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References citing Duplex-specific nuclease:
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Simon S, Strauss S, von Haeseler A, Hadrys H.
A phylogenomic approach to resolve the basal pterygote divergence.
Mol Biol Evol. 2009 Dec;26(12):2719-30
pmid: 19713325
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Birol I, Jackman SD, Nielsen C, Qian JQ, Varhol R, Stazyk G, Morin RD, Zhao Y, Hirst M, Schein JE, Horsman DE, Connors JM, Gascoyne RD, Marra MA, Jones SJ.
De novo Transcriptome Assembly with ABySS.
Bioinformatics. 2009 Nov 1;25(21):2872-7
pmid: 19528083
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Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW.
Whole genome amplification and de novo assembly of single bacterial cells.
PLoS One. 2009 Sep 2;4(9):e6864
pmid: 19724646
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Zhao Y, Sfeir AJ, Zou Y, Buseman CM, Chow TT, Shay JW, Wright WE.
Telomere extension occurs at most chromosome ends and is uncoupled from fill-in in human cancer cells.
Cell. 2009 Aug 7;138(3):463-75
pmid: 19665970
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Zhou B, Dong Q, Ma R, Chen Y, Yang J, Sun LZ, Huang C.
Rapid isolation of highly pure single-stranded DNA from phagemids.
Anal Biochem. 2009 Jun 15;389(2):177-9
pmid: 19348781
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Lamm N, Ordan E, Shponkin R, Richler C, Aker M, Tzfati Y.
Diminished telomeric 3' overhangs are associated with telomere dysfunction in Hoyeraal-Hreidarsson syndrome.
PLoS One. 2009 May 22;4(5):e5666
pmid: 19461895
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Bai X, Adams BJ, Ciche TA, Clifton S, Gaugler R, Hogenhout SA, Spieth J, Sternberg PW, Wilson RK, Grewal PS.
Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1.
BMC Genomics. 2009 Apr 30;10:205
pmid: 19405965
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Whetten RW, Sofia VA, Frampton J.
Polymerase chain reaction preparation of template for massively parallel pyrosequencing.
J Biomol Tech. 2009 Apr;20(2):128-34
pmid: 19503624
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Yue GH, Zhu ZY, Wang CM, Xia JH.
A simple and efficient method for isolating polymorphic microsatellites from cDNA.
BMC Genomics. 2009 Mar 25;10:125
pmid: 19320968
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Denekamp NY, Thorne MA, Clark MS, Kube M, Reinhardt R, Lubzens E.
Discovering genes associated with dormancy in the monogonont rotifer Brachionus plicatilis.
BMC Genomics. 2009 Mar 13;10:108
pmid: 19284654
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Blow N.
Transcriptomics: The digital generation.
Nature. 2009 Mar 12;458(7235):239-42
pmid: 19279641
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Zhao Q, Caballero OL, Levy S, Stevenson BJ, Iseli C, de Souza SJ, Galante PA, Busam D, Leversha MA, Chadalavada K, Rogers YH, Venter JC, Simpson AJ, Strausberg RL.
Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line.
Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1886-91
pmid: 19181860
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He M, Xia Y.
Construction and analysis of a normalized cDNA library from Metarhizium anisopliae var. acridum germinating and differentiating on Locusta migratoria wings.
FEMS Microbiol Lett. 2009 Feb;291(1):127-35
pmid: 19076228
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Pauchet Y, Freitak D, Heidel-Fischer HM, Heckel DG, Vogel H.
Immunity or digestion: glucanase activity in a glucan-binding protein family from Lepidoptera.
J Biol Chem. 2009 Jan 23;284(4):2214-24
pmid: 19033442
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Barker MS, Vogel H, Schranz ME.
Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales.
Gen Biol Evol. 2009;2009:391-9 http://gbe.oxfordjournals.org
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Clifton SW, Mitreva M.
Strategies for undertaking expressed sequence tag (EST) projects.
Methods Mol Biol. 2009;533:13-32
pmid: 19277564
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Fox S, Filichkin S, Mockler TC.
Applications of Ultra-high-Throughput Sequencing.
Methods Mol Biol. 2009;553:79-108
pmid: 19588102
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Ogundiwin EA, Marti C, Forment J, Pons C, Granell A, Gradziel TM, Peace CP, Crisosto CH.
Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit.
Plant Mol Biol. 2008 Nov;68(4-5):379-97
pmid: 18661259
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Anisimova VE, Shcheglov AS, Bogdanova EA, Rebrikov DV, Nekrasov AN, Barsova EV, Shagin DA, Lukyanov SA.
Is crab duplex-specific nuclease a member of the Serratia family of non-specific nucleases?
Gene. 2008 Jul 15;418(1-2):41-8
pmid: 18514436
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Fischer HM, Wheat CW, Heckel DG, Vogel H.
Evolutionary origins of a novel host plant detoxification gene in butterflies.
Mol Biol Evol. 2008 May;25(5):809-20
pmid: 18296701
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Vera JC, Wheat CW, Fescemyer HW, Frilander MJ, Crawford DL, Hanski I, Marden JH.
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.
Mol Ecol. 2008 Apr;17(7):1636-47
pmid: 18266620
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Salzburger W, Renn SC, Steinke D, Braasch I, Hofmann HA, Meyer A.
Annotation of expressed sequence tags for the East African cichlid fish Astatotilapia burtoni and evolutionary analyses of cichlid ORFs.
BMC Genomics. 2008 Feb 25;9:96
pmid: 18298844
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Zhao Y, Hoshiyama H, Shay JW, Wright WE.
Quantitative telomeric overhang determination using a double-strand specific nuclease.
Nucleic Acids Res. 2008 Feb;36(3):e14
pmid: 18073199
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Peng RH, Xiong AS, Xue Y, Li X, Liu JG, Cai B, Yao QH.
Kamchatka crab duplex-specific nuclease-mediated transcriptome subtraction method for identifying long cDNAs of differentially expressed genes.
Anal Biochem. 2008 Jan 15;372(2):148-55
pmid: 17905189
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Shcheglov A, Zhulidov P, Bogdanova E, Shagin D.
Normalization of cDNA Libraries.
In: Nucleic Acids Hybridization:
Modern Applications.
Buzdin, Anton; Lukyanov, Sergey (Eds.)
ISBN: 978-1-4020-6039-7. 2007;97-124 http://www.springerlink.com
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Moroz LL, Edwards JR, Puthanveettil SV, Kohn AB, Ha T, Heyland A, Knudsen B, Sahni A, Yu F, Liu L, Jezzini S, Lovell P, Iannucculli W, Chen M, Nguyen T, Sheng H, Shaw R, Kalachikov S, Panchin YV, Farmerie W, Russo JJ, Ju J, Kandel ER.
Neuronal transcriptome of aplysia: neuronal compartments and circuitry.
Cell. 2006 Dec 29;127(7):1453-67
pmid: 17190607
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Du C, Ge B, Liu Z, Fu K, Chan WC, McKeithan TW.
PCR-based generation of shRNA libraries from cDNAs.
BMC Biotechnol. 2006 Jun 21;6:28
pmid: 16790063
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Volik S, Raphael BJ, Huang G, Stratton MR, Bignel G, Murnane J, Brebner JH, Bajsarowicz K, Paris PL, Tao Q, Kowbel D, Lapuk A, Shagin DA, Shagina IA, Gray JW, Cheng JF, de Jong PJ, Pevzner P, Collins C.
Decoding the fine-scale structure of a breast cancer genome and transcriptome.
Genome Res. 2006 Mar;16(3):394-404
pmid: 16461635
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Deng W, Zhu X, Skogerbo G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, He H, Cui Y, Wang Y, Bu D, Chen R.
Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.
Genome Res. 2006 Jan;16(1):20-9
pmid: 16344563
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Altshuler IM, Zhulidov PA, Bogdanova EA, Mudrik NN, Shagin DA.
Application of the duplex-specific nuclease preference method to the analysis of point mutations in human genes.
Bioorg Khim. 2005 Nov-Dec;31(6):627-36 (in Russian)
pmid: 16363136
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Wang Z, Chua HK, Gusti AA, He F, Fenner B, Manopo I, Wang H, Kwang J.
RING-H2 protein WSSV249 from white spot syndrome virus sequesters a shrimp ubiquitin-conjugating enzyme, PvUbc, for viral pathogenesis.
J Virol. 2005 Jul;79(14):8764-72
pmid: 15994770
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Zhulidov PA, Bogdanova EA, Shcheglov AS, Shagina IA, Wagner LL, Khazpekov GL, Kozhemyako VV, Lukyanov SA, Shagin DA.
A method for the preparation of normalized cDNA libraries enriched with full-length sequences.
Bioorg Khim. 2005 Mar-Apr;31(2):186-94 (in Russian)
pmid: 15889793
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Diatchenko L, Slade GD, Nackley AG, Bhalang K, Sigurdsson A, Belfer I, Goldman D, Xu K, Shabalina SA, Shagin D, Max MB, Makarov SS, Maixner W.
Genetic basis for individual variations in pain perception and the development of a chronic pain condition.
Hum Mol Genet. 2005 Jan 1;14(1):135-43
pmid: 15537663
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Lu L, Kwang J.
Identification of a novel shrimp protein phosphatase and its association with latency-related ORF427 of white spot syndrome virus.
FEBS Lett. 2004 Nov 5;577(1-2):141-6
pmid: 15527775
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Zhulidov PA, Bogdanova EA, Shcheglov AS, Vagner LL, Khaspekov GL, Kozhemyako VB, Matz MV, Meleshkevitch E, Moroz LL, Lukyanov SA, Shagin DA.
Simple cDNA normalization using kamchatka crab duplex-specific nuclease.
Nucleic Acids Res. 2004 Feb 18;32(3):e37
pmid: 14973331
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Shagin DA, Rebrikov DV, Kozhemyako VB, Altshuler IM, Shcheglov AS, Zhulidov PA, Bogdanova EA, Staroverov DB, Rasskazov VA, Lukyanov S.
A novel method for SNP detection using a new duplex-specific nuclease from crab hepatopancreas.
Genome Res. 2002 Dec;12(12):1935-42
pmid: 12466298
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