10:611
    pmid: 20015380
  • Waldeck W, Mueller G, Wiessler M, Brom M, Tóth K, Braun K.
    Autofluorescent proteins as photosensitizer in eukaryontes.
    Int J Med Sci. 2009 Dec 1;6(6):365-73
    pmid: 19960122
  • Ai J, Wang Y, Dar JA, Liu J, Liu L, Nelson JB, Wang Z.
    HDAC6 Regulates Androgen Receptor Hypersensitivity and Nuclear Localization via Modulating Hsp90 Acetylation in Castration-Resistant Prostate Cancer.
    Mol Endocrinol. 2009 Dec;23(12):1963-1972
    pmid: 19855091
  • Ferguson HE, Kulkarni A, Lehmann GM, Garcia-Bates TM, Thatcher TH, Huxlin KR, Phipps RP, Sime PJ.
    Electrophilic peroxisome proliferator-activated receptor-gamma ligands have potent antifibrotic effects in human lung fibroblasts.
    Am J Respir Cell Mol Biol. 2009 Dec;41(6):722-30
    pmid: 19286977
  • Simon S, Strauss S, von Haeseler A, Hadrys H.
    A phylogenomic approach to resolve the basal pterygote divergence.
    Mol Biol Evol. 2009 Dec;26(12):2719-30
    pmid: 19713325
  • Heeroma JH, Henneberger C, Rajakulendran S, Hanna MG, Schorge S, Kullmann DM.
    Episodic ataxia type 1 mutations differentially affect neuronal excitability and transmitter release.
    Dis Model Mech. 2009 Nov-Dec;2(11-12):612-9
    pmid: 19779067
  • Costantini JL, Cheung SM, Hou S, Li H, Kung SK, Johnston JB, Wilkins JA, Gibson SB, Marshall AJ.
    TAPP2 links phosphoinositide 3-kinase signaling to B-cell adhesion through interaction with the cytoskeletal protein utrophin: expression of a novel cell adhesion-promoting complex in B-cell leukemia.
    Blood. 2009 Nov 19;114(21):4703-12
    pmid: 19786618
  • Jabbour M, Campbell EM, Fares H, Lybarger L.
    Discrete domains of MARCH1 mediate its localization, functional interactions, and posttranscriptional control of expression.
    J Immunol. 2009 Nov 15;183(10):6500-12
    pmid: 19880452
  • Pletnev S, Gurskaya NG, Pletneva NV, Lukyanov KA, Chudakov DM, Martynov VI, Popov VO, Kovalchuk MV, Wlodawer A, Dauter Z, Pletnev V.
    Structural basis for phototoxicity of the genetically encoded photosensitizer KillerRed.
    J Biol Chem. 2009 Nov 13;284(46):32028-39
    pmid: 19737938
  • Doebele RC, Schulze-Hoepfner FT, Hong J, Chlenski A, Zeitlin BD, Goel K, Gomes S, Liu Y, Abe MK, Nor JE, Lingen MW, Rosner MR.
    A novel interplay between Epac/Rap1 and mitogen-activated protein kinase kinase 5/extracellular signal-regulated kinase 5 (MEK5/ERK5) regulates thrombospondin to control angiogenesis.
    Blood. 2009 Nov 12;114(20):4592-600
    pmid: 19710505
  • Birol I, Jackman SD, Nielsen C, Qian JQ, Varhol R, Stazyk G, Morin RD, Zhao Y, Hirst M, Schein JE, Horsman DE, Connors JM, Gascoyne RD, Marra MA, Jones SJ.
    De novo Transcriptome Assembly with ABySS.
    Bioinformatics. 2009 Nov 1;25(21):2872-7
    pmid: 19528083
  • Froscio SM, Cannon E, Lau HM, Humpage AR.
    Limited uptake of the cyanobacterial toxin cylindrospermopsin by Vero cells.
    Toxicon. 2009 Nov;54(6):862-8
    pmid: 19559040
  • Ungvari Z, Labinskyy N, Mukhopadhyay P, Pinto JT, Bagi Z, Ballabh P, Zhang C, Pacher P, Csiszar A.
    Resveratrol attenuates mitochondrial oxidative stress in coronary arterial endothelial cells.
    Am J Physiol Heart Circ Physiol. 2009 Nov;297(5):H1876-81
    pmid: 19749157
  • Wang J, Kondo N, Long Y, Iwamoto A, Matsuda Z.
    Monitoring of HIV-1 envelope-mediated membrane fusion using modified split green fluorescent proteins.
    J Virol Methods. 2009 Nov;161(2):216-22
    pmid: 19559731
  • Ziera T, Irlbacher H, Fromm A, Latouche C, Krug SM, Fromm M, Jaisser F, Borden SA.
    Cnksr3 is a direct mineralocorticoid receptor target gene and plays a key role in the regulation of the epithelial sodium channel.
    FASEB J. 2009 Nov;23(11):3936-46
    pmid: 19567370
  • Kijimoto T, Costello J, Tang Z, Moczek AP, Andrews J.
    EST and microarray analysis of horn development in Onthophagus beetles.
    BMC Genomics. 2009 Oct 30;10:504
    pmid: 19878565
  • Schetelig MF, Scolari F, Handler AM, Kittelmann S, Gasperi G, Wimmer EA.
    Site-specific recombination for the modification of transgenic strains of the Mediterranean fruit fly Ceratitis capitata.
    Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18171-6
    pmid: 19828439
  • Yan D, Dong Xda E, Chen X, Wang L, Lu C, Wang J, Qu J, Tu L.
    MicroRNA-1/206 targets c-Met and inhibits rhabdomyosarcoma development.
    J Biol Chem. 2009 Oct 23;284(43):29596-604
    pmid: 19710019
  • Liu X, Weaver D, Shirihai O, Hajnóczky G.
    Mitochondrial 'kiss-and-run': interplay between mitochondrial motility and fusion-fission dynamics.
    EMBO J. 2009 Oct 21;28(20):3074-89
    pmid: 19745815
  • Arrenberg AB, Del Bene F, Baier H.
    Optical control of zebrafish behavior with halorhodopsin.
    Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17968-73
    pmid: 19805086
  • Mawe GM.
    Interstitial cells of Cajal in the gut: what makes them tick?
    J Physiol. 2009 Oct 15;587(Pt 20):4765
    pmid: 19828522
  • Tartar A, Wheeler MM, Zhou X, Coy MR, Boucias DG, Scharf ME.
    Parallel metatranscriptome analyses of host and symbiont gene expression in the gut of the termite Reticulitermes flavipes.
    Biotechnol Biofuels. 2009 Oct 15;2:25
    pmid: 19832970
  • Zhu MH, Kim TW, Ro S, Yan W, Ward SM, Koh SD, Sanders KM.
    A Ca(2+)-activated Cl(-) conductance in interstitial cells of Cajal linked to slow wave currents and pacemaker activity.
    J Physiol. 2009 Oct 15;587(Pt 20):4905-18
    pmid: 19703958
  • Jin BY, Sartoretto JL, Gladyshev VN, Michel T.
    Endothelial nitric oxide synthase negatively regulates hydrogen peroxide-stimulated AMP-activated protein kinase in endothelial cells.
    Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17343-8
    pmid: 19805165
  • Chakraborty C, Hsu CH, Wen ZH, Lin CS.
    Recent Advances of Fluorescent Technologies for Drug Discovery and Development.
    Current Pharmaceutical Design. 2009 Oct;15(30):3552-70(19) http://www.ingentaconnect.com
  • Flynn KC, Pak CW, Shaw AE, Bradke F, Bamburg JR.
    Growth cone-like waves transport actin and promote axonogenesis and neurite branching.
    Dev Neurobiol. 2009 Oct;69(12):761-79
    pmid: 19513994
  • Kulesa PM, Stark DA, Steen J, Lansford R, Kasemeier-Kulesa JC.
    Watching the assembly of an organ a single cell at a time using confocal multi-position photoactivation and multi-time acquisition.
    Organogenesis. 2009 Oct;5(4):238-47
    pmid: 20539744
  • Suo G, Jiang Y, Cowan B, Wang JY.
    Platelet-derived growth factor C is upregulated in human uterine fibroids and regulates uterine smooth muscle cell growth.
    Biol Reprod. 2009 Oct;81(4):749-58
    pmid: 19553600
  • Endo R, Saito T, Asada A, Kawahara H, Ohshima T, Hisanaga S.
    Commitment of 1-methyl-4-phenylpyrinidinium ion-induced neuronal cell death by proteasome-mediated degradation of p35 cyclin-dependent kinase 5 activator.
    J Biol Chem. 2009 Sep 18;284(38):26029-39
    pmid: 19638632
  • Chu J, Zhang Z, Zheng Y, Yang J, Qin L, Lu J, Huang ZL, Zeng S, Luo Q.
    A novel far-red bimolecular fluorescence complementation system that allows for efficient visualization of protein interactions under physiological conditions.
    Biosens Bioelectron. 2009 Sep 15;25(1):234-9
    pmid: 19596565
  • Wang Y, Hanifi-Moghaddam P, Hanekamp EE, Kloosterboer HJ, Franken P, Veldscholte J, van Doorn HC, Ewing PC, Kim JJ, Grootegoed JA, Burger CW, Fodde R, Blok LJ.
    Progesterone inhibition of Wnt/β-catenin signaling in normal endometrium and endometrial cancer.
    Clin Cancer Res. 2009 Sep 15;15(18):5784-93
    pmid: 19737954
  • Zou L, Zhou J, Zhang J, Li J, Liu N, Chai L, Li N, Liu T, Li L, Xie Z, Liu H, Wan Y, Wu Y.
    The GTPase Rab3b/3c-positive recycling vesicles are involved in cross-presentation in dendritic cells.
    Proc Natl Acad Sci U S A. 2009 Sep 15;106(37):15801-6
    pmid: 19717423
  • Marques MC, Alonso-Cantabrana H, Forment J, Arribas R, Alamar S, Conejero V, Perez-Amador MA.
    A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus.
    BMC Genomics. 2009 Sep 11;10:428
    pmid: 19747386
  • Nowotschin S, Hadjantonakis AK.
    Use of KikGR a photoconvertible green-to-red fluorescent protein for cell labeling and lineage analysis in ES cells and mouse embryos.
    BMC Dev Biol. 2009 Sep 9;9:49
    pmid: 19740427
  • Carpentier P, Violot S, Blanchoin L, Bourgeois D.
    Structural basis for the phototoxicity of the fluorescent protein KillerRed.
    FEBS Lett. 2009 Sep 3;583(17):2839-42
    pmid: 19646983
  • Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW.
    Whole genome amplification and de novo assembly of single bacterial cells.
    PLoS One. 2009 Sep 2;4(9):e6864
    pmid: 19724646
  • Marshall TW, Aloor HL, Bear JE.
    Coronin 2A regulates a subset of focal-adhesion-turnover events through the cofilin pathway.
    J Cell Sci. 2009 Sep 1;122(Pt 17):3061-9
    pmid: 19654210
  • Gorbushin AM, Klimovich AV, Iakovleva NV.
    Himasthla elongata: effect of infection on expression of the LUSTR-like receptor mRNA in common periwinkle haemocytes.
    Exp Parasitol. 2009 Sep;123(1):24-30
    pmid: 19460375
  • Mamedov IZ, Britanova OV, Chkalina AV, Staroverov DB, Amosova AL, Mishin AS, Kurnikova MA, Zvyagin IV, Mutovina ZY, Gordeev AV, Khaidukov SV, Sharonov GV, Shagin DA, Chudakov DM, Lebedev YB.
    Individual characterization of stably expanded T cell clones in ankylosing spondylitis patients.
    Autoimmunity. 2009 Sep;42(6):525-36
    pmid: 19657773
  • Wang P, Chen Z, Meng ZQ, Fan J, Luo JM, Liang W, Lin JH, Zhou ZH, Chen H, Wang K, Shen YH, Xu ZD, Liu LM.
    Dual role of Ski in pancreatic cancer cells: tumor-promoting versus metastasis-suppressive function.
    Carcinogenesis. 2009 Sep;30(9):1497-506
    pmid: 19546161
  • Yip L, Su L, Sheng D, Chang P, Atkinson M, Czesak M, Albert PR, Collier AR, Turley SJ, Fathman CG, Creusot RJ.
    Deaf1 isoforms control the expression of genes encoding peripheral tissue antigens in the pancreatic lymph nodes during type 1 diabetes.
    Nat Immunol. 2009 Sep;10(9):1026-33
    pmid: 19668219
  • Oser M, Yamaguchi H, Mader CC, Bravo-Cordero JJ, Arias M, Chen X, Desmarais V, van Rheenen J, Koleske AJ, Condeelis J.
    Cortactin regulates cofilin and N-WASp activities to control the stages of invadopodium assembly and maturation.
    J Cell Biol. 2009 Aug 24;186(4):571-87
    pmid: 19704022
  • Naesby M, Nielsen SV, Nielsen CA, Green T, Tange TO, Simon E, Knechtle P, Hansson A, Schwab MS, Titiz O, Folly C, Archila RE, Maver M, van Sint Fiet S, Boussemghoune T, Janes M, Kumar AS, Sonkar SP, Mitra PP, Benjamin VA, Korrapati N, Suman I, Hansen EH, Thybo T, Goldsmith N, Sorensen AS.
    Yeast artificial chromosomes employed for random assembly of biosynthetic pathways and production of diverse compounds in Saccharomyces cerevisiae.
    Microb Cell Fact. 2009 Aug 13;8:45
    pmid: 19678954
  • Zhao Y, Sfeir AJ, Zou Y, Buseman CM, Chow TT, Shay JW, Wright WE.
    Telomere extension occurs at most chromosome ends and is uncoupled from fill-in in human cancer cells.
    Cell. 2009 Aug 7;138(3):463-75
    pmid: 19665970
  • Wall PK, Leebens-Mack J, Chanderbali AS, Barakat A, Wolcott E, Liang H, Landherr L, Tomsho LP, Hu Y, Carlson JE, Ma H, Schuster SC, Soltis DE, Soltis PS, Altman N, dePamphilis CW.
    Comparison of next generation sequencing technologies for transcriptome characterization.
    BMC Genomics. 2009 Aug 1;10:347
    pmid: 19646272
  • Gao Q, Nie P, Thompson KD, Adams A, Wang T, Secombes CJ, Zou J.
    The search for the IFN-gamma receptor in fish: Functional and expression analysis of putative binding and signalling chains in rainbow trout Oncorhynchus mykiss.
    Dev Comp Immunol. 2009 Aug;33(8):920-31
    pmid: 19454334
  • Nikapitiya C, De Zoysa M, Whang I, Kim CG, Lee YH, Kim SJ, Lee J.
    Molecular cloning, characterization and expression analysis of peroxiredoxin 6 from disk abalone Haliotis discus discus and the antioxidant activity of its recombinant protein.
    Fish Shellfish Immunol. 2009 Aug;27(2):239-49
    pmid: 19460442
  • Sun Z, Juriani A, Meininger GA, Meissner KE.
    Probing cell surface interactions using atomic force microscope cantilevers functionalized for quantum dot-enabled Forster resonance energy transfer.
    J Biomed Opt. 2009 Jul-Aug;14(4):040502
    pmid: 19725707
  • Fleury E, Huvet A, Lelong C, de Lorgeril J, Boulo V, Gueguen Y, Bachere E, Tanguy A, Moraga D, Fabioux C, Lindeque P, Shaw J, Reinhardt R, Prunet P, Davey G, Lapegue S, Sauvage C, Corporeau C, Moal J, Gavory F, Wincker P, Moreews F, Klopp C, Mathieu M, Boudry P, Favrel P.
    Generation and analysis of a 29,745 unique Expressed Sequence Tags from the Pacific oyster (Crassostrea gigas) assembled into a publicly accessible database: the GigasDatabase.
    BMC Genomics. 2009 Jul 29;10:341
    pmid: 19640306
  • Wang X, Su B, Lee HG, Li X, Perry G, Smith MA, Zhu X.
    Impaired balance of mitochondrial fission and fusion in Alzheimer's disease.
    J Neurosci. 2009 Jul 15;29(28):9090-103.
    pmid: 19605646
  • Yamauchi J, Miyamoto Y, Torii T, Mizutani R, Nakamura K, Sanbe A, Koide H, Kusakawa S, Tanoue A.
    Valproic acid-inducible Arl4D and cytohesin-2/ARNO, acting through the downstream Arf6, regulate neurite outgrowth in N1E-115 cells.
    Exp Cell Res. 2009 Jul 15;315(12):2043-52
    pmid: 19327349
  • Zakharova MY, Kuznetsov NA, Dubiley SA, Kozyr AV, Fedorova OS, Chudakov DM, Knorre DG, Shemyakin IG, Gabibov AG, Kolesnikov AV.
    Substrate recognition of anthrax lethal factor examined by combinatorial and pre-steady-state kinetic approaches.
    J Biol Chem. 2009 Jul 3;284(27):17902-13
    pmid: 19359249
  • Hynes J, O'Riordan TC, Zhdanov AV, Uray G, Will Y, Papkovsky DB.
    In vitro analysis of cell metabolism using a long-decay pH-sensitive lanthanide probe and extracellular acidification assay.
    Anal Biochem. 2009 Jul 1;390(1):21-8
    pmid: 19379702
  • Falk MM, Baker SM, Gumpert AM, Segretain D, Buckheit RW 3rd.
    Gap junction turnover is achieved by the internalization of small endocytic double-membrane vesicles.
    Mol Biol Cell. 2009 Jul;20(14):3342-52
    pmid: 19458184
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    Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta.
    Plant J. 2009 Jul;59(1):150-62
    pmid: 19309457
  • Jagasia R, Steib K, Englberger E, Herold S, Faus-Kessler T, Saxe M, Gage FH, Song H, Lie DC.
    GABA-cAMP response element-binding protein signaling regulates maturation and survival of newly generated neurons in the adult hippocampus.
    J Neurosci. 2009 Jun 24;29(25):7966-77
    pmid: 19553437
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    Neuroscience. Bridging the gap and staying local.
    Science. 2009 Jun 19;324(5934):1527-8.
    pmid: 19541987
  • Wang DO, Kim SM, Zhao Y, Hwang H, Miura SK, Sossin WS, Martin KC.
    Synapse- and stimulus-specific local translation during long-term neuronal plasticity.
    Science. 2009 Jun 19;324(5934):1536-40
    pmid: 19443737
  • Jiang Q, Feng MG, Mo YY.
    Systematic validation of predicted microRNAs for cyclin D1.
    BMC Cancer. 2009 Jun 18;9:194
    pmid: 19538740
  • Niethammer P, Grabher C, Look AT, Mitchison TJ.
    A tissue-scale gradient of hydrogen peroxide mediates rapid wound detection in zebrafish.
    Nature. 2009 Jun 18;459(7249):996-9
    pmid: 19494811
  • Dong B, Horie T, Denker E, Kusakabe T, Tsuda M, Smith WC, Jiang D.
    Tube formation by complex cellular processes in Ciona intestinalis notochord.
    Dev Biol. 2009 Jun 15;330(2):237-49
    pmid: 19324030
  • Zhou B, Dong Q, Ma R, Chen Y, Yang J, Sun LZ, Huang C.
    Rapid isolation of highly pure single-stranded DNA from phagemids.
    Anal Biochem. 2009 Jun 15;389(2):177-9
    pmid: 19348781
  • Oswald C, Krause-Buchholz U, Rodel G.
    Knockdown of human COX17 affects assembly and supramolecular organization of cytochrome c oxidase.
    J Mol Biol. 2009 Jun 12;389(3):470-9
    pmid: 19393246
  • Tang S, Okashah RA, Cordonnier-Pratt MM, Pratt LH, Ed Johnson V, Taylor CA, Arnold ML, Knapp SJ.
    EST and EST-SSR marker resources for Iris.
    BMC Plant Biol. 2009 Jun 10;9:72
    pmid: 19515254
  • Adam V, Nienhaus K, Bourgeois D, Nienhaus GU.
    Structural basis of enhanced photoconversion yield in green fluorescent protein-like protein Dendra2.
    Biochemistry. 2009 Jun 9;48(22):4905-15
    pmid: 19371086
  • Anderson DD, Stover PJ.
    SHMT1 and SHMT2 are functionally redundant in nuclear De novo thymidylate biosynthesis.
    PLoS One. 2009 Jun 9;4(6):e5839
    pmid: 19513116
  • Bohnacker T, Marone R, Collmann E, Calvez R, Hirsch E, Wymann MP.
    PI3Kgamma adaptor subunits define coupling to degranulation and cell motility by distinct PtdIns(3,4,5)P3 pools in mast cells.
    Sci Signal. 2009 Jun 9;2(74):ra27
    pmid: 19509406
  • Kural C, Nonet ML, Selvin PR.
    FIONA on Caenorhabditis elegans.
    Biochemistry. 2009 Jun 9;48(22):4663-5
    pmid: 19397310
  • Serebrovskaya EO, Edelweiss EF, Stremovskiy OA, Lukyanov KA, Chudakov DM, Deyev SM.
    Targeting cancer cells by using an antireceptor antibody-photosensitizer fusion protein.
    Proc Natl Acad Sci U S A. 2009 Jun 9;106(23):9221-5
    pmid: 19458251
  • Gligorijevic B, Kedrin D, Segall JE, Condeelis J, van Rheenen J.
    Dendra2 photoswitching through the Mammary Imaging Window.
    J Vis Exp. 2009 Jun 5;(28)
    pmid: 19578330
  • Blow N.
    In vivo molecular imaging: the inside job.
    Nat Methods. 2009 Jun;6(6):465-9
    pmid: 19478802
  • Gogvadze E, Stukacheva E, Buzdin A, Sverdlov E.
    Human-specific modulation of transcriptional activity provided by endogenous retroviral insertions.
    J Virol. 2009 Jun;83(12):6098-105
    pmid: 19339349
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    Selective plane illumination microscopy techniques in developmental biology.
    Development. 2009 Jun;136(12):1963-75
    pmid: 19465594
  • Sharbel TF, Voigt ML, Corral JM, Thiel T, Varshney A, Kumlehn J, Vogel H, Rotter B.
    Molecular signatures of apomictic and sexual ovules in the Boechera holboellii complex.
    Plant J. 2009 Jun;58(5):870-82
    pmid: 19220792
  • Suto K, Masuda H, Takenaka Y, Tsuji FI, Mizuno H.
    Structural basis for red-shifted emission of a GFP-like protein from the marine copepod Chiridius poppei.
    Genes Cells. 2009 Jun;14(6):727-37
    pmid: 19469881
  • Tachibana A, Tohiguchi K, Ueno T, Setogawa Y, Harada A, Tanabe T.
    Preparation of long sticky ends for universal ligation-independent cloning: sequential T4 DNA polymerase treatments.
    J Biosci Bioeng. 2009 Jun;107(6):668-9
    pmid: 19447347
  • Vander Heyden AB, Naismith TV, Snapp EL, Hodzic D, Hanson PI.
    inA to the nuclear envelope revealing an activity that is impaired by the DYT1 dystonia mutation.
    Mol Biol Cell. 2009 Jun;20(11):2661-72
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    Pyrosequencing of the midgut transcriptome of the poplar leaf beetle Chrysomela tremulae reveals new gene families in Coleoptera.
    Insect Biochem Mol Biol. 2009 May-Jun;39(5-6):403-13
    pmid: 19364528
  • Sun W, Li Y, Chen L, Chen H, You F, Zhou X, Zhou Y, Zhai Z, Chen D, Jiang Z.
    ERIS, an endoplasmic reticulum IFN stimulator, activates innate immune signaling through dimerization.
    Proc Natl Acad Sci U S A. 2009 May 26;106(21):8653-8
    pmid: 19433799
  • Lamm N, Ordan E, Shponkin R, Richler C, Aker M, Tzfati Y.
    Diminished telomeric 3' overhangs are associated with telomere dysfunction in Hoyeraal-Hreidarsson syndrome.
    PLoS One. 2009 May 22;4(5):e5666
    pmid: 19461895
  • Bulankina AV, Deggerich A, Wenzel D, Mutenda K, Wittmann JG, Rudolph MG, Burger KN, Honing S.
    TIP47 functions in the biogenesis of lipid droplets.
    J Cell Biol. 2009 May 18;185(4):641-55
    pmid: 19451273
  • Kobrinsky E, Abrahimi P, Duong SQ, Thomas S, Harry JB, Patel C, Lao QZ, Soldatov NM.
    Effect of Ca(v)beta subunits on structural organization of Ca(v)1.2 calcium channels.
    PLoS ONE. 2009 May 18;4(5):e5587
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  • Meyer E, Aglyamova GV, Wang S, Buchanan-Carter J, Abrego D, Colbourne JK, Willis BL, Matz MV.
    Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx.
    BMC Genomics. 2009 May 12;10:219
    pmid: 19435504
  • Schmitz R, Hansmann ML, Bohle V, Martin-Subero JI, Hartmann S, Mechtersheimer G, Klapper W, Vater I, Giefing M, Gesk S, Stanelle J, Siebert R, Kuppers R.
    TNFAIP3 (A20) is a tumor suppressor gene in Hodgkin lymphoma and primary mediastinal B cell lymphoma.
    J Exp Med. 2009 May 11;206(5):981-9
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  • Shu X, Royant A, Lin MZ, Aguilera TA, Lev-Ram V, Steinbach PA, Tsien RY.
    Mammalian expression of infrared fluorescent proteins engineered from a bacterial phytochrome.
    Science. 2009 May 8;324(5928):804-7
    pmid: 19423828
  • Sugino H, Ozaki K, Shirasaki Y, Arakawa T, Shoji S, Funatsu T.
    On-chip microfluidic sorting with fluorescence spectrum detection and multiway separation.
    Lab Chip. 2009 May 7;9(9):1254-60
    pmid: 19370245
  • Makio T, Stanton LH, Lin CC, Goldfarb DS, Weis K, Wozniak RW.
    The nucleoporins Nup170p and Nup157p are essential for nuclear pore complex assembly.
    J Cell Biol. 2009 May 4;185(3):459-73.
    pmid: 19414608
  • Onischenko E, Stanton LH, Madrid AS, Kieselbach T, Weis K.
    Role of the Ndc1 interaction network in yeast nuclear pore complex assembly and maintenance.
    J Cell Biol. 2009 May 4;185(3):475-91
    pmid: 19414609
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    Piecing together nuclear pore complex assembly during interphase.
    J Cell Biol. 2009 May 4;185(3):377-9.
    pmid: 19414605
  • Vanlandingham PA, Ceresa BP.
    Rab7 regulates late endocytic trafficking downstream of multivesicular body biogenesis and cargo sequestration.
    J Biol Chem. 2009 May 1;284(18):12110-24
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  • Walker JC, Harland RM.
    microRNA-24a is required to repress apoptosis in the developing neural retina.
    Genes Dev. 2009 May 1;23(9):1046-51
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    Genetic variation in Ural populations of the rare plant species Adenophora lilifolia (L.) DC. on the basis of analysis of polymorphism of ISSR markers.
    Genetika. 2009 May;45(5):652-5 http://www.springerlink.com
    pmid: 19534424
  • Nowotschin S, Eakin GS, Hadjantonakis AK.
    Live-imaging fluorescent proteins in mouse embryos: multi-dimensional, multi-spectral perspectives.
    Trends Biotechnol. 2009 May;27(5):266-76
    pmid: 19339068
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    Universal and rapid method for purification of GFP-like proteins by the ethanol extraction.
    Protein Expr Purif. 2009 May;65(1):108-13
    pmid: 19084068
  • Bai X, Adams BJ, Ciche TA, Clifton S, Gaugler R, Hogenhout SA, Spieth J, Sternberg PW, Wilson RK, Grewal PS.
    Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1.
    BMC Genomics. 2009 Apr 30;10:205
    pmid: 19405965
  • Hollis ER 2nd, Jamshidi P, Low K, Blesch A, Tuszynski MH.
    Induction of corticospinal regeneration by lentiviral trkB-induced Erk activation.
    Proc Natl Acad Sci U S A. 2009 Apr 28;106(17):7215-20
    pmid: 19359495
  • Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G.
    A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.
    BMC Genomics. 2009 Apr 20;10:163
    pmid: 19379481
  • Hojman P, Eriksen J, Gehl J.
    In Vivo Imaging of Far-red Fluorescent Proteins after DNA Electrotransfer to Muscle Tissue.
    Biol Proced Online. 2009 Apr 10;11:253-62
    pmid: 19495913
  • Cai CQ, Doyon Y, Ainley WM, Miller JC, Dekelver RC, Moehle EA, Rock JM, Lee YL, Garrison R, Schulenberg L, Blue R, Worden A, Baker L, Faraji F, Zhang L, Holmes MC, Rebar EJ, Collingwood TN, Rubin-Wilson B, Gregory PD, Urnov FD, Petolino JF.
    Targeted transgene integration in plant cells using designed zinc finger nucleases.
    Plant Mol Biol. 2009 Apr;69(6):699-709
    pmid: 19112554
  • Nekrasov AN, Petrovskaya LE, Toporova VA, Kryukova EA, Rodina AV, Moskaleva EY, Kirpichnikov MP.
    Design of a novel interleukin-13 antagonist from analysis of informational structure.
    Biochemistry (Mosc). 2009 Apr;74(4):399-405 http://www.springerlink.com
    pmid: 19463093
  • Raymond JA, Janech MG.
    Ice-binding proteins from enoki and shiitake mushrooms.
    Cryobiology. 2009 Apr;58(2):151-6
    pmid: 19121299
  • Treiber N, Peters T, Sindrilaru A, Huber R, Kohn M, Menke A, Briviba K, Kreppel F, Basu A, Maity P, Koller M, Iben S, Wlaschek M, Kochanek S, Scharffetter-Kochanek K.
    Overexpression of manganese superoxide dismutase in human dermal fibroblasts enhances the contraction of free floating collagen lattice: implications for ageing and hyperplastic scar formation.
    Arch Dermatol Res. 2009 Apr;301(4):273-87
    pmid: 19306099
  • Whetten RW, Sofia VA, Frampton J.
    Polymerase chain reaction preparation of template for massively parallel pyrosequencing.
    J Biomol Tech. 2009 Apr;20(2):128-34
    pmid: 19503624
  • Danilevich VN, Barinova ES, Grishin EV.
    Microparticles from coupled DNA formed in the process of polymerase chain reaction.
    Bioorg Khim. 2009 Mar-Apr;35(2):226-38 http://www.springerlink.com
    pmid: 19537174
  • Shcherbo D, Souslova EA, Goedhart J, Chepurnykh TV, Gaintzeva A, Shemiakina II, Gadella TW, Lukyanov S, Chudakov DM.
    Practical and reliable FRET/FLIM pair of fluorescent proteins.
    BMC Biotechnol. 2009 Mar 25;9:24
    pmid: 19321010
  • Yue GH, Zhu ZY, Wang CM, Xia JH.
    A simple and efficient method for isolating polymorphic microsatellites from cDNA.
    BMC Genomics. 2009 Mar 25;10:125
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  • Saleh A, Shan L, Halayko AJ, Kung S, Gounni AS.
    Critical role for STAT3 in IL-17A-mediated CCL11 expression in human airway smooth muscle cells.
    J Immunol. 2009 Mar 15;182(6):3357-65
    pmid: 19265112
  • Shcherbo D, Murphy CS, Ermakova GV, Solovieva EA, Chepurnykh TV, Shcheglov AS, Verkhusha VV, Pletnev VZ, Hazelwood KL, Roche PM, Lukyanov S, Zaraisky AG, Davidson MW, Chudakov DM.
    Far-red fluorescent tags for protein imaging in living tissues.
    Biochem J. 2009 Mar 15;418(3):567-74
    pmid: 19143658
  • Denekamp NY, Thorne MA, Clark MS, Kube M, Reinhardt R, Lubzens E.
    Discovering genes associated with dormancy in the monogonont rotifer Brachionus plicatilis.
    BMC Genomics. 2009 Mar 13;10:108
    pmid: 19284654
  • Blow N.
    Transcriptomics: The digital generation.
    Nature. 2009 Mar 12;458(7235):239-42
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  • al-Haj L, Al-Ahmadi W, Al-Saif M, Demirkaya O, Khabar KS.
    Cloning-free regulated monitoring of reporter and gene expression.
    BMC Mol Biol. 2009 Mar 8;10:20
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  • Weisova P, Concannon CG, Devocelle M, Prehn JH, Ward MW.
    Regulation of glucose transporter 3 surface expression by the AMP-activated protein kinase mediates tolerance to glutamate excitation in neurons.
    J Neurosci. 2009 Mar 4;29(9):2997-3008
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  • Sachdeva M, Zhu S, Wu F, Wu H, Walia V, Kumar S, Elble R, Watabe K, Mo YY.
    p53 represses c-Myc through induction of the tumor suppressor miR-145.
    Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3207-12
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  • Wu F, Zhu S, Ding Y, Beck WT, Mo YY.
    MicroRNA-mediated regulation of Ubc9 expression in cancer cells.
    Clin Cancer Res. 2009 Mar 1;15(5):1550-7
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    DSN depletion is a simple method to remove selected transcripts from cDNA populations.
    Mol Biotechnol. 2009 Mar;41((3)):247-53
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  • Nikapitiya C, Oh C, Whang I, Kim CG, Lee YH, Kim SJ, Lee J.
    Molecular characterization, gene expression analysis and biochemical properties of α-amylase from the disk abalone, Haliotis discus discus.
    Comp Biochem Physiol B Biochem Mol Biol. 2009 Mar;152(3):271-81
    pmid: 19135166
  • Shibata T, Tanaka T, Shimizu K, Hayakawa S, Kuroda K.
    Immunofluorescence imaging of the influenza virus M1 protein is dependent on the fixation method.
    J Virol Methods. 2009 Mar;156(1-2):162-5
    pmid: 19027795
  • Zhang Z, Zeng B, Zhang Z, Jiao G, Li H, Jing Z, Ouyang J, Yuan X, Chai L, Che Y, Zhang Y, Yang R.
    Suppressor of cytokine signaling 3 promotes bone marrow cells to differentiate into CD8+ T lymphocytes in lung tissue via up-regulating Notch1 expression.
    Cancer Res. 2009 Feb 15;69(4):1578-86
    pmid: 19190337
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    Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line.
    Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1886-91
    pmid: 19181860
  • Shah SN, Eckert KA.
    Human postmeiotic segregation 2 exhibits biased repair at tetranucleotide microsatellite sequences.
    Cancer Res. 2009 Feb 1;69(3):1143-9
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  • Antony B, Fujii T, Moto K, Matsumoto S, Fukuzawa M, Nakano R, Tatsuki S, Ishikawa Y.
    Pheromone-gland-specific fatty-acyl reductase in the adzuki bean borer, Ostrinia scapulalis (Lepidoptera: Crambidae).
    Insect Biochem Mol Biol. 2009 Feb;39(2):90-5
    pmid: 19041942
  • Chi YH, Salzman RA, Balfe S, Ahn JE, Sun W, Moon J, Yun DJ, Lee SY, Higgins TJ, Pittendrigh B, Murdock LL, Zhu-Salzman K.
    Cowpea bruchid midgut transcriptome response to a soybean cystatin--costs and benefits of counter-defence.
    Insect Mol Biol. 2009 Feb;18(1):97-110
    pmid: 19196350
  • Cvackova Z, Masata M, Stanek D, Fidlerova H, Raska I.
    Chromatin position in human HepG2 cells: although being non-random, significantly changed in daughter cells.
    J Struct Biol. 2009 Feb;165(2):107-17
    pmid: 19056497
  • Furnes C, Seppola M, Robertsen B.
    Molecular characterisation and expression analysis of interferon gamma in Atlantic cod (Gadus morhua).
    Fish Shellfish Immunol. 2009 Feb;26(2):285-92
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  • He M, Xia Y.
    Construction and analysis of a normalized cDNA library from Metarhizium anisopliae var. acridum germinating and differentiating on Locusta migratoria wings.
    FEMS Microbiol Lett. 2009 Feb;291(1):127-35
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  • Patot S, Lepetit D, Charif D, Varaldi J, Fleury F.
    Molecular detection, penetrance, and transmission of an inherited virus responsible for behavioral manipulation of an insect parasitoid.
    Appl Environ Microbiol. 2009 Feb;75(3):703-10
    pmid: 19060167
  • Borovikova EA, Makhrov AA.
    Detection of the mitochondrial DNA haplotype characteristic of the least cisco (Coregonus sardinella, Valenciennes, 1848) in the vendace (C. albula, Linnaeus, 1758) population of Vodlozero (the Baltic Sea basin).
    Izv Akad Nauk Ser Biol. 2009 Jan-Feb;(1):95-9 http://www.springerlink.com
    pmid: 19239118
  • Drobizhev M, Tillo S, Makarov NS, Hughes TE, Rebane A.
    Absolute two-photon absorption spectra and two-photon brightness of orange and red fluorescent proteins.
    J Phys Chem B. 2009 Jan 29;113(4):855-9
    pmid: 19127988
  • Espinosa A, Garcia A, Hartel S, Hidalgo C, Jaimovich E.
    NADPH oxidase and hydrogen peroxide mediate insulin-induced calcium increase in skeletal muscle cells.
    J Biol Chem. 2009 Jan 23;284(4):2568-75
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  • Pauchet Y, Freitak D, Heidel-Fischer HM, Heckel DG, Vogel H.
    Immunity or digestion: glucanase activity in a glucan-binding protein family from Lepidoptera.
    J Biol Chem. 2009 Jan 23;284(4):2214-24
    pmid: 19033442
  • Kawashima T, Okuno H, Nonaka M, Adachi-Morishima A, Kyo N, Okamura M, Takemoto-Kimura S, Worley PF, Bito H.
    Synaptic activity-responsive element in the Arc/Arg3.1 promoter essential for synapse-to-nucleus signaling in activated neurons.
    Proc Natl Acad Sci U S A. 2009 Jan 6;106(1):316-21
    pmid: 19116276
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    ABCB8 mediates doxorubicin resistance in melanoma cells by protecting the mitochondrial genome.
    Mol Cancer Res. 2009 Jan;7(1):79-87
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    Identification of G protein alpha subunit-palmitoylating enzyme.
    Mol Cell Biol. 2009 Jan;29(2):435-47
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    Getting to the Scene.
    Sci Signal. 2009;2(76):ec209 http://stke.sciencemag.org
  • Amsen EM, Rotin D.
    Technical Note: The Use of RNA-interference as a Tool to Find Proteins Involved in Melanosome Formation or Transport.
    Mol Cell Biol. 2009; http://precedings.nature.com
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    Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales.
    Gen Biol Evol. 2009;2009:391-9
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    Prospects for Locating Adaptive Genes in Lepidopteran Genomes: A Case Study of Butterfly Color Patterns.
    In: Molecular Biology and Genetics of the Lepidoptera. Marian R. Goldsmith, Frantisek Marec (eds). ISBN: 978-1-4200-6014-0. 2009; http://books.google.com
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    Exon-intron structure of the LY6G6D gene.
    Mol Biol (Mosk). 2009;43(4):590-8 http://www.springerlink.com
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    Strategies for undertaking expressed sequence tag (EST) projects.
    Methods Mol Biol. 2009;533:13-32
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    Applications of Ultra-high-Throughput Sequencing.
    Methods Mol Biol. 2009;553:79-108
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    Exploration of fluorescent protein voltage probes based on circularly permuted fluorescent proteins.
    Front Neuroengineering. 2009;2:14
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  • Goedhart J, Gadella TWJ Jr
    Fluorescence resonance energy transfer imaging of PKC signalling in living cells using genetically encoded fluorescent probes.
    J R Soc Interface. 2009;6(Suppl_1):S27-34 www.ncbi.nlm.nih.gov
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    Cellular substrates for angiotensin1-7 (Ang1-7) action in the rostral ventro-lateral medulla (RVLM) of the normotentsive and spontaneously hypertensive rat (SHR).
    FASEB J. 2009; 23(1_MeetingAbstracts):958.3
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    Ultrahigh resolution imaging of biomolecules by fluorescence photoactivation localization microscopy.
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    Expression of hybrid cry3aM–licBM2 genes in transgenic potatoes (Solanum tuberosum).
    Plant Cell Tissue Organ Cult. 2009;92(3):321-5 http://www.springerlink.com
  • Jubelin G, Chavez CV, Taieb F, Banfield MJ, Samba-Louaka A, Nobe R, Nougayrede JP, Zumbihl R, Givaudan A, Escoubas JM, Oswald E.
    Cycle inhibiting factors (CIFs) are a growing family of functional cyclomodulins present in invertebrate and mammal bacterial pathogens.
    PLoS One. 2009;4(3):e4855
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    Major signaling pathways in migrating neuroblasts.
    Front Mol Neurosci. 2009;2:7
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  • Kimura A, Ikeo K, Nonaka M.
    Evolutionary origin of the vertebrate blood complement and coagulation systems inferred from liver EST analysis of lamprey.
    Dev Comp Immunol. 2009;33(1):77-87
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    Evolution of the complement components with unique domain structure.
    Doctoral Thesis. 2009; http://repository.dl.itc.u-tokyo.ac.jp
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    Characterizing host receptor recognition by individual bacterial pathogens.
    Methods Mol Biol. 2009;470:57-65
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  • Mukai M, Honda A.
    Analysis of promoter binding proteins of Ebp1 that is inhibitor protein of influenza virus RNA polymerase
    Micro-NanoMechatronics and Human Science, 2009. MHS 2009. International Symposium. 2009;271-4 http://ieeexplore.ieee.org
  • Myers D, Terada L.
    Visualization of Reactive Oxygen Species Production at Focal Adhesions.
    Am J Respir Crit Care Med. 2009; 179(1_MeetingAbstracts):A4166
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    Gateway vectors for plant transformation.
    Plant Biotechnology. 2009;26:275-84 http://www.wdc-jp.biz
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    Genetically Encoded Fluorescent Probes: Some Properties and Applications in Life Sciences.
    In: Fluorescence Applications in Biotechnology and Life Sciences. By Ewa M. Goldys. ISBN: 978-0-470-08370-3. 2009; http://books.google.com
  • Raymond JA, Janech MG, Fritsen CH.
    NOVEL ICE-BINDING PROTEINS FROM A PSYCHROPHILIC ANTARCTIC ALGA (CHLAMYDOMONADACEAE, CHLOROPHYCEAE)
    Journal of Phycology. 2009; 45(1):130-6 http://www3.interscience.wiley.com
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    Chlorophyll a synthesis by an animal using transferred algal nuclear genes.
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2008
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    Reciprocal modulation of function between the D1 and D2 dopamine receptors and the Na+,K+-ATPase.
    J Biol Chem. 2008 Dec 26;283(52):36441-53
    pmid: 18984584
  • Wang X, Su B, Siedlak SL, Moreira PI, Fujioka H, Wang Y, Casadesus G, Zhu X.
    Amyloid-beta overproduction causes abnormal mitochondrial dynamics via differential modulation of mitochondrial fission/fusion proteins.
    Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19318-23
    pmid: 19050078
  • Gould TJ, Gunewardene MS, Gudheti MV, Verkhusha VV, Yin SR, Gosse JA, Hess ST.
    Nanoscale imaging of molecular positions and anisotropies.
    Nat Methods. 2008 Dec;5(12):1027-30
    pmid: 19011626
  • Ikeda T, Ohsugi T, Kimura T, Matsushita S, Maeda Y, Harada S, Koito A.
    The antiretroviral potency of APOBEC1 deaminase from small animal species.
    Nucleic Acids Res. 2008 Dec;36(21):6859-71
    pmid: 18971252
  • Baranova LA, Emel'ianova VP, Zhornik EV, Minov AM, Naumenko LV, Volotovskii ID.
    Cloning and analysis of coding cDNA sequence of human lymphocyte Csk tyrosine kinase under normal conditions and in choroidal melanoma.
    Izv Akad Nauk Ser Biol. 2008 Nov-Dec;(6):663-70 http://www.springerlink.com
    pmid: 19198071
  • Yazawa R, Yasuike M, Leong J, von Schalburg KR, Cooper GA, Beetz-Sargent M, Robb A, Davidson WS, Jones SR, Koop BF.
    EST and mitochondrial DNA sequences support a distinct Pacific form of salmon louse, Lepeophtheirus salmonis.
    Mar Biotechnol (NY). 2008 Nov-Dec;10(6):741-9
    pmid: 18574633
  • Abbott KL, Matthews RT, Pierce M.
    Receptor tyrosine phosphatase beta (RPTPbeta) activity and signaling are attenuated by glycosylation and subsequent cell surface galectin-1 binding.
    J Biol Chem. 2008 Nov 28;283(48):33026-35
    pmid: 18838383
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    Structural characterization of IrisFP, an optical highlighter undergoing multiple photo-induced transformations.
    Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18343-8
    pmid: 19017808
  • Koop BF, von Schalburg KR, Leong J, Walker N, Lieph R, Cooper GA, Robb A, Beetz-Sargent M, Holt RA, Moore R, Brahmbhatt S, Rosner J, Rexroad CE 3rd, McGowan CR, Davidson WS.
    A salmonid EST genomic study: genes, duplications, phylogeny and microarrays.
    BMC Genomics. 2008 Nov 17;9:545
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    Multiplexed FRET to image multiple signaling events in live cells.
    Biophys J. 2008 Nov 15;95(10):L69-71
    pmid: 18757561
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    Importin-mediated retrograde transport of CREB2 from distal processes to the nucleus in neurons.
    Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):17175-80
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    An intracellular wave of cytochrome c propagates and precedes Bax redistribution during apoptosis.
    J Cell Sci. 2008 Nov 1;121(Pt 21):3515-23
    pmid: 18840646
  • Roelofsen T, Akkers R, Beumer W, Apotheker M, Steeghs I, van de Ven J, Gelderblom C, Garritsen A, Dechering K.
    Sphingosine-1-phosphate acts as a developmental stage specific inhibitor of platelet-derived growth factor-induced chemotaxis of osteoblasts.
    J Cell Biochem. 2008 Nov 1;105(4):1128-38
    pmid: 18819098
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    A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana.
    Plant Cell. 2008 Nov;20(11):3006-21
    pmid: 18984676
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    Larvae of related Diptera species from thermally contrasting habitats exhibit continuous up-regulation of heat shock proteins and high thermotolerance.
    Mol Ecol. 2008 Nov;17(21):4763-77
    pmid: 19140990
  • Nikapitiya C, De Zoysa M, Lee J.
    Molecular characterization and gene expression analysis of a pattern recognition protein from disk abalone, Haliotis discus discus.
    Fish Shellfish Immunol. 2008 Nov;25(5):638-47
    pmid: 18782621
  • Niwa S, Tanaka Y, Hirokawa N.
    KIF1Bβ- and KIF1A-mediated axonal transport of presynaptic regulator Rab3 occurs in a GTP-dependent manner through DENN/MADD.
    Nat Cell Biol. 2008 Nov;10(11):1269-79
    pmid: 18849981
  • Ogundiwin EA, Marti C, Forment J, Pons C, Granell A, Gradziel TM, Peace CP, Crisosto CH.
    Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit.
    Plant Mol Biol. 2008 Nov;68(4-5):379-97
    pmid: 18661259
  • Prokupek A, Hoffmann F, Eyun SI, Moriyama E, Zhou M, Harshman L.
    An evolutionary expressed sequence tag analysis of Drosophila spermatheca genes.
    Evolution. 2008 Nov;62(11):2936-47
    pmid: 18752616
  • Pletnev S, Shcherbo D, Chudakov DM, Pletneva N, Merzlyak EM, Wlodawer A, Dauter Z, Pletnev V.
    A crystallographic study of bright far-red fluorescent protein mKate reveals pH-induced cis-trans isomerization of the chromophore.
    J Biol Chem. 2008 Oct 24;283(43):28980-7
    pmid: 18682399
  • Subach OM, Gundorov IS, Yoshimura M, Subach FV, Zhang J, Gruenwald D, Souslova EA, Chudakov DM, Verkhusha VV.
    Conversion of Red Fluorescent Protein into a Bright Blue Probe.
    Chem Biol. 2008 Oct 20;15(10):1116-24
    pmid: 18940671
  • Garcia-Bates TM, Bernstein SH, Phipps RP.
    Peroxisome proliferator-activated receptor gamma overexpression suppresses growth and induces apoptosis in human multiple myeloma cells.
    Clin Cancer Res. 2008 Oct 15;14(20):6414-25
    pmid: 18927280
  • Bushman BS, Larson SR, Mott IW, Cliften PF, Wang RR, Chatterton NJ, Hernandez AG, Ali S, Kim RW, Thimmapuram J, Gong G, Liu L, Mikel MA.
    Development and annotation of perennial Triticeae ESTs and SSR markers.
    Genome. 2008 Oct;51(10):779-88
    pmid: 18923529
  • Mahanama De Zoysaa, Wickramaarachchilage Anoja Pushpamalia, Chulhong Oha, Ilson Whangc, Se Jae Kimc and Jehee Lee.
    Transcriptional up-regulation of disk abalone selenium dependent glutathione peroxidase by H2O2 oxidative stress and Vibrio alginolyticus bacterial infection.
    Fish & Shellfish Immunology. 2008 Oct;25(4):446-57 http://www.sciencedirect.com
  • Pogorelko G, Fursova O, Klimov E.
    Identification and Analysis of the Arabidopsis thaliana Atfas4 Gene Whose Overexpression Results in the Development of A Fasciated Stem.
    J Proteomics Bioinform. 2008 Oct;1(7):329-335
    pmid: 19295920
  • Powers SK, Jackson MJ.
    Exercise-induced oxidative stress: cellular mechanisms and impact on muscle force production.
    Physiol Rev. 2008 Oct;88(4):1243-76
    pmid: 18923182
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    Rainbow smelt (Osmerus mordax) genomic library and EST resources.
    Mar Biotechnol (NY). 2008 Sep-Oct;10(5):487-91
    pmid: 18386095
  • Ouyang M, Sun J, Chien S, Wang Y.
    Determination of hierarchical relationship of Src and Rac at subcellular locations with FRET biosensors.
    Proc Natl Acad Sci U S A. 2008 Sep 23;105(38):14353-8
    pmid: 18799748
  • Manna D, Bhardwaj N, Vora MS, Stahelin RV, Lu H, Cho W.
    Differential roles of phosphatidylserine, PtdIns(4,5)P2, and PtdIns(3,4,5)P3 in plasma membrane targeting of C2 domains. Molecular dynamics simulation, membrane binding, and cell translocation studies of the PKCalpha C2 domain.
    J Biol Chem. 2008 Sep 19;283(38):26047-58
    pmid: 18621733
  • Baker K, Holtzman NG, Burdine RD.
    Direct and indirect roles for Nodal signaling in two axis conversions during asymmetric morphogenesis of the zebrafish heart.
    Proc Natl Acad Sci U S A. 2008 Sep 16;105(37):13924-9
    pmid: 18784369
  • Tachibana K, Hara M, Hattori Y, Kishimoto T.
    Cyclin B-cdk1 controls pronuclear union in interphase.
    Curr Biol. 2008 Sep 9;18(17):1308-13
    pmid: 18701285
  • Nokes RL, Fields IC, Collins RN, Folsch H.
    Rab13 regulates membrane trafficking between TGN and recycling endosomes in polarized epithelial cells.
    J Cell Biol. 2008 Sep 8;182(5):845-53
    pmid: 18779367
  • Greber D, El-Baba MD, Fussenegger M.
    Intronically encoded siRNAs improve dynamic range of mammalian gene regulation systems and toggle switch.
    Nucleic Acids Res. 2008 Sep;36(16):e101
    pmid: 18632760
  • Ohsawa S, Hamada S, Yoshida H, Miura M.
    Caspase-mediated changes in histone H1 in early apoptosis: prolonged caspase activation in developing olfactory sensory neurons.
    Cell Death Differ. 2008 Sep;15(9):1429-39
    pmid: 18483489
  • Solstad T, Larsen AN, Seppola M, Jorgensen TO.
    Identification, cloning and expression analysis of a hepcidin cDNA of the Atlantic cod (Gadus morhua L.).
    Fish Shellfish Immunol. 2008 Sep;25(3):298-310
    pmid: 18602479
  • Brautigam A, Shrestha RP, Whitten D, Wilkerson CG, Carr KM, Froehlich JE, Weber AP.
    Low-coverage massively parallel pyrosequencing of cDNAs enables proteomics in non-model species: comparison of a species-specific database generated by pyrosequencing with databases from related species for proteome analysis of pea chloroplast envelopes.
    J Biotechnol. 2008 Aug 31;136(1-2):44-53
    pmid: 18394738
  • de la Fuente J, Maritz-Olivier C, Naranjo V, Ayoubi P, Nijhof AM, Almazan C, Canales M, Perez de la Lastra JM, Galindo RC, Blouin EF, Gortazar C, Jongejan F, Kocan KM.
    Evidence of the role of tick subolesin in gene expression.
    BMC Genomics. 2008 Aug 2;9:372
    pmid: 18673577
  • Duan Z, Weinstein EJ, Ji D, Ames RY, Choy E, Mankin H, Hornicek FJ.
    Lentiviral short hairpin RNA screen of genes associated with multidrug resistance identifies PRP-4 as a new regulator of chemoresistance in human ovarian cancer.
    Mol Cancer Ther. 2008 Aug;7(8):2377-85
    pmid: 18687998
  • Held MA, Boulaflous A, Brandizzi F.
    Advances in fluorescent protein-based imaging for the analysis of plant endomembranes.
    Plant Physiol. 2008 Aug;147(4):1469-81
    pmid: 18678739
  • Koh SW, Chandrasekara K, Abbondandolo CJ, Coll TJ, Rutzen AR.
    VIP and VIP gene silencing modulation of differentiation marker N-cadherin and cell shape of corneal endothelium in human corneas ex vivo.
    Invest Ophthalmol Vis Sci. 2008 Aug;49(8):3491-8
    pmid: 18441300
  • Stepanenko OV, Verkhusha VV, Kuznetsova IM, Uversky VN, Turoverov KK.
    Fluorescent proteins as biomarkers and biosensors: throwing color lights on molecular and cellular processes.
    Curr Protein Pept Sci. 2008 Aug;9(4):338-69 http://asb.aecom.yu.edu
    pmid: 18691124
  • Wang YY, Yang Y, Chen Q, Yu J, Hou Y, Han L, He J, Jiao D, Yu H.
    Simultaneous knockdown of p18INK4C, p27Kip1 and MAD1 via RNA interference results in the expansion of long-term culture-initiating cells of murine bone marrow cells in vitro.
    Acta Biochim Biophys Sin (Shanghai). 2008 Aug;40(8):711-20
    pmid: 18685787
  • Danilevich VN, Petrovskaya LE, Grishin EV.
    DNA nano- and microparticles: new products of polymerase chain reaction.
    Dokl Biochem Biophys. 2008 Jul-Aug;421:168-70 http://www.springerlink.com
    pmid: 18853764
  • Deliolanis NC, Kasmieh R, Wurdinger T, Tannous BA, Shah K, Ntziachristos V.
    Performance of the red-shifted fluorescent proteins in deep-tissue molecular imaging applications.
    J Biomed Opt. 2008 Jul-Aug;13(4):044008
    pmid: 19021336
  • Kondrat'eva TF, Danilevich VN, Karavaiko GI.
    The primary structure and characteristics of the ISAfe600, an insertion sequence from Acidithiobacillus ferrooxidans strains.
    Mikrobiologiia. 2008 Jul-Aug;77(4):524-32 http://www.springerlink.com
    pmid: 18825980
  • Marakhonov AV, Baranova AV, Skoblov MIu.
    Antisense regulation of human gene MAP3K13: true phenomenon or artifact?
    Mol Biol (Mosk). 2008 Jul-Aug;42(4):581-7 http://www.springerlink.com
    pmid: 18856057
  • Turchin IV, Kamensky VA, Plehanov VI, Orlova AG, Kleshnin MS, Fiks II, Shirmanova MV, Meerovich IG, Arslanbaeva LR, Jerdeva VV, Savitsky AP.
    Fluorescence diffuse tomography for detection of red fluorescent protein expressed tumors in small animals.
    J Biomed Opt. 2008 Jul-Aug;13(4):041310
    pmid: 19021318
  • Anisimova VE, Shcheglov AS, Bogdanova EA, Rebrikov DV, Nekrasov AN, Barsova EV, Shagin DA, Lukyanov SA.
    Is crab duplex-specific nuclease a member of the Serratia family of non-specific nucleases?
    Gene. 2008 Jul 15;418(1-2):41-8
    pmid: 18514436
  • Oikawa T, Itoh T, Takenawa T.
    Sequential signals toward podosome formation in NIH-src cells.
    J Cell Biol. 2008 Jul 14;182(1):157-69
    pmid: 18606851
  • Yamauchi J, Miyamoto Y, Kusakawa S, Torii T, Mizutani R, Sanbe A, Nakajima H, Kiyokawa N, Tanoue A.
    Neurofibromatosis 2 tumor suppressor, the gene induced by valproic acid, mediates neurite outgrowth through interaction with paxillin.
    Exp Cell Res. 2008 Jul 1;314(11-12):2279-88
    pmid: 18486129
  • Brown MM, Williams TD, Chipman JK, Katsiadaki I, Sanders M, Craft JA.
    Construction of subtracted EST and normalised cDNA libraries from liver of chemical-exposed three-spined stickleback (Gasterosteus aculeatus) containing pollutant-responsive genes as a resource for transcriptome analysis.
    Mar Environ Res. 2008 Jul;66(1):127-30
    pmid: 18397803
  • Khan ZA, Boscolo E, Picard A, Psutka S, Melero-Martin JM, Bartch TC, Mulliken JB, Bischoff J.
    Multipotential stem cells recapitulate human infantile hemangioma in immunodeficient mice.
    J Clin Invest. 2008 Jul;118(7):2592-9
    pmid: 18535669
  • Paulmann D, Magulski T, Schwarz R, Heitmann L, Flehmig B, Vallbracht A, Dotzauer A.
    Hepatitis A virus protein 2B suppresses beta interferon (IFN) gene transcription by interfering with IFN regulatory factor 3 activation.
    J Gen Virol. 2008 Jul;89(Pt 7):1593-604
    pmid: 18559929
  • Novaes E, Drost DR, Farmerie WG, Pappas GJ Jr, Grattapaglia D, Sederoff RR, Kirst M.
    High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.
    BMC Genomics. 2008 Jun 30;9:312
    pmid: 18590545
  • Arrach N, Zhao M, Porwollik S, Hoffman RM, McClelland M.
    Salmonella promoters preferentially activated inside tumors.
    Cancer Res. 2008 Jun 15;68(12):4827-32
    pmid: 18559530
  • Lin MZ, Glenn JS, Tsien RY.
    A drug-controllable tag for visualizing newly synthesized proteins in cells and whole animals.
    Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7744-9.
    pmid: 18511556
  • Baltrusch S, Lenzen S.
    Monitoring of glucose-regulated single insulin secretory granule movement by selective photoactivation.
    Diabetologia. 2008 Jun;51(6):989-96
    pmid: 18389213
  • Garcia-Reyero N, Griffitt RJ, Liu L, Kroll KJ, Farmerie WG, Barber DS, Denslow ND.
    Construction of a robust microarray from a non-model species largemouth bass, Micropterus salmoides (Lacepede), using pyrosequencing technology.
    J Fish Biol. 2008 Jun;72(9):2354-76 http://www3.interscience.wiley.com
  • Kapoor V, Karpov V, Linton C, Subach FV, Verkhusha VV, Telford WG.
    Solid state yellow and orange lasers for flow cytometry.
    Cytometry A. 2008 Jun;73(6):570-7
    pmid: 18449918
  • Shaner NC, Lin MZ, McKeown MR, Steinbach PA, Hazelwood KL, Davidson MW, Tsien RY.
    Improving the photostability of bright monomeric orange and red fluorescent proteins.
    Nat Methods. 2008 Jun;5(6):545-51
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  • Tian Y, Corkey RF, Yaney GC, Goforth PB, Satin LS, Moitoso de Vargas L.
    Differential modulation of L-type calcium channel subunits by oleate.
    Am J Physiol Endocrinol Metab. 2008 Jun;294(6):E1178-86
    pmid: 18430963
  • Winnard PT Jr, Pathak AP, Dhara S, Cho SY, Raman V, Pomper MG.
    Molecular imaging of metastatic potential.
    J Nucl Med. 2008 Jun;49 Suppl 2:96S-112S
    pmid: 18523068
  • Glazkov MV, Drozd SF, Golovatenko-Abramov PK, Martynova MIu, Nesterova AP.
    Survival of transgenic mouse embryos carrying different genetic constructs.
    Ontogenez. 2008 May-Jun;39(3):208-11 http://www.springerlink.com
    pmid: 18634333
  • Yamochi T, Ohnuma K, Hosono O, Tanaka H, Kanai Y, Morimoto C.
    SSA/Ro52 autoantigen interacts with Dcp2 to enhance its decapping activity.
    Biochem Biophys Res Commun. 2008 May 23;370 (1):195-9
    pmid: 18361920
  • Anisimova VE, Rebrikov DV, Shagin DA, Kozhemyako VB, Menzorova NI, Staroverov DB, Ziganshin R, Vagner LL, Rasskazov VA, Lukyanov SA, Shcheglov AS.
    Isolation, characterization and molecular cloning of duplex-specific nuclease from the hepatopancreas of the Kamchatka crab.
    BMC Biochem. 2008 May 21;9:14
    pmid: 18495036
  • Logacheva MD, Samigullin TH, Dhingra A, Penin AA.
    Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale -a wild ancestor of cultivated buckwheat.
    BMC Plant Biol. 2008 May 20;8:59
    pmid: 18492277
  • Motley AM, Ward GP, Hettema EH.
    Dnm1p-dependent peroxisome fission requires Caf4p, Mdv1p and Fis1p.
    J Cell Sci. 2008 May 15;121(Pt 10):1633-40
    pmid: 18445678
  • Kwok S, Lee C, Sanchez SA, Hazlett TL, Gratton E, Hayashi Y.
    Genetically encoded probe for fluorescence lifetime imaging of CaMKII activity.
    Biochem Biophys Res Commun. 2008 May 2;369(2):519-25
    pmid: 18302935
  • Chernov I, Stukacheva E, Akopov S, Didych D, Nikolaev L, Sverdlov E.
    A new technique for selective identification and mapping of enhancers within long genomic sequences.
    Biotechniques. 2008 May;44(6):775-84
    pmid: 18476831
  • Fischer HM, Wheat CW, Heckel DG, Vogel H.
    Evolutionary origins of a novel host plant detoxification gene in butterflies.
    Mol Biol Evol. 2008 May;25(5):809-20
    pmid: 18296701
  • Nikapitiya C, De Zoysa M, Kang HS, Oh C, Whang I, Lee J.
    Molecular characterization and expression analysis of regucalcin in disk abalone (Haliotis discus discus): Intramuscular calcium administration stimulates the regucalcin mRNA expression.
    Comp Biochem Physiol B Biochem Mol Biol. 2008 May;150(1):117-24
    pmid: 18372203
  • Witze ES, Litman ES, Argast GM, Moon RT, Ahn NG.
    Wnt5a control of cell polarity and directional movement by polarized redistribution of adhesion receptors.
    Science. 2008 Apr 18;320(5874):365-9.
    pmid: 18420933
  • De Zoysa M, Pushpamali WA, Whang I, Kim SJ, Lee J.
    Mitochondrial thioredoxin-2 from disk abalone (Haliotis discus discus): Molecular characterization, tissue expression and DNA protection activity of its recombinant protein.
    Comp Biochem Physiol B Biochem Mol Biol. 2008 Apr;149(4):630-9
    pmid: 18255328
  • Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH.
    Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.
    Mol Ecol. 2008 Apr;17(7):1636-47
    pmid: 18266620
  • Wang L, Zhou GB, Liu P, Song JH, Liang Y, Yan XJ, Xu F, Wang BS, Mao JH, Shen ZX, Chen SJ, Chen Z.
    Dissection of mechanisms of Chinese medicinal formula Realgar-Indigo naturalis as an effective treatment for promyelocytic leukemia.
    Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4826-31
    pmid: 18344322
  • Satoh T, Arii J, Suenaga T, Wang J, Kogure A, Uehori J, Arase N, Shiratori I, Tanaka S, Kawaguchi Y, Spear PG, Lanier LL, Arase H.
    PILRalpha is a herpes simplex virus-1 entry coreceptor that associates with glycoprotein B.
    Cell. 2008 Mar 21;132(6):935-44
    pmid: 18358807
  • Holmstrom TH, Mialon A, Kallio M, Nymalm Y, Mannermaa L, Holm T, Johansson H, Black E, Gillespie D, Salminen TA, Langel U, Valdez BC, Westermarck J.
    c-Jun Supports Ribosomal RNA Processing and Nucleolar Localization of RNA Helicase DDX21.
    J Biol Chem. 2008 Mar 14;283(11):7046-53
    pmid: 18180292
  • Bogdanova EA, Shagin DA, Lukyanov SA.
    Normalization of full-length enriched cDNA.
    Mol Biosyst. 2008 Mar;4(3):205-12
    pmid: 18437263
  • Ekanayake PM, De Zoysa M, Kang HS, Wan Q, Jee Y, Lee YH, Kim SJ, Lee J.
    Cloning, characterization and tissue expression of disk abalone (Haliotis discus discus) catalase.
    Fish Shellfish Immunol. 2008 Mar;24(3):267-78
    pmid: 18187341
  • Hirayama S, Yamazaki Y, Kitamura A, Oda Y, Morito D, Okawa K, Kimura H, Cyr DM, Kubota H, Nagata K.
    MKKS Is a Centrosome-shuttling Protein Degraded by Disease-causing Mutations via CHIP-mediated Ubiquitination.
    Mol Biol Cell. 2008 Mar;19(3):899-911
    pmid: 18094050
  • Martynova NY, Eroshkin FM, Ermolina LV, Ermakova GV, Korotaeva AL, Smurova KM, Gyoeva FK, Zaraisky AG.
    The LIM-domain protein Zyxin binds the homeodomain factor Xanf1/Hesx1 and modulates its activity in the anterior neural plate of Xenopus laevis embryo.
    Dev Dyn. 2008 Mar;237(3):736-49
    pmid: 18297730
  • Pushpamali WA, De Zoysa M, Kang HS, Oh CH, Whang I, Kim SJ, Lee J.
    Comparative study of two thioredoxin peroxidases from disk abalone (Haliotis discus discus): Cloning, recombinant protein purification, characterization of antioxidant activities and expression analysis.
    Fish Shellfish Immunol. 2008 Mar;24(3):294-307
    pmid: 18226547
  • Chini V, Cattaneo AG, Rossi F, Bernardini G, Terova G, Saroglia M, Gornati R.
    Genes expressed in Blue Fin Tuna (Thunnus thynnus) liver and gonads.
    Gene. 2008 Feb 29;410(1):207-13
    pmid: 18234455
  • Salzburger W, Renn SC, Steinke D, Braasch I, Hofmann HA, Meyer A.
    Annotation of expressed sequence tags for the East African cichlid fish Astatotilapia burtoni and evolutionary analyses of cichlid ORFs.
    BMC Genomics. 2008 Feb 25;9:96
    pmid: 18298844
  • Chain FJ, Ilieva D, Evans BJ.
    Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization.
    BMC Evol Biol. 2008 Feb 8;8:43
    pmid: 18261230
  • Sohn YS, Breuer W, Munnich A, Cabantchik ZI.
    Redistribution of accumulated cell iron: a modality of chelation with therapeutic implications.
    Blood. 2008 Feb 1;111(3):1690-9
    pmid: 17975016
  • Naumova OIu, Rychkov SIu, Morozova IIu, Khaiat SSh, Semikov AV, Zhukova OV.
    Mitochondrial DNA diversity in Siberian Tatars of the Tobol-Irtysh basin.
    Genetika. 2008 Feb;44(2):257-68 http://www.springerlink.com
    pmid: 18619046
  • Seppola M, Larsen AN, Steiro K, Robertsen B, Jensen I.
    Characterisation and expression analysis of the interleukin genes, IL-1beta, IL-8 and IL-10, in Atlantic cod (Gadus morhua L.).
    Mol Immunol. 2008 Feb;45(4):887-97
    pmid: 17875325
  • Zhao Y, Hoshiyama H, Shay JW, Wright WE.
    Quantitative telomeric overhang determination using a double-strand specific nuclease.
    Nucleic Acids Res. 2008 Feb;36(3):e14
    pmid: 18073199
  • Belogurov AA Jr, Kurkova IN, Friboulet A, Thomas D, Misikov VK, Zakharova MY, Suchkov SV, Kotov SV, Alehin AI, Avalle B, Souslova EA, Morse HC 3rd, Gabibov AG, Ponomarenko NA.
    Recognition and degradation of myelin basic protein peptides by serum autoantibodies: novel biomarker for multiple sclerosis.
    J Immunol. 2008 Jan 15;180(2):1258-67
    pmid: 18178866
  • Peng RH, Xiong AS, Xue Y, Li X, Liu JG, Cai B, Yao QH.
    Kamchatka crab duplex-specific nuclease-mediated transcriptome subtraction method for identifying long cDNAs of differentially expressed genes.
    Anal Biochem. 2008 Jan 15;372(2):148-55
    pmid: 17905189
  • Kadereit B, Kumar P, Wang WJ, Miranda D, Snapp EL, Severina N, Torregroza I, Evans T, Silver DL.
    Evolutionarily conserved gene family important for fat storage.
    Proc Natl Acad Sci U S A. 2008 Jan 8;105(1):94-9
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    A better fluorescent protein for whole-body imaging.
    Trends Biotechnol. 2008 Jan;26(1):1-4
    pmid: 18037177
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    A practical approach for intracellular protein delivery.
    Cytotechnology. 2008 Jan;56(1):41-8
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    Vital labeling of embryonic cells using fluorescent dyes and proteins.
    Methods Cell Biol. 2008;87:187-210
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    Optimization of the Preparation of ds cDNA from Flower Buds of Apricot for the cDNA-AFLP Analysis.
    I International Symposium on Biotechnology of Fruit Species: BIOTECHFRUIT2008. 2008; http://www.actahort.org/books
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    Imaging of intracellular hydrogen peroxide production with HyPer upon stimulation of HeLa cells with EGF.
    Methods Mol Biol. 2008;476:79-86
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    Photoactivation cell labeling for cell tracing in avian development.
    CSH Protocols. 2008; pdb.prot4975
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    Development of a multiplex PCR for detection of the Yersinia genus with identification of pathogenic species (Y. pestis, Y. pseudotuberculosis, Y. enterocolitica).
    Mol Gen Mikrobiol Virusol. 2008;(3):18-23 http://www.springerlink.com
    pmid: 18756819
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    A novel C-type lectin from abalone, Haliotis discus discus, agglutinates Vibrio alginolyticus.
    Dev Comp Immunol. 2008;32(9):1034-40
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2007
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    Surviving extreme polar winters by desiccation: clues from Arctic springtail (Onychiurus arcticus) EST libraries.
    BMC Genomics. 2007 Dec 21;8:475
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    Dual-color superresolution imaging of genetically expressed probes within individual adhesion complexes.
    Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20308-13
    pmid: 18077327
  • Miyamoto Y, Yamauchi J, Chan JR, Okada A, Tomooka Y, Hisanaga S, Tanoue A.
    Cdk5 regulates differentiation of oligodendrocyte precursor cells through the direct phosphorylation of paxillin.
    J Cell Sci. 2007 Dec 15;120(Pt 24):4355-66
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    Advances in fluorescent protein technology.
    J Cell Sci. 2007 Dec 15;120(Pt 24):4247-60
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    Redundant enhancement of mouse constitutive androstane receptor transactivation by p160 coactivator family members.
    Arch Biochem Biophys. 2007 Dec 1;468(1):49-57
    pmid: 17950690
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    Identification of two down-regulated genes in entomopathogenic nematode Heterorhabditis bacteriophora infective juveniles upon contact with insect hemolymph.
    Mol Biochem Parasitol. 2007 Dec;156(2):162-6
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    Functional genomic studies of tick cells in response to infection with the cattle pathogen, Anaplasma marginale.
    Genomics. 2007 Dec;90(6):712-22
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    New gateways to discovery.
    Plant Physiol. 2007 Dec;145(4):1100-9
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    Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design.
    BMC Genomics. 2007 Nov 16;8:423
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    Construction of cDNA library of cotton mutant (Xiangmian-18) library during gland forming stage.
    Colloids Surf B Biointerfaces. 2007 Nov 15;60(2):258-263
    pmid: 17689935
  • He T, Zong S, Wu X, Wei Y, Xiang J
    CD4+ T cell acquisition of the bystander pMHC I colocalizing in the same immunological synapse comprising pMHC II and costimulatory CD40, CD54, CD80, OX40L, and 41BBL.
    Biochem Biophys Res Commun. 2007 Nov 3;362(4):822-8
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    Molecular cloning and expression analysis of interferon-gamma inducible lysosomal thiol reductase (GILT)-like cDNA from disk abalone (Haliotis discus discus).
    J Invertebr Pathol. 2007 Nov;96(3):221-9
    pmid: 17599346
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    Analysis of de novo Golgi complex formation after enzyme-based inactivation.
    Mol Biol Cell. 2007 Nov;18(11):4637-47
    pmid: 17855505
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    Germ-line transformation of the Mexican fruit fly.
    Insect Mol Biol. 2007 Oct;16(5):573-80
    pmid: 17894556
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    Refined crystal structures of red and green fluorescent proteins from the button polyp Zoanthus.
    Acta Crystallogr D Biol Crystallogr. 2007 Oct;63(Pt 10):1082-93
    pmid: 17881826
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    Collembase: a repository for springtail genomics and soil quality assessment.
    BMC Genomics. 2007 Sep 27;8:341
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    MELOGEN: an EST database for melon functional genomics.
    BMC Genomics. 2007 Sep 3;8:306
    pmid: 17767721
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    A comparative analysis of novel fluorescent proteins as reporters for gene transfer studies.
    J Histochem Cytochem. 2007 Sep;55(9):931-9
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    The fluorescent protein color palette.
    Curr Protoc Cell Biol. 2007 Sep;Chapter 21:Unit 21.5
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    Efficient nucleofection of primary human B cells and B-CLL cells induces apoptosis, which depends on the microenvironment and on the structure of transfected nucleic acids.
    Leukemia. 2007 Sep;21(9):1977-83
    pmid: 17637809
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    Bright far-red fluorescent protein for whole-body imaging.
    Nat Methods. 2007 Sep;4(9):741-6
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    Differential gene expression and Hog1 interaction with osmoresponsive genes in the extremely halotolerant black yeast Hortaea werneckii.
    BMC Genomics. 2007 Aug 16;8:280
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    Regulation of neurite growth by spontaneous Ca2+ oscillations in astrocytes.
    J Neurosci. 2007 Aug 15;27(33):8957-66
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  • Yockteng R, Marthey S, Chiapello H, Gendrault A, Hood ME, Rodolphe F, Devier B, Wincker P, Dossat C, Giraud T.
    Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes.
    BMC Genomics. 2007 Aug 10;8:272
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    Nucleotide excision repair eliminates unique DNA-protein cross-links from mammalian cells.
    J Biol Chem. 2007 Aug 3;282(31):22592-604
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    Three-dimensional structure of yellow fluorescent protein zYFP538 from Zoanthus sp. at the resolution 1.8 angstrom.
    Bioorg Khim. 2007 Jul-Aug;33(4):421-30 http://www.springerlink.com
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    Yeast peroxisomes multiply by growth and division.
    J Cell Biol. 2007 Jul 30;178(3):399-410
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    RNAi screen identifies UBE2D3 as a mediator of all-trans retinoic acid-induced cell growth arrest in human acute promyelocytic NB4 cells.
    Blood. 2007 Jul 15;110(2):640-50
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  • Abe Y, Takeuchi T, Kagawa-Miki L, Ueda N, Shigemoto K, Yasukawa M, Kito K.
    A mitotic kinase TOPK enhances Cdk1/cyclin B1-dependent phosphorylation of PRC1 and promotes cytokinesis.
    J Mol Biol. 2007 Jul 6;370(2):231-45
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  • Hong J, Doebele RC, Lingen MW, Quilliam LA, Tang WJ, Rosner MR.
    Anthrax edema toxin inhibits endothelial cell chemotaxis via Epac and Rap1.
    J Biol Chem. 2007 Jul 6;282(27):19781-7
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    First report of invertebrate Mx: cloning, characterization and expression analysis of Mx cDNA in disk abalone (Haliotis discus discus).
    Fish Shellfish Immunol. 2007 Jul;23(1):86-96
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    Glutamine stimulates translation of uncoupling protein 2mRNA.
    Cell Mol Life Sci. 2007 Jul;64(14):1853-60
    pmid: 17514359
  • Li QB, Chen ZC, You Y, Zou P.
    Small interfering RNA of cyclooxygenase-2 induces growth inhibition and apoptosis independently of Bcl-2 in human myeloma RPMI8226 cells.
    Acta Pharmacol Sin. 2007 Jul;28(7):1031-6
    pmid: 17588340
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    Bright monomeric red fluorescent protein with an extended fluorescence lifetime.
    Nat Methods. 2007 Jul;4(7):555-7
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    Genetically encoded intracellular sensors based on fluorescent proteins.
    Biochemistry (Mosc). 2007 Jul;72(7):683-97
    pmid: 17680759
  • Souslova EA, Belousov VV, Lock J, Stromblad S, Kasparov S, Bolshakov AP, Pinelis VG, Labas YA, Lukyanov S, Mayr LM, Chudakov DM.
    Single fluorescent protein-based Ca2+ sensors with increased dynamic range.
    BMC Biotechnol. 2007 Jun 29;7:37
    pmid: 17603870
  • Abernathy JW, Xu P, Li P, Xu DH, Kucuktas H, Klesius P, Arias C, Liu Z.
    Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis.
    BMC Genomics. 2007 Jun 18;8:176
    pmid: 17577414
  • Quilang J, Wang S, Li P, Abernathy J, Peatman E, Wang Y, Wang L, Shi Y, Wallace R, Guo X, Liu Z.
    Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers.
    BMC Genomics. 2007 Jun 8;8:157
    pmid: 17559679
  • Douglas SE, Knickle LC, Kimball J, Reith ME.
    Comprehensive EST analysis of Atlantic halibut (Hippoglossus hippoglossus), a commercially relevant aquaculture species.
    BMC Genomics. 2007 Jun 4;8:144
    pmid: 17547761
  • Issa R, Xie S, Khorasani N, Sukkar M, Adcock IM, Lee KY, Chung KF.
    Corticosteroid inhibition of growth-related oncogene protein-alpha via mitogen-activated kinase phosphatase-1 in airway smooth muscle cells.
    J Immunol. 2007 Jun 1;178(11):7366-75
    pmid: 17513787
  • Chiappetta G, De Marco C, Quintiero A, Califano D, Gherardi S, Malanga D, Scrima M, Montero-Conde C, Cito L, Monaco M, Motti ML, Pasquinelli R, Agosti V, Robledo M, Fusco A, Viglietto G.
    Overexpression of the S-phase kinase-associated protein 2 in thyroid cancer.
    Endocr Relat Cancer. 2007 Jun;14(2):405-20
    pmid: 17639054
  • D'Autreaux F, Morikawa Y, Cserjesi P, Gershon MD.
    Hand2 is necessary for terminal differentiation of enteric neurons from crest-derived precursors but not for their migration into the gut or for formation of glia.
    Development. 2007 Jun;134(12):2237-49
    pmid: 17507395
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    An in vivo comparison of photoactivatable fluorescent proteins in an avian embryo model.
    Dev Dyn. 2007 Jun;236(6):1583-94
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    Fluorescent proteins and their use in marine biosciences, biotechnology, and proteomics.
    Mar Biotechnol (NY). 2007 May-Jun;9(3):305-28
    pmid: 17372780
  • Yamauchi J, Miyamoto Y, Murabe M, Fujiwara Y, Sanbe A, Fujita Y, Murase S, Tanoue A.
    Gadd45a, the gene induced by the mood stabilizer valproic acid, regulates neurite outgrowth through JNK and the substrate paxillin in N1E-115 neuroblastoma cells.
    Exp Cell Res. 2007 May 15;313(9):1886-96
    pmid: 17428471
  • Morimoto A, Matsunaga S, Kurihara D, Fukui K.
    Visualization of mitotic HeLa cells by advanced polarized light microscopy.
    Micron. 2007 May 10;
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  • Baltrusch S, Lenzen S.
    Novel insights into the regulation of the bound and diffusible glucokinase in MIN6 β-cells.
    Diabetes. 2007 May;56(5):1305-15
    pmid: 17287461
  • Chudakov DM, Lukyanov S, Lukyanov KA.
    Using photoactivatable fluorescent protein Dendra2 to track protein movement.
    Biotechniques. 2007 May;42(5):553, 555, 557 passim
    pmid: 17515192
  • Danley PD, Mullen SP, Liu F, Nene V, Quackenbush J, Shaw KL.
    A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution.
    BMC Genomics. 2007 Apr 25;8:109
    pmid: 17459168
  • Ray P, Tsien R, Gambhir SS.
    Construction and validation of improved triple fusion reporter gene vectors for molecular imaging of living subjects.
    Cancer Res. 2007 Apr 1;67(7):3085-93
    pmid: 17409415
  • Zhang L, Gurskaya NG, Merzlyak EM, Staroverov DB, Mudrik NN, Samarkina ON, Vinokurov LM, Lukyanov S, Lukyanov KA.
    Method for real-time monitoring of protein degradation at the single cell level.
    Biotechniques. 2007 Apr;42(4):446, 448, 450
    pmid: 17489230
  • Pfister D, De Mulder K, Philipp I, Kuales G, Hrouda M, Eichberger P, Borgonie G, Hartenstein V, Ladurner P.
    The exceptional stem cell system of Macrostomum lignano: Screening for gene expression and studying cell proliferation by hydroxyurea treatment and irradiation.
    Front Zool. 2007 Mar 9;4:9
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    Vasopressin stimulates action potential firing by protein kinase C-dependent inhibition of KCNQ5 in A7r5 rat aortic smooth muscle cells.
    Am J Physiol Heart Circ Physiol. 2007 Mar;292(3):H1352-63
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  • Zaragosi LE, Billon N, Ailhaud G, Dani C.
    Nucleofection is a valuable transfection method for transient and stable transgene expression in adipose tissue-derived stem cells.
    Stem Cells. 2007 Mar;25(3):790-7
    pmid: 17158239
  • Hultman KA, Bahary N, Zon LI, Johnson SL.
    Gene Duplication of the zebrafish kit ligand and partitioning of melanocyte development functions to kit ligand a.
    PLoS Genet. 2007 Jan 26;3(1):e17
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    Aberrant transcriptional regulation of the MLL fusion partner EEN by AML1-ETO and its implication in leukemogenesis.
    Blood. 2007 Jan 15;109(2):769-77
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    Developmental biology of the Psammomys obesus pancreas: cloning and expression of the Neurogenin-3 gene.
    J Histochem Cytochem. 2007 Jan;55(1):97-104
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    Tracking intracellular protein movements using photoswitchable fluorescent proteins PS-CFP2 and Dendra2.
    Nat Protoc. 2007;2(8):2024-32
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    A Thousand Proteins of Light: 15 Years of Advances in Fluorescent Proteins.
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    Identifying Candidate Genes Associated with Cold Adaptation in Douglas-fir using DNA Microarrays.
    Master of Science thesis (Oregon State University). 2007;P.118 http://hdl.handle.net/1957/3097
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    Selective suppression of polymerase chain reaction and its most popular applications.
    In: Nucleic Acids Hybridization: Modern Applications. Buzdin, Anton; Lukyanov, Sergey (Eds.) ISBN: 978-1-4020-6039-7. 2007;29-51 http://www.springerlink.com
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    Suppression subtractive hybridization.
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    Normalization of cDNA Libraries.
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    Keeping tabs on fluorescent tags.
    Nat Methods. 2007;4(9):755-760 http://www.nature.com
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    Transactivation of a DR-1 PPRE by a human constitutive androstane receptor variant expressed from internal protein translation start sites.
    Nucleic Acids Res. 2007;35(7):2177-90
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    An annotated cDNA library and microarray for large-scale gene-expression studies in the ant Solenopsis invicta.
    Genome Biol. 2007;8(1):R9
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2006
  • Moroz LL, Edwards JR, Puthanveettil SV, Kohn AB, Ha T, Heyland A, Knudsen B, Sahni A, Yu F, Liu L, Jezzini S, Lovell P, Iannucculli W, Chen M, Nguyen T, Sheng H, Shaw R, Kalachikov S, Panchin YV, Farmerie W, Russo JJ, Ju J, Kandel ER.
    Neuronal transcriptome of aplysia: neuronal compartments and circuitry.
    Cell. 2006 Dec 29;127(7):1453-67
    pmid: 17190607
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    Fluorescent proteins: maturation, photochemistry and photophysics.
    Curr Opin Struct Biol. 2006 Dec;16(6):714-21
    pmid: 17064887
  • Wolff M, Wiedenmann J, Nienhaus GU, Valler M, Heilker R.
    Novel fluorescent proteins for high-content screening.
    Drug Discov Today. 2006 Dec;11(23-24):1054-60
    pmid: 17129823
  • Vallon M, Essler M.
    Proteolytically processed soluble tumor endothelial marker (TEM) 5 mediates endothelial cell survival during angiogenesis by linking integrin alpha(v)beta3 to glycosaminoglycans.
    J Biol Chem. 2006 Nov 10;281(45):34179-88
    pmid: 16982628
  • Ebert A, Tittmann BR, Du J, Scheuchenzuber W.
    Technique for rapid in vitro single-cell elastography.
    Ultrasound Med Biol. 2006 Nov;32(11):1687-702
    pmid: 17112955
  • Agarwal S, Harada J, Schreifels J, Lech P, Nikolai B, Yamaguchi T, Chanda SK, Somia NV.
    Isolation, characterization, and genetic complementation of a cellular mutant resistant to retroviral infection.
    Proc Natl Acad Sci U S A. 2006 Oct 24;103(43):15933-8
    pmid: 17043244
  • Cheung F, Haas BJ, Goldberg SM, May GD, Xiao Y, Town CD.
    Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology.
    BMC Genomics. 2006 Oct 24;7:272
    pmid: 17062153
  • Chudakov DM, Chepurnykh TV, Belousov VV, Lukyanov S, Lukyanov KA.
    Fast and precise protein tracking using repeated reversible photoactivation.
    Traffic. 2006 Oct;7(10):1304-10
    pmid: 16889652
  • Evdokimov AG, Pokross ME, Egorov NS, Zaraisky AG, Yampolsky IV, Merzlyak EM, Shkoporov AN, Sander I, Lukyanov KA, Chudakov DM.
    Structural basis for the fast maturation of Arthropoda green fluorescent protein.
    EMBO Rep. 2006 Oct;7(10):1006-12
    pmid: 16936637
  • Serganova I , Moroz E, Moroz M, Pillarsetty N, Blasberg R
    Non-invasive molecular imaging and reporter genes.
    Central European Journal of Biology. 2006 1;1:88-123 http://www.springer.com/
  • Patwari P, Higgins LJ, Chutkow WA, Yoshioka J, Lee RT.
    The interaction of thioredoxin with Txnip. Evidence for formation of a mixed disulfide by disulfide exchange.
    J Biol Chem. 2006 Aug 4;281(31):21884-91
    pmid: 16766796
  • Fujibe T, Saji H, Watahiki MK, Yamamoto KT.
    Overexpression of the RADICAL-INDUCED CELL DEATH1 (RCD1) gene of Arabidopsis causes weak rcd1 phenotype with compromised oxidative-stress responses.
    Biosci Biotechnol Biochem. 2006 Aug;70(8):1827-31
    pmid: 16926493
  • Hayakawa T, Kudo T, Ito T, Takahashi N, Yamaya T.
    ACT domain repeat protein 7, ACR7, interacts with a chaperone HSP18.0-CII in rice nuclei.
    Plant Cell Physiol. 2006 Jul;47(7):891-904
    pmid: 16720649
  • Du C, Ge B, Liu Z, Fu K, Chan WC, McKeithan TW.
    PCR-based generation of shRNA libraries from cDNAs.
    BMC Biotechnol. 2006 Jun 21;6:28
    pmid: 16790063
  • Wilmann PG, Battad J, Petersen J, Wilce MC, Dove S, Devenish RJ, Prescott M, Rossjohn J.
    The 2.1A crystal structure of copGFP, a representative member of the copepod clade within the green fluorescent protein superfamily.
    J Mol Biol. 2006 Jun 16;359(4):890-900
    pmid: 16697009
  • Cohen EE, Lingen MW, Zhu B, Zhu H, Straza MW, Pierce C, Martin LE, Rosner MR.
    Protein kinase C zeta mediates epidermal growth factor-induced growth of head and neck tumor cells by regulating mitogen-activated protein kinase.
    Cancer Res. 2006 Jun 15;66(12):6296-303
    pmid: 16778206
  • Henderson JN, Remington SJ.
    The kindling fluorescent protein: a transient photoswitchable marker.
    Physiology (Bethesda). 2006 Jun;21:162-70.
    pmid: 16714474
  • Xu YX, Zhu ZY, Lo LC, Wang CM, Lin G, Feng F, Yue GH.
    Characterization of two parvalbumin genes and their association with growth traits in Asian seabass (Lates calcarifer).
    Anim Genet. 2006 Jun;37(3):266-8
    pmid: 16734689
  • Gur'ianova OA, Makhanov M, Chenchik AA, Chumakov PM, Frolova EI.
    Genome-wide lentivector-based pooled shRNA library optimization.
    Mol Biol (Mosk). 2006 May-Jun;40(3):448-59 (in Russian)
    pmid: 16813164
  • Abe Y, Takeuchi T, Imai Y, Murase R, Kamei Y, Fujibuchi T, Matsumoto S, Ueda N, Ogasawara M, Shigemoto K, Kito K.
    A Small Ras-like protein Ray/Rab1c modulates the p53-regulating activity of PRPK.
    Biochem Biophys Res Commun. 2006 May 26;344(1):377-85
    pmid: 16600182
  • Efimov VA, Birikh KR, Staroverov DB, Lukyanov SA, Tereshina MB, Zaraisky AG, Chakhmakhcheva OG.
    Hydroxyproline-based DNA mimics provide an efficient gene silencing in vitro and in vivo.
    Nucleic Acids Res. 2006 May 2;34(8):2247-57
    pmid: 16670431
  • Anisimova VE, Rebrikov DV, Zhulidov PA, Staroverov DB, Lukyanov SA, Shcheglov AS.
    Renaturation, activation, and practical use of recombinant duplex-specific nuclease from Kamchatka crab.
    Biochemistry (Mosc). 2006 May;71(5):513-9
    pmid: 16732729
  • Suzuki S, Kanno M, Fujiwara T, Sugiyama H, Yokoyama A, Takahashi H, Tanaka J.
    Molecular cloning and characterization of Nop25, a novel nucleolar RNA binding protein, highly conserved in vertebrate species.
    Exp Cell Res. 2006 Apr 15;312(7):1031-41
    pmid: 16430885
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    The fluorescent toolbox for assessing protein location and function.
    Science. 2006 Apr 14;312(5771):217-24
    pmid: 16614209
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    Genetically encoded fluorescent indicator for intracellular hydrogen peroxide.
    Nat Methods. 2006 Apr;3(4):281-6
    pmid: 16554833
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    Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light.
    Nat Biotechnol. 2006 Apr;24(4):461-5
    pmid: 16550175
  • Miracle A, Ankley G, Lattier D.
    Expression of two vitellogenin genes (vg1 and vg3) in fathead minnow (Pimephales promelas) liver in response to exposure to steroidal estrogens and androgens.
    Ecotoxicol Environ Saf. 2006 Mar;63(3):337-42
    pmid: 16464498
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    Genes differentially expressed in oropharyngeal tonsils and mandibular lymph nodes of tuberculous and nontuberculous European wild boars naturally exposed to Mycobacterium bovis.
    FEMS Immunol Med Microbiol. 2006 Mar;46(2):298-312
    pmid: 16487312
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    Photoswitchable cyan fluorescent protein as a FRET donor.
    Microsc Res Tech. 2006 Mar;69(3):207-9
    pmid: 16538627
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    Decoding the fine-scale structure of a breast cancer genome and transcriptome.
    Genome Res. 2006 Mar;16(3):394-404
    pmid: 16461635
  • Tateyama S, Horisawa K, Takashima H, Miyamoto-Sato E, Doi N, Yanagawa H.
    Affinity selection of DNA-binding protein complexes using mRNA display.
    Nucleic Acids Res. 2006 Feb 14;34(3):e27
    pmid: 16478713
  • Simon A, Gl?ckner G, Felder M, Melkonian M, Becker B
    EST analysis of the scaly green flagellate Mesostigma viride (Streptophyta): implications for the evolution of green plants (Viridiplantae).
    BMC Plant Biol. 2006 Feb 13;6:2
    pmid: 16476162
  • McBeath AJ, Collet B, Paley R, Duraffour S, Aspehaug V, Biering E, Secombes CJ, Snow M.
    Identification of an interferon antagonist protein encoded by segment 7 of infectious salmon anaemia virus.
    Virus Res. 2006 Feb;115(2):176-84
    pmid: 16202469
  • Sandhu SK, Jagdale GB, Hogenhout SA, Grewal PS.
    Comparative analysis of the expressed genome of the infective juvenile entomopathogenic nematode, Heterorhabditis bacteriophora.
    Mol Biochem Parasitol. 2006 Feb;145(2):239-44
    pmid: 16414368
  • Rumi M, Ishihara S, Aziz M, Kazumori H, Ishimura N, Yuki T, Kadota C, Kadowaki Y, Kinoshita Y.
    RNA polymerase II mediated transcription from the polymerase III promoters in short hairpin RNA expression vector.
    Biochem Biophys Res Commun. 2006 Jan 13;339(2):540-7
    pmid: 16300730
  • Bulina ME, Chudakov DM, Britanova OV, Yanushevich YG, Staroverov DB, Chepurnykh TV, Merzlyak EM, Shkrob MA, Lukyanov S, Lukyanov KA.
    A genetically encoded photosensitizer.
    Nat Biotechnol. 2006 Jan;24(1):95-9
    pmid: 16369538
  • Deng W, Zhu X, Skogerbo G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, He H, Cui Y, Wang Y, Bu D, Chen R.
    Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.
    Genome Res. 2006 Jan;16(1):20-9
    pmid: 16344563
  • Bulina ME, Lukyanov KA, Britanova OV, Onichtchouk D, Lukyanov S, Chudakov DM.
    Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed.
    Nat Protoc. 2006;1(2):947-53
    pmid: 17406328
  • Gamas P, Debelle F., Berges H, Godiard L, Niebel A, Journet E, Gouzy J.
    Medicago truncatula cDNA and genomic libraries.
    In: The Medicago truncatula handbook. Mathesius U, Journet EP, Sumner LW (eds). ISBN 0-9754303-1-9. 2006; http://www.noble.org/MedicagoHandbook/
  • Lukyanov KA, Chudakov DM, Fradkov AF, Labas YA, Matz MV, Lukyanov S.
    Discovery and properties of GFP-like proteins from nonbioluminescent anthozoa.
    Methods Biochem Anal. 2006;47:121-38
    pmid: 16335712
  • Lukyanov KA, Chudakov DM, Fradkov AF, Labas YA, Matz MV, Lukyanov SA.
    Discovery and properties of GFP-like proteins from non-bioluminescent Anthozoa.
    In: Green fluorescent protein: properties and applications. Chalfie M, Kain S, (Eds). Willey-Liss, New York ISBN-13: 978-0-471-73682-0. 2006;121-38 http://books.google.com
  • Xia J, Kim SH, Macmillan S, Truant R.
    Practical three color live cell imaging by widefield microscopy.
    Biol Proced Online. 2006;8:63-8
    pmid: 16909160
2005
  • Chudakov DM, Lukyanov S, Lukyanov KA.
    Fluorescent proteins as a toolkit for in vivo imaging.
    Trends Biotechnol. 2005 Dec;23(12):605-13
    pmid: 16269193
  • Shaner NC, Steinbach PA, Tsien RY.
    A guide to choosing fluorescent proteins.
    Nat Methods. 2005 Dec;2(12):905-9
    pmid: 16299475
  • Altshuler IM, Zhulidov PA, Bogdanova EA, Mudrik NN, Shagin DA.
    Application of the duplex-specific nuclease preference method to the analysis of point mutations in human genes.
    Bioorg Khim. 2005 Nov-Dec;31(6):627-36 http://www.springerlink.com
    pmid: 16363136
  • Hasdemir B, Fitzgerald DJ, Prior IA, Tepikin AV, Burgoyne RD.
    Traffic of Kv4 K+ channels mediated by KChIP1 is via a novel post-ER vesicular pathway.
    J Cell Biol. 2005 Nov 7;171(3):459-69
    pmid: 16260497
  • Lukyanov KA, Chudakov DM, Lukyanov S, Verkhusha VV.
    Innovation: Photoactivatable fluorescent proteins.
    Nat Rev Mol Cell Biol. 2005 Nov;6(11):885-91
    pmid: 16167053
  • Melton L.
    Imaging: the big picture.
    Nature. 2005 Sep 29;437(7059):775-9
    pmid: 16193058
  • Zhu JX, Goldoni S, Bix G, Owens RT, McQuillan DJ, Reed CC, Iozzo RV.
    Decorin evokes protracted internalization and degradation of the epidermal growth factor receptor via caveolar endocytosis.
    J Biol Chem. 2005 Sep 16;280(37):32468-79
    pmid: 15994311
  • Ozalp C, Szczesna-Skorupa E, Kemper B.
    Bimolecular fluorescence complementation analysis of cytochrome p450 2c2, 2e1, and NADPH-cytochrome p450 reductase molecular interactions in living cells.
    Drug Metab Dispos. 2005 Sep;33(9):1382-90
    pmid: 15980100
  • Wang Z, Chua HK, Gusti AA, He F, Fenner B, Manopo I, Wang H, Kwang J.
    RING-H2 protein WSSV249 from white spot syndrome virus sequesters a shrimp ubiquitin-conjugating enzyme, PvUbc, for viral pathogenesis.
    J Virol. 2005 Jul;79(14):8764-72
    pmid: 15994770
  • Nguyen B, Bowers RM, Wahlund TM, Read BA.
    Suppressive subtractive hybridization of and differences in gene expression content of calcifying and noncalcifying cultures of Emiliania huxleyi strain 1516.
    Appl Environ Microbiol. 2005 May;71(5):2564-75
    pmid: 15870347
  • Quillin ML, Anstrom DM, Shu X, O'Leary S, Kallio K, Chudakov DM, Remington SJ.
    Kindling fluorescent protein from Anemonia sulcata: dark-state structure at 1.38 A resolution.
    Biochemistry. 2005 Apr 19;44(15):5774-87
    pmid: 15823036
  • Abdeeva IA, Komakhin RA, Musiichuk KA, Goldenkova IV.
    The development of yeast vector system for study of regulational functions of eukaryotic noncoding elements.
    Mol Biol (Mosk). 2005 Mar-Apr;39(2):207-13 (in Russian)
    pmid: 15856943
  • Zhulidov PA, Bogdanova EA, Shcheglov AS, Shagina IA, Wagner LL, Khazpekov GL, Kozhemyako VV, Lukyanov SA, Shagin DA.
    A method for the preparation of normalized cDNA libraries enriched with full-length sequences.
    Bioorg Khim. 2005 Mar-Apr;31(2):186-94 http://www.springerlink.com
    pmid: 15889793
  • Yanushevich YG, Shagin DA, Fradkov AF, Shakhbazov KS, Barsova EV, Gurskaya NG, Labas YA, Matz MV, Lukyanov KA, Lukyanov SA.
    Spectral diversity among the members of the family of Green Fluorescent Protein in hydroid jellyfish (Cnidaria, Hydrozoa).
    Bioorg Khim. 2005 Jan-Feb;31(1):49-53 http://www.springerlink.com
    pmid: 15787213
  • Wilmann PG, Petersen J, Devenish RJ, Prescott M, Rossjohn J.
    Variations on the GFP chromophore: A polypeptide fragmentation within the chromophore revealed in the 2.1-A crystal structure of a nonfluorescent chromoprotein from Anemonia sulcata.
    J Biol Chem. 2005 Jan 28;280(4):2401-4
    pmid: 15542608
  • Diatchenko L, Slade GD, Nackley AG, Bhalang K, Sigurdsson A, Belfer I, Goldman D, Xu K, Shabalina SA, Shagin D, Max MB, Makarov SS, Maixner W.
    Genetic basis for individual variations in pain perception and the development of a chronic pain condition.
    Hum Mol Genet. 2005 Jan 1;14(1):135-43
    pmid: 15537663
  • Peyker A, Rocks O, Bastiaens PI.
    Imaging activation of two Ras isoforms simultaneously in a single cell.
    Chembiochem. 2005 Jan;6(1):78-85
    pmid: 15637661
  • Chudakov DM, and Lukyanov KA.
    Using photoactivatable GFPs to study protein dynamics and function.
    In: Jorde LB, Little PFR, Dunn MJ and Subramaniam S. (Eds), Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. John Wiley & Sons Ltd: Chichester. 2005;2129-37 http://books.google.com
  • Comley J.
    HIGH CONTENT SCREENING emerging importance of novel reagents/probes and pathway analysis.
    Drug Discovery World Summer. 2005;31-53 http://clients.parabolasoft.co.uk
2004
  • Lu L, Kwang J.
    Identification of a novel shrimp protein phosphatase and its association with latency-related ORF427 of white spot syndrome virus.
    FEBS Lett. 2004 Nov 5;577(1-2):141-6
    pmid: 15527775
  • Chudakov DM, Verkhusha VV, Staroverov DB, Souslova EA, Lukyanov S, Lukyanov KA.
    Photoswitchable cyan fluorescent protein for protein tracking.
    Nat Biotechnol. 2004 Nov;22(11):1435-9
    pmid: 15502815
  • Gelfand M.
    Doing Science in Uncertain Times.
    PLoS Biol. 2004 Jul;2(7):E214
    pmid: 15252457
  • Shagin DA, Barsova EV, Yanushevich YG, Fradkov AF, Lukyanov KA, Labas YA, Semenova TN, Ugalde JA, Meyers A, Nunez JM, Widder EA, Lukyanov SA, Matz MV.
    GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity.
    Mol Biol Evol. 2004 May;21(5):841-50
    pmid: 14963095
  • Zhulidov PA, Bogdanova EA, Shcheglov AS, Vagner LL, Khaspekov GL, Kozhemyako VB, Matz MV, Meleshkevitch E, Moroz LL, Lukyanov SA, Shagin DA.
    Simple cDNA normalization using kamchatka crab duplex-specific nuclease.
    Nucleic Acids Res. 2004 Feb 18;32(3):e37
    pmid: 14973331
  • Hawley TS, Herbert DJ, Eaker SS, Hawley RG.
    Multiparameter flow cytometry of fluorescent protein reporters.
    Methods Mol Biol. 2004;263:219-38
    pmid: 14976369
  • Rebrikov DV, Desai SM, Siebert PD, Lukyanov SA.
    Suppression subtractive hybridization.
    Methods Mol Biol. 2004;258:107-34
    pmid: 14970460
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