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References citing photoactivatable fluorescent proteins:

  • Khrenova M, Topol I, Collins J, Nemukhin A.
    Estimating orientation factors in the FRET theory of fluorescent proteins: the TagRFP-KFP pair and beyond.
    Biophys J. 2015 Jan 6;108(1):126-32 doi: 10.1016/j.bpj.2014.11.1859
    pmid: 25564859
  • Bonekamp NA, Islinger M, Lázaro MG, Schrader M.
    Cytochemical detection of peroxisomes and mitochondria.
    Methods Mol Biol. 2013;931:467-82 doi: 10.1007/978-1-62703-056-4_24
    pmid: 23027018
  • Kopek BG, Shtengel G, Grimm JB, Clayton DA, Hess HF.
    Correlative photoactivated localization and scanning electron microscopy.
    PLoS One. 2013 Oct 25;8(10):e77209 doi: 10.1371/journal.pone.0077209
    pmid: 24204771
  • Koga H, Martinez-Vicente M, Macian F, Verkhusha VV, Cuervo AM.
    A photoconvertible fluorescent reporter to track chaperone-mediated autophagy.
    Nat Commun. 2011 Jul 12;2:386 doi: 10.1038/ncomms1393
    pmid: 21750540
  • Owen DM, Rentero C, Rossy J, Magenau A, Williamson D, Rodriguez M, Gaus K.
    PALM imaging and cluster analysis of protein heterogeneity at the cell surface.
    J Biophotonics. 2010 Jul;3(7):446-54 doi: 10.1002/jbio.200900089
    pmid: 20148419
  • Rusanov AL, Ivashina TV, Vinokurov LM, Fiks II, Orlova AG, Turchin IV, Meerovich IG, Zherdeva VV, Savitsky AP.
    Lifetime imaging of FRET between red fluorescent proteins.
    J Biophotonics. 2010 Dec;3(12):774-83 doi: 10.1002/jbio.201000065
    pmid: 20925107
  • Adam V, Nienhaus K, Bourgeois D, Nienhaus GU.
    Structural basis of enhanced photoconversion yield in green fluorescent protein-like protein Dendra2.
    Biochemistry. 2009 Jun 9;48(22):4905-15 doi: 10.1021/bi900383a
    pmid: 19371086
  • Arrenberg AB, Del Bene F, Baier H.
    Optical control of zebrafish behavior with halorhodopsin.
    Proc Natl Acad Sci U S A. 2009 Oct 20;106(42):17968-73 doi: 10.1073/pnas.0906252106
    pmid: 19805086
  • Cvackova Z, Masata M, Stanek D, Fidlerova H, Raska I.
    Chromatin position in human HepG2 cells: although being non-random, significantly changed in daughter cells.
    J Struct Biol. 2009 Feb;165(2):107-17 doi: 10.1016/j.jsb.2008.10.007
    pmid: 19056497
  • Falk MM, Baker SM, Gumpert AM, Segretain D, Buckheit RW 3rd.
    Gap junction turnover is achieved by the internalization of small endocytic double-membrane vesicles.
    Mol Biol Cell. 2009 Jul;20(14):3342-52 doi: 10.1091/mbc.E09-04-0288
    pmid: 19458184
  • Flynn KC, Pak CW, Shaw AE, Bradke F, Bamburg JR.
    Growth cone-like waves transport actin and promote axonogenesis and neurite branching.
    Dev Neurobiol. 2009 Oct;69(12):761-79 doi: 10.1002/dneu.20734
    pmid: 19513994
  • Gligorijevic B, Kedrin D, Segall JE, Condeelis J, van Rheenen J.
    Dendra2 photoswitching through the Mammary Imaging Window.
    J Vis Exp. 2009 Jun 5;(28) doi: 10.3791/1278
    pmid: 19578330
  • Hess ST, Gould TJ, Gunewardene M, Bewersdorf J, Mason MD.
    Ultrahigh resolution imaging of biomolecules by fluorescence photoactivation localization microscopy.
    Methods Mol Biol. 2009;544:483-522 doi: 10.1007/978-1-59745-483-4_32
    pmid: 19488720
  • Huisken J, Stainier DY.
    Selective plane illumination microscopy techniques in developmental biology.
    Development. 2009 Jun;136(12):1963-75 doi: 10.1242/dev.022426
    pmid: 19465594
  • Korte M.
    Neuroscience. Bridging the gap and staying local.
    Science. 2009 Jun 19;324(5934):1527-8. doi: 10.1126/science.1176484
    pmid: 19541987
  • Kulesa PM, Stark DA, Steen J, Lansford R, Kasemeier-Kulesa JC.
    Watching the assembly of an organ a single cell at a time using confocal multi-position photoactivation and multi-time acquisition.
    Organogenesis. 2009 Oct;5(4):238-47
    pmid: 20539744
  • Kural C, Nonet ML, Selvin PR.
    FIONA on Caenorhabditis elegans.
    Biochemistry. 2009 Jun 9;48(22):4663-5 doi: 10.1021/bi8023477
    pmid: 19397310
  • Liu X, Weaver D, Shirihai O, Hajnóczky G.
    Mitochondrial 'kiss-and-run': interplay between mitochondrial motility and fusion-fission dynamics.
    EMBO J. 2009 Oct 21;28(20):3074-89 doi: 10.1016/j.ab.2011.01.034
    pmid: 19745815
  • Makio T, Stanton LH, Lin CC, Goldfarb DS, Weis K, Wozniak RW.
    The nucleoporins Nup170p and Nup157p are essential for nuclear pore complex assembly.
    J Cell Biol. 2009 May 4;185(3):459-73. doi: 10.1083/jcb.200810029
    pmid: 19414608
  • Martin K, Kopperud K, Chakrabarty R, Banerjee R, Brooks R, Goodin MM.
    Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta.
    Plant J. 2009 Jul;59(1):150-62 doi: 10.1111/j.1365-313X.2009.03850.x
    pmid: 19309457
  • Nakagawa T, Ishiguro S, Kimura T.
    Gateway vectors for plant transformation.
    Plant Biotechnology. 2009;26:275-84 http://www.wdc-jp.biz
  • Nowotschin S, Eakin GS, Hadjantonakis AK.
    Live-imaging fluorescent proteins in mouse embryos: multi-dimensional, multi-spectral perspectives.
    Trends Biotechnol. 2009 May;27(5):266-76 doi: 10.1016/j.tibtech.2009.02.006
    pmid: 19339068
  • Nowotschin S, Hadjantonakis AK.
    Use of KikGR a photoconvertible green-to-red fluorescent protein for cell labeling and lineage analysis in ES cells and mouse embryos.
    BMC Dev Biol. 2009 Sep 9;9:49 doi: 10.1186/1471-213X-9-49
    pmid: 19740427
  • Onischenko E, Stanton LH, Madrid AS, Kieselbach T, Weis K.
    Role of the Ndc1 interaction network in yeast nuclear pore complex assembly and maintenance.
    J Cell Biol. 2009 May 4;185(3):475-91 doi: 10.1083/jcb.200810030
    pmid: 19414609
  • Rexach M.
    Piecing together nuclear pore complex assembly during interphase.
    J Cell Biol. 2009 May 4;185(3):377-9. doi: 10.1083/jcb.200904022
    pmid: 19414605
  • Samarkina ON, Popova AG, Gvozdik EY, Chkalina AV, Zvyagin IV, Rylova YV, Rudenko NV, Lusta KA, Kelmanson IV, Gorokhovatsky AY, Vinokurov LM.
    Universal and rapid method for purification of GFP-like proteins by the ethanol extraction.
    Protein Expr Purif. 2009 May;65(1):108-13 doi: 10.1016/j.pep.2008.11.008
    pmid: 19084068
  • Tsutsumi R, Fukata Y, Noritake J, Iwanaga T, Perez F, Fukata M.
    Identification of G protein alpha subunit-palmitoylating enzyme.
    Mol Cell Biol. 2009 Jan;29(2):435-47 doi: 10.1128/MCB.01144-08
    pmid: 19001095
  • Wang DO, Kim SM, Zhao Y, Hwang H, Miura SK, Sossin WS, Martin KC.
    Synapse- and stimulus-specific local translation during long-term neuronal plasticity.
    Science. 2009 Jun 19;324(5934):1536-40 doi: 10.1126/science.1173205
    pmid: 19443737
  • Wang X, Su B, Lee HG, Li X, Perry G, Smith MA, Zhu X.
    Impaired balance of mitochondrial fission and fusion in Alzheimer's disease.
    J Neurosci. 2009 Jul 15;29(28):9090-103 doi: 10.1523/JNEUROSCI.1357-09.2009
    pmid: 19605646
  • Zakharova MY, Kuznetsov NA, Dubiley SA, Kozyr AV, Fedorova OS, Chudakov DM, Knorre DG, Shemyakin IG, Gabibov AG, Kolesnikov AV.
    Substrate recognition of anthrax lethal factor examined by combinatorial and pre-steady-state kinetic approaches.
    J Biol Chem. 2009 Jul 3;284(27):17902-13 doi: 10.1074/jbc.M807510200
    pmid: 19359249
  • Adam V, Lelimousin M, Boehme S, Desfonds G, Nienhaus K, Field MJ, Wiedenmann J, McSweeney S, Nienhaus GU, Bourgeois D.
    Structural characterization of IrisFP, an optical highlighter undergoing multiple photo-induced transformations.
    Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18343-8 doi: 10.1073/pnas.0805949105
    pmid: 19017808
  • Baker K, Holtzman NG, Burdine RD.
    Direct and indirect roles for Nodal signaling in two axis conversions during asymmetric morphogenesis of the zebrafish heart.
    Proc Natl Acad Sci U S A. 2008 Sep 16;105(37):13924-9 doi: 10.1073/pnas.0802159105
    pmid: 18784369
  • Baltrusch S, Lenzen S.
    Monitoring of glucose-regulated single insulin secretory granule movement by selective photoactivation.
    Diabetologia. 2008 Jun;51(6):989-96 doi: 10.1007/s00125-008-0979-y
    pmid: 18389213
  • Belogurov AA Jr, Kurkova IN, Friboulet A, Thomas D, Misikov VK, Zakharova MY, Suchkov SV, Kotov SV, Alehin AI, Avalle B, Souslova EA, Morse HC 3rd, Gabibov AG, Ponomarenko NA.
    Recognition and degradation of myelin basic protein peptides by serum autoantibodies: novel biomarker for multiple sclerosis.
    J Immunol. 2008 Jan 15;180(2):1258-67
    pmid: 18178866
  • Bhattacharyya S, Kulesa PM, Fraser SE.
    Vital labeling of embryonic cells using fluorescent dyes and proteins.
    Methods Cell Biol. 2008;87:187-210 doi: 10.1016/S0091-679X(08)00210-0
    pmid: 18485298
  • Gould TJ, Gunewardene MS, Gudheti MV, Verkhusha VV, Yin SR, Gosse JA, Hess ST.
    Nanoscale imaging of molecular positions and anisotropies.
    Nat Methods. 2008 Dec;5(12):1027-30 doi: 10.1038/nmeth.1271
    pmid: 19011626
  • Held MA, Boulaflous A, Brandizzi F.
    Advances in fluorescent protein-based imaging for the analysis of plant endomembranes.
    Plant Physiol. 2008 Aug;147(4):1469-81 doi: 10.1104/pp.108.120147
    pmid: 18678739
  • Hirayama S, Yamazaki Y, Kitamura A, Oda Y, Morito D, Okawa K, Kimura H, Cyr DM, Kubota H, Nagata K.
    MKKS Is a Centrosome-shuttling Protein Degraded by Disease-causing Mutations via CHIP-mediated Ubiquitination.
    Mol Biol Cell. 2008 Mar;19(3):899-911
    pmid: 18094050
  • Holmstrom TH, Mialon A, Kallio M, Nymalm Y, Mannermaa L, Holm T, Johansson H, Black E, Gillespie D, Salminen TA, Langel U, Valdez BC, Westermarck J.
    c-Jun Supports Ribosomal RNA Processing and Nucleolar Localization of RNA Helicase DDX21.
    J Biol Chem. 2008 Mar 14;283(11):7046-53 doi: 10.1074/jbc.M709613200
    pmid: 18180292
  • Lai KO, Zhao Y, Ch'ng TH, Martin KC.
    Importin-mediated retrograde transport of CREB2 from distal processes to the nucleus in neurons.
    Proc Natl Acad Sci U S A. 2008 Nov 4;105(44):17175-80 doi: 10.1073/pnas.0803906105
    pmid: 18957537
  • Lin MZ, Glenn JS, Tsien RY.
    A drug-controllable tag for visualizing newly synthesized proteins in cells and whole animals.
    Proc Natl Acad Sci U S A. 2008 Jun 3;105(22):7744-9. doi: 10.1073/pnas.0803060105
    pmid: 18511556
  • Stark DA, Kasemeier-Kulesa JC, Kulesa PM.
    Photoactivation cell labeling for cell tracing in avian development.
    CSH Protocols. 2008; pdb.prot4975
  • Tachibana K, Hara M, Hattori Y, Kishimoto T.
    Cyclin B-cdk1 controls pronuclear union in interphase.
    Curr Biol. 2008 Sep 9;18(17):1308-13 doi: 10.1016/j.cub.2008.07.077
    pmid: 18701285
  • Wang X, Su B, Siedlak SL, Moreira PI, Fujioka H, Wang Y, Casadesus G, Zhu X.
    Amyloid-beta overproduction causes abnormal mitochondrial dynamics via differential modulation of mitochondrial fission/fusion proteins.
    Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19318-23 doi: 10.1073/pnas.0804871105
    pmid: 19050078
  • Witze ES, Litman ES, Argast GM, Moon RT, Ahn NG.
    Wnt5a control of cell polarity and directional movement by polarized redistribution of adhesion receptors.
    Science. 2008 Apr 18;320(5874):365-9. doi: 10.1126/science.1151250
    pmid: 18420933
  • Baltrusch S, Lenzen S.
    Novel insights into the regulation of the bound and diffusible glucokinase in MIN6 β-cells.
    Diabetes. 2007 May;56(5):1305-15
    pmid: 17287461
  • Chudakov DM, Lukyanov S, Lukyanov KA.
    Tracking intracellular protein movements using photoswitchable fluorescent proteins PS-CFP2 and Dendra2.
    Nat Protoc. 2007;2(8):2024-32
    pmid: 17703215
  • Chudakov DM, Lukyanov S, Lukyanov KA.
    Using photoactivatable fluorescent protein Dendra2 to track protein movement.
    Biotechniques. 2007 May;42(5):553, 555, 557 passim
    pmid: 17515192
  • Jollivet F, Raposo G, Dimitrov A, Sougrat R, Goud B, Perez F.
    Analysis of de novo Golgi complex formation after enzyme-based inactivation.
    Mol Biol Cell. 2007 Nov;18(11):4637-47
    pmid: 17855505
  • Mocz G.
    Fluorescent proteins and their use in marine biosciences, biotechnology, and proteomics.
    Mar Biotechnol (NY). 2007 May-Jun;9(3):305-28
    pmid: 17372780
  • Morimoto A, Matsunaga S, Kurihara D, Fukui K.
    Visualization of mitotic HeLa cells by advanced polarized light microscopy.
    Micron. 2007 May 10;
    pmid: 17560789
  • Olenych SG, Claxton NS, Ottenberg GK, Davidson MW.
    The fluorescent protein color palette.
    Curr Protoc Cell Biol. 2007 Sep;Chapter 21:Unit 21.5 doi: 10.1002/0471143030.cb2105s36
    pmid: 18228502
  • Shaner NC, Patterson GH, Davidson MW.
    Advances in fluorescent protein technology.
    J Cell Sci. 2007 Dec 15;120(Pt 24):4247-60
    pmid: 18057027
  • Shroff H, Galbraith CG, Galbraith JA, White H, Gillette J, Olenych S, Davidson MW, Betzig E.
    Dual-color superresolution imaging of genetically expressed probes within individual adhesion complexes.
    Proc Natl Acad Sci U S A. 2007 Dec 18;104(51):20308-13
    pmid: 18077327
  • Smith C.
    Keeping tabs on fluorescent tags.
    Nat Methods. 2007;4(9):755-760 http://www.nature.com
  • Stark DA, Kulesa PM.
    An in vivo comparison of photoactivatable fluorescent proteins in an avian embryo model.
    Dev Dyn. 2007 Jun;236(6):1583-94
    pmid: 17486622
  • Zhang L, Gurskaya NG, Merzlyak EM, Staroverov DB, Mudrik NN, Samarkina ON, Vinokurov LM, Lukyanov S, Lukyanov KA.
    Method for real-time monitoring of protein degradation at the single cell level.
    Biotechniques. 2007 Apr;42(4):446, 448, 450
    pmid: 17489230
  • Chudakov DM, Chepurnykh TV, Belousov VV, Lukyanov S, Lukyanov KA.
    Fast and precise protein tracking using repeated reversible photoactivation.
    Traffic. 2006 Oct;7(10):1304-10
    pmid: 16889652
  • Gurskaya NG, Verkhusha VV, Shcheglov AS, Staroverov DB, Chepurnykh TV, Fradkov AF, Lukyanov S, Lukyanov KA.
    Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light.
    Nat Biotechnol. 2006 Apr;24(4):461-5
    pmid: 16550175
  • Henderson JN, Remington SJ.
    The kindling fluorescent protein: a transient photoswitchable marker.
    Physiology (Bethesda). 2006 Jun;21:162-70.
    pmid: 16714474
  • Lukyanov KA, Chudakov DM, Fradkov AF, Labas YA, Matz MV, Lukyanov S.
    Discovery and properties of GFP-like proteins from nonbioluminescent anthozoa.
    Methods Biochem Anal. 2006;47:121-38
    pmid: 16335712
  • Lukyanov KA, Chudakov DM, Fradkov AF, Labas YA, Matz MV, Lukyanov SA.
    Discovery and properties of GFP-like proteins from non-bioluminescent Anthozoa.
    In: Green fluorescent protein: properties and applications. Chalfie M, Kain S, (Eds). Willey-Liss, New York ISBN-13: 978-0-471-73682-0. 2006;121-38 http://books.google.com
  • Souslova EA, Chudakov DM.
    Photoswitchable cyan fluorescent protein as a FRET donor.
    Microsc Res Tech. 2006 Mar;69(3):207-9
    pmid: 16538627
  • Wolff M, Wiedenmann J, Nienhaus GU, Valler M, Heilker R.
    Novel fluorescent proteins for high-content screening.
    Drug Discov Today. 2006 Dec;11(23-24):1054-60
    pmid: 17129823
  • Xia J, Kim SH, Macmillan S, Truant R.
    Practical three color live cell imaging by widefield microscopy.
    Biol Proced Online. 2006;8:63-8
    pmid: 16909160
  • Chudakov DM, and Lukyanov KA.
    Using photoactivatable GFPs to study protein dynamics and function.
    In: Jorde LB, Little PFR, Dunn MJ and Subramaniam S. (Eds), Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. John Wiley & Sons Ltd: Chichester. 2005;2129-37 http://books.google.com
  • Chudakov DM, Lukyanov S, Lukyanov KA.
    Fluorescent proteins as a toolkit for in vivo imaging.
    Trends Biotechnol. 2005 Dec;23(12):605-13
    pmid: 16269193
  • Comley J.
    HIGH CONTENT SCREENING emerging importance of novel reagents/probes and pathway analysis.
    Drug Discovery World Summer. 2005;31-53 http://clients.parabolasoft.co.uk
  • Lukyanov KA, Chudakov DM, Lukyanov S, Verkhusha VV.
    Innovation: Photoactivatable fluorescent proteins.
    Nat Rev Mol Cell Biol. 2005 Nov;6(11):885-91
    pmid: 16167053
  • Melton L.
    Imaging: the big picture.
    Nature. 2005 Sep 29;437(7059):775-9
    pmid: 16193058
  • Quillin ML, Anstrom DM, Shu X, O'Leary S, Kallio K, Chudakov DM, Remington SJ.
    Kindling fluorescent protein from Anemonia sulcata: dark-state structure at 1.38 A resolution.
    Biochemistry. 2005 Apr 19;44(15):5774-87
    pmid: 15823036
  • Wilmann PG, Petersen J, Devenish RJ, Prescott M, Rossjohn J.
    Variations on the GFP chromophore: A polypeptide fragmentation within the chromophore revealed in the 2.1-A crystal structure of a nonfluorescent chromoprotein from Anemonia sulcata.
    J Biol Chem. 2005 Jan 28;280(4):2401-4
    pmid: 15542608
  • Chudakov DM, Verkhusha VV, Staroverov DB, Souslova EA, Lukyanov S, Lukyanov KA.
    Photoswitchable cyan fluorescent protein for protein tracking.
    Nat Biotechnol. 2004 Nov;22(11):1435-9
    pmid: 15502815
  • Chudakov DM, Belousov VV, Zaraisky AG, Novoselov VV, Staroverov DB, Zorov DB, Lukyanov S, Lukyanov KA.
    Kindling fluorescent proteins for precise in vivo photolabeling.
    Nat Biotechnol. 2003 Feb;21(2):191-4
    pmid: 12524551
  • Chudakov DM, Feofanov AV, Mudrik NN, Lukyanov S, Lukyanov KA.
    Chromophore environment provides clue to "kindling fluorescent protein" riddle.
    J Biol Chem. 2003 Feb 28;278(9):7215-9
    pmid: 12496281
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