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References citing Trimmer-Direct:
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Wall PK, Leebens-Mack J, Chanderbali AS, Barakat A, Wolcott E, Liang H, Landherr L, Tomsho LP, Hu Y, Carlson JE, Ma H, Schuster SC, Soltis DE, Soltis PS, Altman N, dePamphilis CW.
Comparison of next generation sequencing technologies for transcriptome characterization.
BMC Genomics. 2009 Aug 1;10:347
pmid: 19646272
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Nikapitiya C, De Zoysa M, Whang I, Kim CG, Lee YH, Kim SJ, Lee J.
Molecular cloning, characterization and expression analysis of peroxiredoxin 6 from disk abalone Haliotis discus discus and the antioxidant activity of its recombinant protein.
Fish Shellfish Immunol. 2009 Aug;27(2):239-49
pmid: 19460442
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Tang S, Okashah RA, Cordonnier-Pratt MM, Pratt LH, Ed Johnson V, Taylor CA, Arnold ML, Knapp SJ.
EST and EST-SSR marker resources for Iris.
BMC Plant Biol. 2009 Jun 10;9:72
pmid: 19515254
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Sharbel TF, Voigt ML, Corral JM, Thiel T, Varshney A, Kumlehn J, Vogel H, Rotter B.
Molecular signatures of apomictic and sexual ovules in the Boechera holboellii complex.
Plant J. 2009 Jun;58(5):870-82
pmid: 19220792
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Nikapitiya C, Oh C, Whang I, Kim CG, Lee YH, Kim SJ, Lee J.
Molecular characterization, gene expression analysis and biochemical properties of α-amylase from the disk abalone, Haliotis discus discus.
Comp Biochem Physiol B Biochem Mol Biol. 2009 Mar;152(3):271-81
pmid: 19135166
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Antony B, Fujii T, Moto K, Matsumoto S, Fukuzawa M, Nakano R, Tatsuki S, Ishikawa Y.
Pheromone-gland-specific fatty-acyl reductase in the adzuki bean borer, Ostrinia scapulalis (Lepidoptera: Crambidae).
Insect Biochem Mol Biol. 2009 Feb;39(2):90-5
pmid: 19041942
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Pauchet Y, Freitak D, Heidel-Fischer HM, Heckel DG, Vogel H.
Immunity or digestion: glucanase activity in a glucan-binding protein family from Lepidoptera.
J Biol Chem. 2009 Jan 23;284(4):2214-24
pmid: 19033442
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Barker MS, Vogel H, Schranz ME.
Paleopolyploidy in the Brassicales: Analyses of the Cleome Transcriptome Elucidate the History of Genome Duplications in Arabidopsis and Other Brassicales.
Gen Biol Evol. 2009;2009:391-9 http://gbe.oxfordjournals.org
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Baxter SW, McMillan O, Chamberlain N, Hoffrench R, Jiggens CD.
Prospects for Locating Adaptive Genes in Lepidopteran Genomes: A Case Study of Butterfly Color Patterns.
In: Molecular Biology and Genetics of the Lepidoptera. Marian R. Goldsmith, Frantisek Marec (eds).
ISBN: 978-1-4200-6014-0. 2009; http://books.google.com
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Clifton SW, Mitreva M.
Strategies for undertaking expressed sequence tag (EST) projects.
Methods Mol Biol. 2009;533:13-32
pmid: 19277564
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Fox S, Filichkin S, Mockler TC.
Applications of Ultra-high-Throughput Sequencing.
Methods Mol Biol. 2009;553:79-108
pmid: 19588102
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Nikapitiya C, De Zoysa M, Lee J.
Molecular characterization and gene expression analysis of a pattern recognition protein from disk abalone, Haliotis discus discus.
Fish Shellfish Immunol. 2008 Nov;25(5):638-47
pmid: 18782621
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Bushman BS, Larson SR, Mott IW, Cliften PF, Wang RR, Chatterton NJ, Hernandez AG, Ali S, Kim RW, Thimmapuram J, Gong G, Liu L, Mikel MA.
Development and annotation of perennial Triticeae ESTs and SSR markers.
Genome. 2008 Oct;51(10):779-88
pmid: 18923529
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Mahanama De Zoysaa, Wickramaarachchilage Anoja Pushpamalia, Chulhong Oha, Ilson Whangc, Se Jae Kimc and Jehee Lee.
Transcriptional up-regulation of disk abalone selenium dependent glutathione peroxidase by H2O2 oxidative stress and Vibrio alginolyticus bacterial infection.
Fish & Shellfish Immunology. 2008 Oct;25(4):446-57 http://www.sciencedirect.com
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Brautigam A, Shrestha RP, Whitten D, Wilkerson CG, Carr KM, Froehlich JE, Weber AP.
Low-coverage massively parallel pyrosequencing of cDNAs enables proteomics in non-model species: comparison of a species-specific database generated by pyrosequencing with databases from related species for proteome analysis of pea chloroplast envelopes.
J Biotechnol. 2008 Aug 31;136(1-2):44-53
pmid: 18394738
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Novaes E, Drost DR, Farmerie WG, Pappas GJ Jr, Grattapaglia D, Sederoff RR, Kirst M.
High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome.
BMC Genomics. 2008 Jun 30;9:312
pmid: 18590545
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Fischer HM, Wheat CW, Heckel DG, Vogel H.
Evolutionary origins of a novel host plant detoxification gene in butterflies.
Mol Biol Evol. 2008 May;25(5):809-20
pmid: 18296701
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Nikapitiya C, De Zoysa M, Kang HS, Oh C, Whang I, Lee J.
Molecular characterization and expression analysis of regucalcin in disk abalone (Haliotis discus discus): Intramuscular calcium administration stimulates the regucalcin mRNA expression.
Comp Biochem Physiol B Biochem Mol Biol. 2008 May;150(1):117-24
pmid: 18372203
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De Zoysa M, Pushpamali WA, Whang I, Kim SJ, Lee J.
Mitochondrial thioredoxin-2 from disk abalone (Haliotis discus discus): Molecular characterization, tissue expression and DNA protection activity of its recombinant protein.
Comp Biochem Physiol B Biochem Mol Biol. 2008 Apr;149(4):630-9
pmid: 18255328
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Ekanayake PM, De Zoysa M, Kang HS, Wan Q, Jee Y, Lee YH, Kim SJ, Lee J.
Cloning, characterization and tissue expression of disk abalone (Haliotis discus discus) catalase.
Fish Shellfish Immunol. 2008 Mar;24(3):267-78
pmid: 18187341
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Pushpamali WA, De Zoysa M, Kang HS, Oh CH, Whang I, Kim SJ, Lee J.
Comparative study of two thioredoxin peroxidases from disk abalone (Haliotis discus discus): Cloning, recombinant protein purification, characterization of antioxidant activities and expression analysis.
Fish Shellfish Immunol. 2008 Mar;24(3):294-307
pmid: 18226547
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Wang N, Whang I, Lee J.
A novel C-type lectin from abalone, Haliotis discus discus, agglutinates Vibrio alginolyticus.
Dev Comp Immunol. 2008;32(9):1034-40
pmid: 18372041
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Clark MS, Thorne MA, Purac J, Grubor-Lajsic G, Kube M, Reinhardt R, Worland MR.
Surviving extreme polar winters by desiccation: clues from Arctic springtail (Onychiurus arcticus) EST libraries.
BMC Genomics. 2007 Dec 21;8:475
pmid: 18154659
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Ramsey JS, Wilson AC, de Vos M, Sun Q, Tamborindeguy C, Winfield A, Malloch G, Smith DM, Fenton B, Gray SM, Jander G.
Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design.
BMC Genomics. 2007 Nov 16;8:423
pmid: 18021414
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Xie YF, Wang BC, Li B, Cai YF, Xie L, Xia YX, Chang PA, Jiang HZ.
Construction of cDNA library of cotton mutant (Xiangmian-18) library during gland forming stage.
Colloids Surf B Biointerfaces. 2007 Nov 15;60(2):258-263
pmid: 17689935
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De Zoysa M, Lee J.
Molecular cloning and expression analysis of interferon-gamma inducible lysosomal thiol reductase (GILT)-like cDNA from disk abalone (Haliotis discus discus).
J Invertebr Pathol. 2007 Nov;96(3):221-9
pmid: 17599346
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De Zoysa M, Kang HS, Song YB, Jee Y, Lee YD, Lee J.
First report of invertebrate Mx: cloning, characterization and expression analysis of Mx cDNA in disk abalone (Haliotis discus discus).
Fish Shellfish Immunol. 2007 Jul;23(1):86-96
pmid: 17097889
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Abernathy JW, Xu P, Li P, Xu DH, Kucuktas H, Klesius P, Arias C, Liu Z.
Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliis.
BMC Genomics. 2007 Jun 18;8:176
pmid: 17577414
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Quilang J, Wang S, Li P, Abernathy J, Peatman E, Wang Y, Wang L, Shi Y, Wallace R, Guo X, Liu Z.
Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers.
BMC Genomics. 2007 Jun 8;8:157
pmid: 17559679
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Danley PD, Mullen SP, Liu F, Nene V, Quackenbush J, Shaw KL.
A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution.
BMC Genomics. 2007 Apr 25;8:109
pmid: 17459168
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Shcheglov A, Zhulidov P, Bogdanova E, Shagin D.
Normalization of cDNA Libraries.
In: Nucleic Acids Hybridization:
Modern Applications.
Buzdin, Anton; Lukyanov, Sergey (Eds.)
ISBN: 978-1-4020-6039-7. 2007;97-124 http://www.springerlink.com
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Zhulidov PA, Bogdanova EA, Shcheglov AS, Shagina IA, Wagner LL, Khazpekov GL, Kozhemyako VV, Lukyanov SA, Shagin DA.
A method for the preparation of normalized cDNA libraries enriched with full-length sequences.
Bioorg Khim. 2005 Mar-Apr;31(2):186-94 (in Russian)
pmid: 15889793
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